4.0:Information of module
2hr continuous KCl and MSX control PeR cell
In comparison with Starch sheath 2 days NAA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001101 response to acid chemical BP 1.199e-04
GO:1901700 response to oxygen-containing compound BP 1.278e-04
GO:0015996 chlorophyll catabolic process BP 9.374e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 2.434e-26
GO:0043414 macromolecule methylation BP 3.003e-24
GO:0032259 methylation BP 5.889e-24
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr continuous KCl and MSX control PeR cell		 Log2 signal ratio
Starch sheath 2 days NAA
1 263658_at AT1G04490 unknown 0.652 -0.084
2 251019_at AT5G02420 unknown 0.643 -0.178
3 263575_at AT2G17070 unknown 0.618 -0.266
4 252218_at AT3G50150 unknown 0.608 -0.104
5 259027_at AT3G09280 unknown 0.583 -0.196
6 266032_x_at AT2G05890 unknown 0.544 -0.057
7 253827_at AT4G28085 unknown 0.540 -0.340
8 254205_at AT4G24170 [ATP binding microtubule motor family protein] 0.521 -0.020
9 253036_at AT4G38340 NLP3, NIN-like protein 3 0.514 -0.246
10 252858_at AT4G39770 TPPH, trehalose-6-phosphate phosphatase H 0.509 -0.291
11 264534_at AT1G55700 [Cysteine/Histidine-rich C1 domain family protein] 0.502 -0.144
12 247704_at AT5G59510 DVL18, DEVIL 18, RTFL5, ROTUNDIFOLIA like 5 0.479 0.021
13 250327_at AT5G12050 unknown 0.479 -0.273
14 257110_x_at AT3G30440 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1)] 0.472 -0.061
15 255197_x_at AT4G07450 unknown 0.450 -0.300
16 263391_at AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C 0.446 0.167
17 249893_at AT5G22555 unknown 0.443 -0.092
18 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] 0.442 0.192
19 264866_at AT1G24140 [Matrixin family protein] 0.442 0.005
20 265008_at AT1G61560 ATMLO6, MILDEW RESISTANCE LOCUS O 6, MLO6, MILDEW RESISTANCE LOCUS O 6 0.441 -0.052
21 250344_at AT5G11930 [Thioredoxin superfamily protein] 0.429 0.107
22 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 0.425 -0.091
23 248411_at AT5G51580 unknown 0.423 -0.045
24 253737_at AT4G28703 [RmlC-like cupins superfamily protein] 0.396 -0.109
25 251238_at AT3G62430 [Protein with RNI-like/FBD-like domains] 0.386 -0.227
26 253179_at AT4G35200 unknown 0.369 -0.013
27 253133_at AT4G35800 NRPB1, RNA polymerase II large subunit, RNA_POL_II_LS, RNA POLYMERASE II LARGE SUBUNIT, RNA_POL_II_LSRNA_POL_II_LS, RPB1, RNA POLYMERASE II LARGE SUBUNIT 0.338 -0.174
28 258307_x_at AT3G30560 [similar to AT hook motif-containing protein-related [Arabidopsis thaliana] (TAIR:AT1G35940.1)] 0.333 0.053
29 253293_at AT4G33905 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.331 0.061
30 263837_at AT2G04500 [Cysteine/Histidine-rich C1 domain family protein] 0.325 -0.333
31 261142_at AT1G19780 ATCNGC8, cyclic nucleotide gated channel 8, CNGC8, cyclic nucleotide gated channel 8 0.313 -0.248
32 263070_at AT2G17600 [Cysteine/Histidine-rich C1 domain family protein] 0.310 -0.199
33 260103_at AT1G35430 unknown 0.303 -0.077
34 259481_at AT1G18970 GLP4, germin-like protein 4 0.300 -0.101
35 250719_at AT5G06250 DPA4, DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4 0.297 -0.147
36 254193_at AT4G23870 unknown 0.296 0.261
37 253814_at AT4G28290 unknown 0.294 0.032
38 253318_at AT4G33970 [Leucine-rich repeat (LRR) family protein] 0.293 -0.191
39 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 0.291 0.111
40 250958_at AT5G03260 LAC11, laccase 11 0.288 -0.184
41 247137_at AT5G66210 CPK28, calcium-dependent protein kinase 28 0.284 0.448
42 248358_at AT5G52400 CYP715A1, cytochrome P450, family 715, subfamily A, polypeptide 1 0.281 0.015
43 259738_at AT1G64355 unknown 0.273 0.154
44 247751_at AT5G59050 unknown 0.273 0.036
45 257511_at AT1G43000 [PLATZ transcription factor family protein] 0.268 -0.165
46 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.268 0.099
47 261834_at AT1G10640 [Pectin lyase-like superfamily protein] 0.266 -0.369
48 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 -0.988 -0.227
49 260475_at AT1G11080 scpl31, serine carboxypeptidase-like 31 -0.723 -0.363
50 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 -0.667 -0.035
51 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 -0.664 -0.048
52 246215_at AT4G37180 [Homeodomain-like superfamily protein] -0.664 0.269
53 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 -0.592 0.097
54 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.562 0.516
55 253949_at AT4G26780 AR192, MGE2, mitochondrial GrpE 2 -0.558 0.649
56 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] -0.532 0.512
57 251956_at AT3G53460 CP29, chloroplast RNA-binding protein 29 -0.523 0.157
58 263483_at AT2G04030 AtHsp90.5, HEAT SHOCK PROTEIN 90.5, AtHsp90C, CR88, EMB1956, EMBRYO DEFECTIVE 1956, Hsp88.1, HEAT SHOCK PROTEIN 88.1, HSP90.5, HEAT SHOCK PROTEIN 90.5 -0.511 0.644
59 262876_at AT1G64750 ATDSS1(I), deletion of SUV3 suppressor 1(I), DSS1(I), deletion of SUV3 suppressor 1(I) -0.497 0.576
60 255586_at AT4G01560 MEE49, maternal effect embryo arrest 49 -0.490 0.388
61 265966_at AT2G37220 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.486 0.445
62 264188_at AT1G54690 G-H2AX, GAMMA H2AX, GAMMA-H2AX, gamma histone variant H2AX, H2AXB, HTA3, histone H2A 3 -0.463 0.628
63 256978_at AT3G21110 ATPURC, PUR7, purin 7, PURC, PURIN C -0.461 0.233
64 258155_at AT3G18130 RACK1C, receptor for activated C kinase 1C, RACK1C_AT, receptor for activated C kinase 1C -0.461 0.545
65 263882_at AT2G21790 ATRNR1, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, CLS8, CRINKLY LEAVES 8, DPD2, defective in pollen organelle DNA degradation 2, R1, RIBONUCLEOTIDE REDUCTASE 1, RNR1, ribonucleotide reductase 1 -0.460 0.573
66 247912_at AT5G57480 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.449 -0.142
67 267102_at AT2G41500 EMB2776, LIS, LACHESIS -0.427 0.016
68 258794_at AT3G04710 TPR10, tetratricopeptide repeat 10 -0.420 0.407
69 251740_at AT3G56070 ROC2, rotamase cyclophilin 2 -0.417 0.470
70 254037_at AT4G25760 ATGDU2, glutamine dumper 2, GDU2, glutamine dumper 2 -0.413 -0.048
71 261911_at AT1G80750 [Ribosomal protein L30/L7 family protein] -0.397 0.665
72 266980_at AT2G39390 [Ribosomal L29 family protein ] -0.394 0.482
73 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.393 0.089
74 246278_at AT4G37190 [LOCATED IN: cytosol, plasma membrane] -0.386 0.106
75 245122_at AT2G47420 DIM1A, adenosine dimethyl transferase 1A -0.378 0.261
76 262415_at AT1G49400 emb1129, embryo defective 1129 -0.376 0.455
77 263318_at AT2G24762 AtGDU4, glutamine dumper 4, GDU4, glutamine dumper 4 -0.368 -0.111
78 248254_at AT5G53320 [Leucine-rich repeat protein kinase family protein] -0.367 0.215
79 261655_at AT1G01940 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] -0.366 0.395
80 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.365 0.043
81 250222_at AT5G14050 [Transducin/WD40 repeat-like superfamily protein] -0.362 0.314
82 249466_at AT5G39740 OLI7, OLIGOCELLULA 7, RPL5B, ribosomal protein L5 B -0.362 0.611
83 253687_at AT4G29520 [LOCATED IN: endoplasmic reticulum, plasma membrane] -0.361 0.157
84 258166_at AT3G21540 [transducin family protein / WD-40 repeat family protein] -0.360 0.104
85 249938_at AT5G22330 ATTIP49A, RIN1, RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1 -0.360 0.308
86 259908_at AT1G60850 AAC42, ATRPAC42 -0.354 0.157
87 249901_at AT5G22650 ATHD2, ARABIDOPSIS HISTONE DEACETYLASE 2, ATHD2B, HD2, HISTONE DEACETYLASE 2, HD2B, histone deacetylase 2B, HDA4, HDT02, HDT2 -0.354 0.540
88 257018_at AT3G19630 [Radical SAM superfamily protein] -0.353 0.146
89 253754_at AT4G29020 [glycine-rich protein] -0.352 -0.217
90 254684_at AT4G13850 ATGRP2, GLYCINE-RICH RNA-BINDING PROTEIN 2, GR-RBP2, glycine-rich RNA-binding protein 2, GRP2, glycine rich protein 2 -0.348 0.326
91 256173_at AT1G51730 [Ubiquitin-conjugating enzyme family protein] -0.344 0.260
92 247497_at AT5G61770 PPAN, PETER PAN-like protein -0.344 0.077
93 251638_at AT3G57490 [Ribosomal protein S5 family protein] -0.337 0.396