4.0:Information of module
root protoplasts 40 mM NaCl
In comparison with Col 8h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 3.919e-25
GO:0010243 response to organonitrogen compound BP 4.738e-25
GO:1901700 response to oxygen-containing compound BP 1.043e-21
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 5.100e-13
GO:0032259 methylation BP 2.467e-11
GO:0043414 macromolecule methylation BP 2.713e-11
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root protoplasts 40 mM NaCl		 Log2 signal ratio
Col 8h
1 253259_at AT4G34410 RRTF1, redox responsive transcription factor 1 1.405 0.933
2 266821_at AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 1.217 0.152
3 264718_at AT1G70130 LecRK-V.2, L-type lectin receptor kinase V.2 1.210 0.252
4 258606_at AT3G02840 [ARM repeat superfamily protein] 1.186 0.320
5 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A 1.175 0.025
6 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein 1.169 0.080
7 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 1.164 0.072
8 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 1.127 0.265
9 245033_at AT2G26380 [Leucine-rich repeat (LRR) family protein] 1.122 0.085
10 256991_at AT3G28600 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 1.112 -0.000
11 248090_at AT5G55090 MAPKKK15, mitogen-activated protein kinase kinase kinase 15 1.111 0.108
12 255937_at AT1G12610 DDF1, DWARF AND DELAYED FLOWERING 1 1.072 1.126
13 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 1.066 0.537
14 251950_at AT3G53600 [C2H2-type zinc finger family protein] 1.062 0.609
15 261037_at AT1G17420 ATLOX3, Arabidopsis thaliana lipoxygenase 3, LOX3, lipoxygenase 3 1.035 0.604
16 247789_at AT5G58680 [ARM repeat superfamily protein] 1.007 0.445
17 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.998 0.020
18 256009_at AT1G19210 [Integrase-type DNA-binding superfamily protein] 0.989 0.425
19 260978_at AT1G53540 [HSP20-like chaperones superfamily protein] 0.986 0.036
20 252739_at AT3G43250 unknown 0.969 0.402
21 248611_at AT5G49520 ATWRKY48, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY48, WRKY DNA-binding protein 48 0.967 0.398
22 261838_at AT1G16030 Hsp70b, heat shock protein 70B 0.964 -0.044
23 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 0.963 0.412
24 255568_at AT4G01250 AtWRKY22, WRKY22 0.957 0.534
25 266590_at AT2G46240 ATBAG6, ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BAG6, BCL-2-associated athanogene 6 0.957 -0.034
26 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 0.955 0.116
27 247208_at AT5G64870 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 0.954 0.131
28 260333_at AT1G70500 [Pectin lyase-like superfamily protein] 0.940 -0.042
29 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.937 0.303
30 247071_at AT5G66640 DAR3, DA1-related protein 3 0.933 0.006
31 247913_at AT5G57510 unknown 0.916 0.170
32 267026_at AT2G38340 DREB19, dehydration response element-binding protein 19 0.915 0.264
33 262148_at AT1G52560 [HSP20-like chaperones superfamily protein] 0.896 -0.066
34 253832_at AT4G27654 unknown 0.888 0.518
35 265723_at AT2G32140 [transmembrane receptors] 0.883 -0.138
36 259879_at AT1G76650 CML38, calmodulin-like 38 0.874 0.322
37 251746_at AT3G56060 [Glucose-methanol-choline (GMC) oxidoreductase family protein] 0.854 0.060
38 251992_at AT3G53350 MIDD1, Microtubule Depletion Domain 1, RIP3, ROP interactive partner 3, RIP4, ROP interactive partner 4 0.852 -0.017
39 256044_at AT1G07160 [Protein phosphatase 2C family protein] 0.848 0.062
40 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 0.841 0.663
41 265618_at AT2G25460 unknown 0.834 0.261
42 258865_at AT3G03200 anac045, NAC domain containing protein 45, NAC045, NAC domain containing protein 45 0.831 0.030
43 247492_at AT5G61890 [Integrase-type DNA-binding superfamily protein] 0.824 -0.019
44 256535_at AT1G33280 ANAC015, NAC domain containing protein 15, BRN1, BEARSKIN 1, NAC015, NAC domain containing protein 15 0.809 0.071
45 259325_at AT3G05320 [O-fucosyltransferase family protein] 0.798 0.264
46 244935_at ATCG01090 NDHI 0.783 -0.000
47 260845_at AT1G17310 [MADS-box transcription factor family protein] 0.782 0.029
48 265732_at AT2G01300 unknown 0.764 0.339
49 252571_at AT3G45280 ATSYP72, SYP72, syntaxin of plants 72 0.763 0.012
50 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A 0.754 0.491
51 247590_at AT5G60720 unknown 0.753 0.038
52 245252_at AT4G17500 ATERF-1, ethylene responsive element binding factor 1, ERF-1, ethylene responsive element binding factor 1 0.749 0.204
53 260173_at AT1G71930 ANAC030, Arabidopsis NAC domain containing protein 30, VND7, vascular related NAC-domain protein 7 0.742 0.011
54 259657_at AT1G55180 PLDALPHA4, PLDEPSILON, phospholipase D alpha 4 0.729 0.124
55 265620_at AT2G27310 [F-box family protein] 0.724 0.143
56 248821_at AT5G47070 [Protein kinase superfamily protein] 0.718 -0.008
57 257646_at AT3G25740 MAP1B, methionine aminopeptidase 1C, MAP1C, METHIONINE AMINOPEPTIDASE 1C 0.714 -0.006
58 265452_at AT2G46510 AIB, ABA-inducible BHLH-type transcription factor, ATAIB, ABA-inducible BHLH-type transcription factor, JAM1, JA-associated MYC2-like 1 0.711 0.080
59 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 0.706 0.137
60 248855_at AT5G46590 anac096, NAC domain containing protein 96, NAC096, NAC domain containing protein 96 0.696 0.094
61 244936_at ATCG01100 NDHA 0.691 -0.002
62 262671_at AT1G76040 CPK29, calcium-dependent protein kinase 29 0.677 -0.024
63 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 0.673 0.174
64 245528_at AT4G15530 PPDK, pyruvate orthophosphate dikinase 0.660 0.006
65 257644_at AT3G25780 AOC3, allene oxide cyclase 3 0.658 0.327
66 249522_at AT5G38700 unknown 0.639 0.623
67 249583_at AT5G37770 CML24, CALMODULIN-LIKE 24, TCH2, TOUCH 2 0.639 0.112
68 264346_at AT1G12010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.628 -0.038
69 264238_at AT1G54740 unknown -1.001 -0.100
70 249061_at AT5G44550 [Uncharacterised protein family (UPF0497)] -0.979 -0.008
71 266276_at AT2G29330 TRI, tropinone reductase -0.955 0.031
72 263998_at AT2G22510 [hydroxyproline-rich glycoprotein family protein] -0.925 0.092
73 251531_at AT3G58550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.790 0.132
74 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.786 0.020
75 262349_at AT2G48130 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.769 -0.072
76 263005_at AT1G54540 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.740 -0.004
77 266900_at AT2G34610 unknown -0.739 0.007
78 258905_at AT3G06390 [Uncharacterised protein family (UPF0497)] -0.733 0.061
79 250200_at AT5G14130 [Peroxidase superfamily protein] -0.725 0.060
80 249289_at AT5G41040 ASFT, aliphatic suberin feruloyl-transferase, HHT, hydroxycinnamoyl- CoA:ω-hydroxyacid O-hydroxycinnamoyltransferase, RWP1, REDUCED LEVELS OF WALL-BOUND PHENOLICS 1 -0.710 0.094
81 245612_at AT4G14440 ATECI3, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, ECI3, DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, HCD1, 3-hydroxyacyl-CoA dehydratase 1 -0.638 -0.170
82 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 -0.623 0.005
83 266968_at AT2G39360 [Protein kinase superfamily protein] -0.614 0.068
84 251652_at AT3G57380 [Glycosyltransferase family 61 protein] -0.581 0.042
85 253699_at AT4G29800 PLA IVD, PLP8, PATATIN-like protein 8 -0.570 0.012
86 246067_at AT5G19410 ABCG23, ATP-binding cassette G23 -0.541 0.079
87 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] -0.522 0.031
88 247672_at AT5G60220 TET4, tetraspanin4 -0.519 0.028
89 255175_at AT4G07960 ATCSLC12, Cellulose-synthase-like C12, CSLC12, CELLULOSE-SYNTHASE LIKE C12, CSLC12, Cellulose-synthase-like C12 -0.518 -0.069
90 263616_at AT2G04680 [Cysteine/Histidine-rich C1 domain family protein] -0.508 0.043
91 263595_at AT2G01890 ATPAP8, PURPLE ACID PHOSPHATASE 8, PAP8, purple acid phosphatase 8 -0.503 0.117
92 260693_at AT1G32450 AtNPF7.3, NPF7.3, NRT1/ PTR family 7.3, NRT1.5, nitrate transporter 1.5 -0.485 -0.004
93 250204_at AT5G13990 ATEXO70C2, exocyst subunit exo70 family protein C2, EXO70C2, exocyst subunit exo70 family protein C2 -0.484 0.115
94 260926_at AT1G21360 GLTP2, glycolipid transfer protein 2 -0.476 0.064
95 266265_at AT2G29340 [NAD-dependent epimerase/dehydratase family protein] -0.453 -0.121
96 261931_at AT1G22430 [GroES-like zinc-binding dehydrogenase family protein] -0.452 -0.013
97 260366_at AT1G70460 AtPERK13, proline-rich extensin-like receptor kinase 13, PERK13, proline-rich extensin-like receptor kinase 13, RHS10, root hair specific 10 -0.430 0.066
98 262339_at AT1G64000 ATWRKY56, WRKY56, WRKY DNA-binding protein 56 -0.429 0.092
99 261377_at AT1G18850 unknown -0.421 0.080
100 254187_at AT4G23890 CRR31, CHLORORESPIRATORY REDUCTION 31, NdhS, NADH dehydrogenase-like complex S -0.412 -0.030
101 253909_at AT4G27270 [Quinone reductase family protein] -0.405 -0.043
102 266670_at AT2G29740 UGT71C2, UDP-glucosyl transferase 71C2 -0.402 0.033
103 248205_at AT5G54300 unknown -0.388 -0.292
104 249475_at AT5G38890 [Nucleic acid-binding, OB-fold-like protein] -0.385 0.015
105 267472_at AT2G02850 ARPN, plantacyanin -0.379 0.065
106 250868_at AT5G03860 MLS, malate synthase -0.375 0.029
107 247570_at AT5G61250 AtGUS1, glucuronidase 1, GUS1, glucuronidase 1 -0.365 0.047
108 248151_at AT5G54270 LHCB3, light-harvesting chlorophyll B-binding protein 3, LHCB3*1 -0.363 -0.094
109 251964_at AT3G53370 [S1FA-like DNA-binding protein] -0.359 -0.005
110 264708_at AT1G09740 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.353 0.041
111 249085_at AT5G44170 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.344 -0.073
112 256542_at AT1G42550 PMI1, PLASTID MOVEMENT IMPAIRED1 -0.342 0.019
113 263224_at AT1G30580 [GTP binding] -0.337 0.005
114 259193_at AT3G01480 ATCYP38, ARABIDOPSIS CYCLOPHILIN 38, CYP38, cyclophilin 38 -0.334 -0.038
115 263679_at AT1G59990 EMB3108, EMBRYO DEFECTIVE 3108, HS3, HEAVY SEED 3, RH22, RNA helicase 22 -0.333 0.011
116 245937_at AT5G19750 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] -0.333 0.017
117 255558_at AT4G01900 GLB1, GLNB1 homolog, PII -0.327 -0.054
118 254089_at AT4G24800 ECIP1, EIN2 C-terminus Interacting Protein 1 -0.327 -0.127
119 260611_at AT2G43670 [Carbohydrate-binding X8 domain superfamily protein] -0.324 0.036
120 245300_at AT4G16350 CBL6, calcineurin B-like protein 6, SCABP2, SOS3-LIKE CALCIUM BINDING PROTEIN 2 -0.323 0.046
121 262418_at AT1G50320 ATHX, thioredoxin X, ATX, THIOREDOXIN X, THX, thioredoxin X -0.318 0.033
122 266903_at AT2G34570 MEE21, maternal effect embryo arrest 21 -0.311 0.041
123 265931_at AT2G18520 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.309 -0.011
124 253734_at AT4G29180 RHS16, root hair specific 16 -0.309 0.075
125 261417_at AT1G07700 [Thioredoxin superfamily protein] -0.306 -0.006
126 254787_at AT4G12690 unknown -0.305 0.043
127 256358_at AT1G66470 AtRHD6, RHD6, ROOT HAIR DEFECTIVE6 -0.305 0.085
128 253305_at AT4G33666 unknown -0.298 -0.183
129 247831_at AT5G58540 [Protein kinase superfamily protein] -0.294 0.077
130 264206_at AT1G22730 [MA3 domain-containing protein] -0.290 0.000
131 260394_at AT1G74080 ATMYB122, MYB DOMAIN PROTEIN 122, MYB122, myb domain protein 122 -0.290 0.157
132 251727_at AT3G56290 unknown -0.285 0.047
133 252900_at AT4G39540 ATSK2, SK2, shikimate kinase 2 -0.283 -0.054
134 247356_at AT5G63800 BGAL6, beta-galactosidase 6, MUM2, MUCILAGE-MODIFIED 2 -0.272 0.028
135 258657_at AT3G09890 [Ankyrin repeat family protein] -0.271 0.016