4.0:Information of module
2hr transitory KNO3 ECR cell
In comparison with aerial organ callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010167 response to nitrate BP 4.428e-07
GO:0010038 response to metal ion BP 1.407e-06
GO:0015706 nitrate transport BP 8.124e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 5.650e-23
GO:0019684 photosynthesis, light reaction BP 7.302e-20
GO:0006364 rRNA processing BP 2.205e-18
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr transitory KNO3 ECR cell		 Log2 signal ratio
aerial organ callus inducing medium 96 h
1 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.937 -0.192
2 245258_at AT4G15340 04C11, ATPEN1, pentacyclic triterpene synthase 1, PEN1, pentacyclic triterpene synthase 1 0.680 0.026
3 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.668 0.661
4 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.661 -0.045
5 266700_at AT2G19740 [Ribosomal protein L31e family protein] 0.610 0.116
6 246142_at AT5G19970 unknown 0.542 -0.725
7 261791_at AT1G16170 unknown 0.539 -0.141
8 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 0.525 0.232
9 249325_at AT5G40850 UPM1, urophorphyrin methylase 1 0.512 -0.154
10 265766_at AT2G48080 [oxidoreductase, 2OG-Fe(II) oxygenase family protein] 0.506 -0.062
11 261410_at AT1G07610 MT1C, metallothionein 1C 0.501 0.268
12 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.488 -0.107
13 249266_at AT5G41670 [6-phosphogluconate dehydrogenase family protein] 0.446 0.133
14 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.445 -0.237
15 247218_at AT5G65010 ASN2, asparagine synthetase 2 0.409 -0.336
16 247443_at AT5G62720 [Integral membrane HPP family protein] 0.407 -0.002
17 262180_at AT1G78050 PGM, phosphoglycerate/bisphosphoglycerate mutase 0.402 0.259
18 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.397 -0.325
19 261806_at AT1G30510 ATRFNR2, root FNR 2, RFNR2, root FNR 2 0.384 0.181
20 260284_at AT1G80380 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.368 -0.265
21 264760_at AT1G61290 ATSYP124, SYP124, syntaxin of plants 124 0.352 -0.027
22 265475_at AT2G15620 ATHNIR, ARABIDOPSIS THALIANA NITRITE REDUCTASE, NIR, NITRITE REDUCTASE, NIR1, nitrite reductase 1 0.347 -0.074
23 259015_at AT3G07350 unknown 0.342 -0.071
24 251396_at AT3G60750 AtTKL1, TKL1, transketolase 1 0.342 -0.235
25 247775_at AT5G58690 ATPLC5, PLC5, phosphatidylinositol-speciwc phospholipase C5 0.339 -0.077
26 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.335 -0.101
27 252463_at AT3G47070 [LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope] -0.782 -0.592
28 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 -0.638 -1.015
29 264636_at AT1G65490 unknown -0.631 -0.546
30 263761_at AT2G21330 AtFBA1, FBA1, fructose-bisphosphate aldolase 1 -0.630 -0.819
31 249037_at AT5G44130 FLA13, FASCICLIN-like arabinogalactan protein 13 precursor -0.592 -0.278
32 264837_at AT1G03600 PSB27 -0.557 -0.420
33 261769_at AT1G76100 PETE1, plastocyanin 1 -0.556 -0.593
34 247073_at AT5G66570 MSP-1, MANGANESE-STABILIZING PROTEIN 1, OE33, OXYGEN EVOLVING COMPLEX 33 KILODALTON PROTEIN, OEE1, 33 KDA OXYGEN EVOLVING POLYPEPTIDE 1, OEE33, OXYGEN EVOLVING ENHANCER PROTEIN 33, PSBO-1, PS II OXYGEN-EVOLVING COMPLEX 1, PSBO1, PS II oxygen-evolving complex 1 -0.461 -0.332
35 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.451 0.166
36 263350_at AT2G13360 AGT, alanine:glyoxylate aminotransferase, AGT1, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, SGAT, L-serine:glyoxylate aminotransferase -0.446 -0.309
37 265287_at AT2G20260 PSAE-2, photosystem I subunit E-2 -0.445 -0.332
38 258993_at AT3G08940 LHCB4.2, light harvesting complex photosystem II -0.441 -0.354
39 253040_at AT4G37800 XTH7, xyloglucan endotransglucosylase/hydrolase 7 -0.414 -0.124
40 251762_at AT3G55800 SBPASE, sedoheptulose-bisphosphatase -0.409 -0.629
41 257168_at AT3G24430 HCF101, HIGH-CHLOROPHYLL-FLUORESCENCE 101 -0.403 -0.640
42 247214_at AT5G64850 unknown -0.390 -0.779
43 258223_at AT3G15840 PIFI, post-illumination chlorophyll fluorescence increase -0.387 -0.316
44 254998_at AT4G09760 [Protein kinase superfamily protein] -0.380 0.024
45 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.378 0.537
46 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 -0.366 -0.859
47 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.363 -0.207
48 248961_at AT5G45650 [subtilase family protein] -0.351 -0.366
49 265182_at AT1G23740 AOR, alkenal/one oxidoreductase -0.336 -0.539
50 250054_at AT5G17860 CAX7, calcium exchanger 7 -0.306 0.263
51 255088_at AT4G09350 CRRJ, CHLORORESPIRATORY REDUCTION J, DJC75, DNA J protein C75, NdhT, NADH dehydrogenase-like complex T -0.296 -0.946