4.0:Information of module
2hr continuous KCl and MSX control PeR cell
In comparison with whole seeds mature green help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001101 response to acid chemical BP 1.199e-04
GO:1901700 response to oxygen-containing compound BP 1.278e-04
GO:0015996 chlorophyll catabolic process BP 9.374e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 2.434e-26
GO:0043414 macromolecule methylation BP 3.003e-24
GO:0032259 methylation BP 5.889e-24
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr continuous KCl and MSX control PeR cell		 Log2 signal ratio
whole seeds mature green
1 263658_at AT1G04490 unknown 0.652 -0.919
2 251019_at AT5G02420 unknown 0.643 0.272
3 263575_at AT2G17070 unknown 0.618 -0.711
4 252218_at AT3G50150 unknown 0.608 -0.895
5 259027_at AT3G09280 unknown 0.583 -0.780
6 266032_x_at AT2G05890 unknown 0.544 -0.184
7 253827_at AT4G28085 unknown 0.540 -0.723
8 254205_at AT4G24170 [ATP binding microtubule motor family protein] 0.521 -0.960
9 253036_at AT4G38340 NLP3, NIN-like protein 3 0.514 -1.079
10 252858_at AT4G39770 TPPH, trehalose-6-phosphate phosphatase H 0.509 0.316
11 264534_at AT1G55700 [Cysteine/Histidine-rich C1 domain family protein] 0.502 -0.614
12 247704_at AT5G59510 DVL18, DEVIL 18, RTFL5, ROTUNDIFOLIA like 5 0.479 -0.681
13 250327_at AT5G12050 unknown 0.479 -1.064
14 257110_x_at AT3G30440 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1)] 0.472 -0.693
15 255197_x_at AT4G07450 unknown 0.450 0.002
16 263391_at AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C 0.446 -0.349
17 249893_at AT5G22555 unknown 0.443 -0.498
18 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] 0.442 -0.855
19 264866_at AT1G24140 [Matrixin family protein] 0.442 -0.889
20 265008_at AT1G61560 ATMLO6, MILDEW RESISTANCE LOCUS O 6, MLO6, MILDEW RESISTANCE LOCUS O 6 0.441 -0.830
21 250344_at AT5G11930 [Thioredoxin superfamily protein] 0.429 -0.977
22 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 0.425 -0.309
23 248411_at AT5G51580 unknown 0.423 -0.606
24 253737_at AT4G28703 [RmlC-like cupins superfamily protein] 0.396 -0.505
25 251238_at AT3G62430 [Protein with RNI-like/FBD-like domains] 0.386 -1.062
26 253179_at AT4G35200 unknown 0.369 -0.722
27 253133_at AT4G35800 NRPB1, RNA polymerase II large subunit, RNA_POL_II_LS, RNA POLYMERASE II LARGE SUBUNIT, RNA_POL_II_LSRNA_POL_II_LS, RPB1, RNA POLYMERASE II LARGE SUBUNIT 0.338 0.586
28 258307_x_at AT3G30560 [similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT1G35940.1)] 0.333 -0.856
29 253293_at AT4G33905 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.331 -0.165
30 263837_at AT2G04500 [Cysteine/Histidine-rich C1 domain family protein] 0.325 -1.232
31 261142_at AT1G19780 ATCNGC8, cyclic nucleotide gated channel 8, CNGC8, cyclic nucleotide gated channel 8 0.313 -0.304
32 263070_at AT2G17600 [Cysteine/Histidine-rich C1 domain family protein] 0.310 -0.731
33 260103_at AT1G35430 unknown 0.303 -0.559
34 259481_at AT1G18970 GLP4, germin-like protein 4 0.300 -0.739
35 250719_at AT5G06250 DPA4, DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4 0.297 -0.610
36 254193_at AT4G23870 unknown 0.296 -0.769
37 253814_at AT4G28290 unknown 0.294 -0.628
38 253318_at AT4G33970 [Leucine-rich repeat (LRR) family protein] 0.293 -0.605
39 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 0.291 -0.209
40 250958_at AT5G03260 LAC11, laccase 11 0.288 -0.749
41 247137_at AT5G66210 CPK28, calcium-dependent protein kinase 28 0.284 0.582
42 248358_at AT5G52400 CYP715A1, cytochrome P450, family 715, subfamily A, polypeptide 1 0.281 -0.872
43 259738_at AT1G64355 unknown 0.273 0.015
44 247751_at AT5G59050 unknown 0.273 0.830
45 257511_at AT1G43000 [PLATZ transcription factor family protein] 0.268 -0.740
46 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.268 -1.076
47 261834_at AT1G10640 [Pectin lyase-like superfamily protein] 0.266 0.048
48 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 -0.988 0.120
49 260475_at AT1G11080 scpl31, serine carboxypeptidase-like 31 -0.723 -0.714
50 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 -0.667 -0.761
51 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 -0.664 0.028
52 246215_at AT4G37180 [Homeodomain-like superfamily protein] -0.664 1.184
53 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 -0.592 1.800
54 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.562 0.703
55 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 -0.558 -0.373
56 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] -0.532 0.300
57 251956_at AT3G53460 CP29, chloroplast RNA-binding protein 29 -0.523 0.348
58 263483_at AT2G04030 AtHsp90.5, HEAT SHOCK PROTEIN 90.5, AtHsp90C, CR88, EMB1956, EMBRYO DEFECTIVE 1956, Hsp88.1, HEAT SHOCK PROTEIN 88.1, HSP90.5, HEAT SHOCK PROTEIN 90.5 -0.511 1.375
59 262876_at AT1G64750 ATDSS1(I), deletion of SUV3 suppressor 1(I), DSS1(I), deletion of SUV3 suppressor 1(I) -0.497 1.190
60 255586_at AT4G01560 MEE49, maternal effect embryo arrest 49 -0.490 1.231
61 265966_at AT2G37220 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.486 0.070
62 264188_at AT1G54690 G-H2AX, GAMMA H2AX, GAMMA-H2AX, gamma histone variant H2AX, H2AXB, HTA3, histone H2A 3 -0.463 0.001
63 256978_at AT3G21110 ATPURC, PUR7, purin 7, PURC, PURIN C -0.461 0.657
64 258155_at AT3G18130 RACK1C, receptor for activated C kinase 1C, RACK1C_AT, receptor for activated C kinase 1C -0.461 0.885
65 263882_at AT2G21790 ATRNR1, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, CLS8, CRINKLY LEAVES 8, DPD2, defective in pollen organelle DNA degradation 2, R1, RIBONUCLEOTIDE REDUCTASE 1, RNR1, ribonucleotide reductase 1 -0.460 -0.061
66 247912_at AT5G57480 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.449 -0.360
67 267102_at AT2G41500 EMB2776, LIS, LACHESIS -0.427 0.618
68 258794_at AT3G04710 TPR10, tetratricopeptide repeat 10 -0.420 0.479
69 251740_at AT3G56070 ROC2, rotamase cyclophilin 2 -0.417 1.102
70 254037_at AT4G25760 ATGDU2, glutamine dumper 2, GDU2, glutamine dumper 2 -0.413 -1.155
71 261911_at AT1G80750 [Ribosomal protein L30/L7 family protein] -0.397 -0.330
72 266980_at AT2G39390 [Ribosomal L29 family protein ] -0.394 1.042
73 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.393 0.186
74 246278_at AT4G37190 [LOCATED IN: cytosol, plasma membrane] -0.386 -0.912
75 245122_at AT2G47420 DIM1A, adenosine dimethyl transferase 1A -0.378 -0.381
76 262415_at AT1G49400 emb1129, embryo defective 1129 -0.376 0.824
77 263318_at AT2G24762 AtGDU4, glutamine dumper 4, GDU4, glutamine dumper 4 -0.368 -0.301
78 248254_at AT5G53320 [Leucine-rich repeat protein kinase family protein] -0.367 -0.677
79 261655_at AT1G01940 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] -0.366 0.996
80 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.365 -0.034
81 250222_at AT5G14050 [Transducin/WD40 repeat-like superfamily protein] -0.362 0.914
82 249466_at AT5G39740 OLI7, OLIGOCELLULA 7, RPL5B, ribosomal protein L5 B -0.362 0.149
83 253687_at AT4G29520 [LOCATED IN: endoplasmic reticulum, plasma membrane] -0.361 0.195
84 258166_at AT3G21540 [transducin family protein / WD-40 repeat family protein] -0.360 0.687
85 249938_at AT5G22330 ATTIP49A, RIN1, RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1 -0.360 0.146
86 259908_at AT1G60850 AAC42, ATRPAC42 -0.354 0.136
87 249901_at AT5G22650 ATHD2, ARABIDOPSIS HISTONE DEACETYLASE 2, ATHD2B, HD2, HISTONE DEACETYLASE 2, HD2B, histone deacetylase 2B, HDA4, HDT02, HDT2 -0.354 1.168
88 257018_at AT3G19630 [Radical SAM superfamily protein] -0.353 1.026
89 253754_at AT4G29020 [glycine-rich protein] -0.352 0.693
90 254684_at AT4G13850 ATGRP2, GLYCINE-RICH RNA-BINDING PROTEIN 2, GR-RBP2, glycine-rich RNA-binding protein 2, GRP2, glycine rich protein 2 -0.348 0.566
91 256173_at AT1G51730 [Ubiquitin-conjugating enzyme family protein] -0.344 1.019
92 247497_at AT5G61770 PPAN, PETER PAN-like protein -0.344 0.689
93 251638_at AT3G57490 [Ribosomal protein S5 family protein] -0.337 0.149