4.0:Information of module
root protoplasts 40 mM NaCl
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 3.919e-25
GO:0010243 response to organonitrogen compound BP 4.738e-25
GO:1901700 response to oxygen-containing compound BP 1.043e-21
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 5.100e-13
GO:0032259 methylation BP 2.467e-11
GO:0043414 macromolecule methylation BP 2.713e-11
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root protoplasts 40 mM NaCl		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 253259_at AT4G34410 RRTF1, redox responsive transcription factor 1 1.405 -0.869
2 266821_at AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 1.217 0.120
3 264718_at AT1G70130 LecRK-V.2, L-type lectin receptor kinase V.2 1.210 0.007
4 258606_at AT3G02840 [ARM repeat superfamily protein] 1.186 -0.781
5 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A 1.175 -0.122
6 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein 1.169 0.227
7 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 1.164 -0.681
8 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 1.127 0.178
9 245033_at AT2G26380 [Leucine-rich repeat (LRR) family protein] 1.122 -0.020
10 256991_at AT3G28600 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 1.112 -0.393
11 248090_at AT5G55090 MAPKKK15, mitogen-activated protein kinase kinase kinase 15 1.111 -0.877
12 255937_at AT1G12610 DDF1, DWARF AND DELAYED FLOWERING 1 1.072 -0.519
13 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 1.066 -1.219
14 251950_at AT3G53600 [C2H2-type zinc finger family protein] 1.062 -1.255
15 261037_at AT1G17420 ATLOX3, Arabidopsis thaliana lipoxygenase 3, LOX3, lipoxygenase 3 1.035 -0.597
16 247789_at AT5G58680 [ARM repeat superfamily protein] 1.007 0.322
17 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.998 -0.987
18 256009_at AT1G19210 [Integrase-type DNA-binding superfamily protein] 0.989 -0.904
19 260978_at AT1G53540 [HSP20-like chaperones superfamily protein] 0.986 -0.881
20 252739_at AT3G43250 unknown 0.969 -1.691
21 248611_at AT5G49520 ATWRKY48, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY48, WRKY DNA-binding protein 48 0.967 -0.126
22 261838_at AT1G16030 Hsp70b, heat shock protein 70B 0.964 -0.622
23 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 0.963 0.300
24 255568_at AT4G01250 AtWRKY22, WRKY22 0.957 0.135
25 266590_at AT2G46240 ATBAG6, ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BAG6, BCL-2-associated athanogene 6 0.957 -0.882
26 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 0.955 0.082
27 247208_at AT5G64870 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 0.954 -0.275
28 260333_at AT1G70500 [Pectin lyase-like superfamily protein] 0.940 -1.043
29 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.937 -0.801
30 247071_at AT5G66640 DAR3, DA1-related protein 3 0.933 -0.643
31 247913_at AT5G57510 unknown 0.916 -0.953
32 267026_at AT2G38340 DREB19, dehydration response element-binding protein 19 0.915 -0.082
33 262148_at AT1G52560 [HSP20-like chaperones superfamily protein] 0.896 -1.568
34 253832_at AT4G27654 unknown 0.888 -1.506
35 265723_at AT2G32140 [transmembrane receptors] 0.883 -0.512
36 259879_at AT1G76650 CML38, calmodulin-like 38 0.874 0.043
37 251746_at AT3G56060 [Glucose-methanol-choline (GMC) oxidoreductase family protein] 0.854 -0.010
38 251992_at AT3G53350 MIDD1, Microtubule Depletion Domain 1, RIP3, ROP interactive partner 3, RIP4, ROP interactive partner 4 0.852 0.000
39 256044_at AT1G07160 [Protein phosphatase 2C family protein] 0.848 0.360
40 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 0.841 0.416
41 265618_at AT2G25460 unknown 0.834 -0.428
42 258865_at AT3G03200 anac045, NAC domain containing protein 45, NAC045, NAC domain containing protein 45 0.831 -1.085
43 247492_at AT5G61890 [Integrase-type DNA-binding superfamily protein] 0.824 -0.624
44 256535_at AT1G33280 ANAC015, NAC domain containing protein 15, BRN1, BEARSKIN 1, NAC015, NAC domain containing protein 15 0.809 -1.011
45 259325_at AT3G05320 [O-fucosyltransferase family protein] 0.798 0.121
46 244935_at ATCG01090 NDHI 0.783 0.401
47 260845_at AT1G17310 [MADS-box transcription factor family protein] 0.782 -0.794
48 265732_at AT2G01300 unknown 0.764 -0.594
49 252571_at AT3G45280 ATSYP72, SYP72, syntaxin of plants 72 0.763 -0.203
50 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A 0.754 -0.668
51 247590_at AT5G60720 unknown 0.753 0.292
52 245252_at AT4G17500 ATERF-1, ethylene responsive element binding factor 1, ERF-1, ethylene responsive element binding factor 1 0.749 0.323
53 260173_at AT1G71930 ANAC030, Arabidopsis NAC domain containing protein 30, VND7, vascular related NAC-domain protein 7 0.742 0.064
54 259657_at AT1G55180 PLDALPHA4, PLDEPSILON, phospholipase D alpha 4 0.729 -0.632
55 265620_at AT2G27310 [F-box family protein] 0.724 -0.170
56 248821_at AT5G47070 [Protein kinase superfamily protein] 0.718 -0.055
57 257646_at AT3G25740 MAP1B, methionine aminopeptidase 1C, MAP1C, METHIONINE AMINOPEPTIDASE 1C 0.714 -0.839
58 265452_at AT2G46510 AIB, ABA-inducible BHLH-type transcription factor, ATAIB, ABA-inducible BHLH-type transcription factor, JAM1, JA-associated MYC2-like 1 0.711 0.254
59 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 0.706 -0.412
60 248855_at AT5G46590 anac096, NAC domain containing protein 96, NAC096, NAC domain containing protein 96 0.696 0.014
61 244936_at ATCG01100 NDHA 0.691 0.379
62 262671_at AT1G76040 CPK29, calcium-dependent protein kinase 29 0.677 -1.299
63 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 0.673 0.416
64 245528_at AT4G15530 PPDK, pyruvate orthophosphate dikinase 0.660 1.310
65 257644_at AT3G25780 AOC3, allene oxide cyclase 3 0.658 -0.002
66 249522_at AT5G38700 unknown 0.639 0.000
67 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 0.639 0.649
68 264346_at AT1G12010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.628 -0.479
69 264238_at AT1G54740 unknown -1.001 -0.836
70 249061_at AT5G44550 [Uncharacterised protein family (UPF0497)] -0.979 -0.681
71 266276_at AT2G29330 TRI, tropinone reductase -0.955 0.069
72 263998_at AT2G22510 [hydroxyproline-rich glycoprotein family protein] -0.925 -0.027
73 251531_at AT3G58550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.790 -0.329
74 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.786 0.747
75 262349_at AT2G48130 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.769 0.459
76 263005_at AT1G54540 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.740 -0.942
77 266900_at AT2G34610 unknown -0.739 -0.034
78 258905_at AT3G06390 [Uncharacterised protein family (UPF0497)] -0.733 -0.591
79 250200_at AT5G14130 [Peroxidase superfamily protein] -0.725 -0.069
80 249289_at AT5G41040 ASFT, aliphatic suberin feruloyl-transferase, HHT, hydroxycinnamoyl- CoA:ω-hydroxyacid O-hydroxycinnamoyltransferase, RWP1, REDUCED LEVELS OF WALL-BOUND PHENOLICS 1 -0.710 -1.011
81 245612_at AT4G14440 ATECI3, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, ECI3, DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, HCD1, 3-hydroxyacyl-CoA dehydratase 1 -0.638 1.316
82 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 -0.623 -0.147
83 266968_at AT2G39360 [Protein kinase superfamily protein] -0.614 -0.828
84 251652_at AT3G57380 [Glycosyltransferase family 61 protein] -0.581 -0.122
85 253699_at AT4G29800 PLA IVD, PLP8, PATATIN-like protein 8 -0.570 -0.901
86 246067_at AT5G19410 ABCG23, ATP-binding cassette G23 -0.541 -1.104
87 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] -0.522 -0.313
88 247672_at AT5G60220 TET4, tetraspanin4 -0.519 -0.661
89 255175_at AT4G07960 ATCSLC12, Cellulose-synthase-like C12, CSLC12, CELLULOSE-SYNTHASE LIKE C12, CSLC12, Cellulose-synthase-like C12 -0.518 -0.442
90 263616_at AT2G04680 [Cysteine/Histidine-rich C1 domain family protein] -0.508 -0.973
91 263595_at AT2G01890 ATPAP8, PURPLE ACID PHOSPHATASE 8, PAP8, purple acid phosphatase 8 -0.503 0.637
92 260693_at AT1G32450 AtNPF7.3, NPF7.3, NRT1/ PTR family 7.3, NRT1.5, nitrate transporter 1.5 -0.485 -0.969
93 250204_at AT5G13990 ATEXO70C2, exocyst subunit exo70 family protein C2, EXO70C2, exocyst subunit exo70 family protein C2 -0.484 -0.093
94 260926_at AT1G21360 GLTP2, glycolipid transfer protein 2 -0.476 -0.980
95 266265_at AT2G29340 [NAD-dependent epimerase/dehydratase family protein] -0.453 0.384
96 261931_at AT1G22430 [GroES-like zinc-binding dehydrogenase family protein] -0.452 0.403
97 260366_at AT1G70460 AtPERK13, proline-rich extensin-like receptor kinase 13, PERK13, proline-rich extensin-like receptor kinase 13, RHS10, root hair specific 10 -0.430 0.053
98 262339_at AT1G64000 ATWRKY56, WRKY56, WRKY DNA-binding protein 56 -0.429 -0.920
99 261377_at AT1G18850 unknown -0.421 0.647
100 254187_at AT4G23890 CRR31, CHLORORESPIRATORY REDUCTION 31, NdhS, NADH dehydrogenase-like complex S -0.412 0.707
101 253909_at AT4G27270 [Quinone reductase family protein] -0.405 0.086
102 266670_at AT2G29740 UGT71C2, UDP-glucosyl transferase 71C2 -0.402 0.226
103 248205_at AT5G54300 unknown -0.388 0.820
104 249475_at AT5G38890 [Nucleic acid-binding, OB-fold-like protein] -0.385 0.726
105 267472_at AT2G02850 ARPN, plantacyanin -0.379 1.294
106 250868_at AT5G03860 MLS, malate synthase -0.375 1.657
107 247570_at AT5G61250 AtGUS1, glucuronidase 1, GUS1, glucuronidase 1 -0.365 0.105
108 248151_at AT5G54270 LHCB3, light-harvesting chlorophyll B-binding protein 3, LHCB3*1 -0.363 1.365
109 251964_at AT3G53370 [S1FA-like DNA-binding protein] -0.359 0.353
110 264708_at AT1G09740 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.353 -0.370
111 249085_at AT5G44170 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.344 -0.150
112 256542_at AT1G42550 PMI1, PLASTID MOVEMENT IMPAIRED1 -0.342 0.734
113 263224_at AT1G30580 [GTP binding] -0.337 0.698
114 259193_at AT3G01480 ATCYP38, ARABIDOPSIS CYCLOPHILIN 38, CYP38, cyclophilin 38 -0.334 0.363
115 263679_at AT1G59990 EMB3108, EMBRYO DEFECTIVE 3108, HS3, HEAVY SEED 3, RH22, RNA helicase 22 -0.333 0.365
116 245937_at AT5G19750 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] -0.333 0.236
117 255558_at AT4G01900 GLB1, GLNB1 homolog, PII -0.327 0.418
118 254089_at AT4G24800 ECIP1, EIN2 C-terminus Interacting Protein 1 -0.327 0.447
119 260611_at AT2G43670 [Carbohydrate-binding X8 domain superfamily protein] -0.324 -1.066
120 245300_at AT4G16350 CBL6, calcineurin B-like protein 6, SCABP2, SOS3-LIKE CALCIUM BINDING PROTEIN 2 -0.323 -0.898
121 262418_at AT1G50320 ATHX, thioredoxin X, ATX, THIOREDOXIN X, THX, thioredoxin X -0.318 1.082
122 266903_at AT2G34570 MEE21, maternal effect embryo arrest 21 -0.311 0.541
123 265931_at AT2G18520 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.309 0.287
124 253734_at AT4G29180 RHS16, root hair specific 16 -0.309 -0.400
125 261417_at AT1G07700 [Thioredoxin superfamily protein] -0.306 0.686
126 254787_at AT4G12690 unknown -0.305 0.159
127 256358_at AT1G66470 AtRHD6, RHD6, ROOT HAIR DEFECTIVE6 -0.305 0.588
128 253305_at AT4G33666 unknown -0.298 -0.664
129 247831_at AT5G58540 [Protein kinase superfamily protein] -0.294 -1.043
130 264206_at AT1G22730 [MA3 domain-containing protein] -0.290 0.609
131 260394_at AT1G74080 ATMYB122, MYB DOMAIN PROTEIN 122, MYB122, myb domain protein 122 -0.290 -0.344
132 251727_at AT3G56290 unknown -0.285 0.304
133 252900_at AT4G39540 ATSK2, SK2, shikimate kinase 2 -0.283 1.054
134 247356_at AT5G63800 BGAL6, beta-galactosidase 6, MUM2, MUCILAGE-MODIFIED 2 -0.272 0.135
135 258657_at AT3G09890 [Ankyrin repeat family protein] -0.271 1.428