4.0:Information of module
whole roots 140 mM NaCl 4 hour
In comparison with Dark 3day wt help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 1.075e-13
GO:0010035 response to inorganic substance BP 8.120e-13
GO:0042221 response to chemical BP 3.529e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006790 sulfur compound metabolic process BP 9.362e-04
GO:0034754 cellular hormone metabolic process BP 9.628e-04
GO:0044271 cellular nitrogen compound biosynthetic ... BP 1.001e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
whole roots 140 mM NaCl 4 hour		 Log2 signal ratio
Dark 3day wt
1 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 1.687 5.207
2 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] 1.384 3.300
3 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] 1.164 4.383
4 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 1.147 3.964
5 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related 1.144 11.018
6 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 1.048 0.481
7 252073_at AT3G51750 unknown 1.022 -1.735
8 254823_at AT4G12580 unknown 1.018 -3.825
9 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a 0.957 2.478
10 262148_at AT1G52560 [HSP20-like chaperones superfamily protein] 0.947 -0.794
11 266274_at AT2G29380 HAI3, highly ABA-induced PP2C gene 3 0.908 -0.281
12 255795_at AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 0.875 2.098
13 253182_at AT4G35190 LOG5, LONELY GUY 5 0.852 -0.966
14 250624_at AT5G07330 unknown 0.831 4.663
15 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] 0.823 1.634
16 267080_at AT2G41190 [Transmembrane amino acid transporter family protein] 0.821 6.728
17 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 0.819 3.392
18 265922_at AT2G18480 [Major facilitator superfamily protein] 0.814 -1.523
19 261077_at AT1G07430 AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, HAI2, highly ABA-induced PP2C gene 2, HON, HONSU (Korean for abnormal drowsiness) 0.805 6.533
20 264612_at AT1G04560 [AWPM-19-like family protein] 0.795 -0.049
21 266690_at AT2G19900 ATNADP-ME1, Arabidopsis thaliana NADP-malic enzyme 1, NADP-ME1, NADP-malic enzyme 1 0.770 0.867
22 247723_at AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 0.767 7.126
23 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.728 -4.531
24 245982_at AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 0.716 -0.049
25 257672_at AT3G20300 unknown 0.697 2.835
26 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 0.674 3.941
27 254667_at AT4G18280 [glycine-rich cell wall protein-related] 0.660 3.701
28 254809_at AT4G12410 SAUR35, SMALL AUXIN UPREGULATED RNA 35 0.652 1.124
29 246241_at AT4G37050 AtPLAIVC, phospholipase A IVC, PLA V, PLAIII{beta}, patatin-related phospholipase III beta, PLP4, PATATIN-like protein 4 0.636 0.481
30 256114_at AT1G16850 unknown 0.623 7.753
31 260561_at AT2G43580 [Chitinase family protein] 0.620 -0.050
32 264217_at AT1G60190 AtPUB19, PUB19, plant U-box 19 0.606 4.825
33 253293_at AT4G33905 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.578 2.671
34 258695_at AT3G09640 APX1B, ASCORBATE PEROXIDASE 1B, APX2, ascorbate peroxidase 2 0.573 -0.049
35 250859_at AT5G04660 CYP77A4, cytochrome P450, family 77, subfamily A, polypeptide 4 0.568 -2.327
36 251188_at AT3G62730 unknown 0.554 -0.049
37 263881_at AT2G21820 unknown 0.540 7.456
38 247120_at AT5G65990 [Transmembrane amino acid transporter family protein] 0.532 0.089
39 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 -0.832 -3.205
40 259388_at AT1G13420 ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ST4B, sulfotransferase 4B -0.735 -0.966
41 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -0.634 -5.299
42 257373_at AT2G43140 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.553 -1.582
43 257467_at AT1G31320 LBD4, LOB domain-containing protein 4 -0.546 -3.561
44 251677_at AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 -0.524 -5.692
45 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.511 -0.967
46 262091_at AT1G56160 ATMYB72, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, MYB72, myb domain protein 72 -0.488 -0.049
47 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 -0.485 -2.964
48 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 -0.483 1.560
49 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] -0.478 -0.049
50 255608_at AT4G01140 unknown -0.452 0.702
51 248723_at AT5G47950 [HXXXD-type acyl-transferase family protein] -0.439 1.631
52 249535_at AT5G38820 [Transmembrane amino acid transporter family protein] -0.437 -0.049
53 255814_at AT1G19900 [glyoxal oxidase-related protein] -0.416 -0.049
54 247116_at AT5G65970 ATMLO10, MILDEW RESISTANCE LOCUS O 10, MLO10, MILDEW RESISTANCE LOCUS O 10 -0.396 -1.615
55 262863_at AT1G64910 [UDP-Glycosyltransferase superfamily protein] -0.387 -0.049
56 260704_at AT1G32470 [Single hybrid motif superfamily protein] -0.328 -4.111
57 252433_at AT3G47560 [alpha/beta-Hydrolases superfamily protein] -0.317 -2.583
58 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 -0.308 0.228
59 264587_at AT1G05200 ATGLR3.4, glutamate receptor 3.4, GLR3.4, glutamate receptor 3.4, GLUR3 -0.291 0.075
60 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 -0.288 -5.534
61 246844_at AT5G26660 ATMYB86, myb domain protein 86, MYB86, myb domain protein 86 -0.286 -0.605
62 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase -0.275 -5.060
63 246093_at AT5G20550 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.267 -0.049
64 262898_at AT1G59850 [ARM repeat superfamily protein] -0.263 0.397
65 246584_at AT5G14730 unknown -0.242 -1.956
66 261545_at AT1G63530 unknown -0.241 2.429
67 265175_at AT1G23480 ATCSLA03, cellulose synthase-like A3, ATCSLA3, CSLA03, CSLA03, cellulose synthase-like A3, CSLA3, CELLULOSE SYNTHASE-LIKE A3 -0.237 -2.696
68 265545_at AT2G28250 NCRK -0.235 -2.828
69 251255_at AT3G62280 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.234 -0.050
70 256025_at AT1G58370 ATXYN1, ARABIDOPSIS THALIANA XYLANASE 1, RXF12 -0.233 -5.812
71 258938_at AT3G10080 [RmlC-like cupins superfamily protein] -0.232 -4.770
72 264191_at AT1G54730 [Major facilitator superfamily protein] -0.219 1.754
73 256332_at AT1G76890 AT-GT2, GT2 -0.208 0.576
74 261434_at AT1G07650 [Leucine-rich repeat transmembrane protein kinase] -0.207 2.132
75 254606_at AT4G19030 AT-NLM1, ATNLM1, NOD26-LIKE MAJOR INTRINSIC PROTEIN 1, NIP1;1, NOD26-LIKE INTRINSIC PROTEIN 1;1, NLM1, NOD26-like major intrinsic protein 1 -0.205 -0.049