4.0:Information of module
whole roots 140 mM NaCl 30 minutes
In comparison with npr1 sni1 brca2a SA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 1.499e-24
GO:0010243 response to organonitrogen compound BP 2.254e-24
GO:0009719 response to endogenous stimulus BP 2.097e-21
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0032989 cellular component morphogenesis BP 1.765e-04
GO:0000904 cell morphogenesis involved in different... BP 2.189e-04
GO:0043603 cellular amide metabolic process BP 2.966e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
whole roots 140 mM NaCl 30 minutes		 Log2 signal ratio
npr1 sni1 brca2a SA
1 258325_at AT3G22830 AT-HSFA6B, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, HSFA6B, heat shock transcription factor A6B 0.927 0.055
2 263742_at AT2G20625 unknown 0.868 -0.047
3 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 0.791 -0.324
4 257163_at AT3G24310 ATMYB71, MYB DOMAIN PROTEIN 71, MYB305, myb domain protein 305 0.775 0.043
5 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 0.749 0.035
6 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 0.745 -0.380
7 264217_at AT1G60190 AtPUB19, PUB19, plant U-box 19 0.726 -0.335
8 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.724 -0.422
9 260744_at AT1G15010 unknown 0.715 -0.441
10 266841_at AT2G26150 ATHSFA2, heat shock transcription factor A2, HSFA2, heat shock transcription factor A2 0.594 -0.003
11 252557_at AT3G45960 ATEXLA3, expansin-like A3, ATEXPL3, ATHEXP BETA 2.3, EXLA3, expansin-like A3, EXPL3 0.592 -0.153
12 245677_at AT1G56660 unknown 0.575 -0.243
13 245906_at AT5G11070 unknown 0.575 -0.040
14 248392_at AT5G52050 [MATE efflux family protein] 0.535 -0.352
15 259879_at AT1G76650 CML38, calmodulin-like 38 0.533 -0.812
16 250098_at AT5G17350 unknown 0.526 -0.457
17 253643_at AT4G29780 unknown 0.518 -0.698
18 256442_at AT3G10930 unknown 0.517 -0.567
19 247723_at AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 0.504 -0.166
20 267357_at AT2G40000 ATHSPRO2, ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, HSPRO2, ortholog of sugar beet HS1 PRO-1 2 0.496 -0.151
21 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.495 -0.254
22 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 0.491 -0.099
23 259442_at AT1G02310 MAN1, endo-beta-mannanase 1 0.482 -0.052
24 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 0.479 -0.419
25 267069_at AT2G41010 ATCAMBP25, calmodulin (CAM)-binding protein of 25 kDa, CAMBP25, calmodulin (CAM)-binding protein of 25 kDa 0.478 -0.273
26 245777_at AT1G73540 atnudt21, nudix hydrolase homolog 21, NUDT21, nudix hydrolase homolog 21 0.475 -0.320
27 258606_at AT3G02840 [ARM repeat superfamily protein] 0.466 -0.779
28 266656_at AT2G25900 ATCTH, ATTZF1, A. THALIANA TANDEM ZINC FINGER PROTEIN 1 0.461 0.051
29 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C 0.445 0.032
30 258878_at AT3G03170 unknown 0.444 -0.036
31 247177_at AT5G65300 unknown 0.421 -0.376
32 265732_at AT2G01300 unknown 0.403 -0.213
33 260770_at AT1G49200 [RING/U-box superfamily protein] 0.399 0.081
34 253830_at AT4G27652 unknown 0.392 -0.373
35 250053_at AT5G17850 [Sodium/calcium exchanger family protein] 0.382 -0.142
36 254120_at AT4G24570 DIC2, dicarboxylate carrier 2 0.381 -0.619
37 251971_at AT3G53160 UGT73C7, UDP-glucosyl transferase 73C7 0.379 0.025
38 245711_at AT5G04340 C2H2, CZF2, COLD INDUCED ZINC FINGER PROTEIN 2, ZAT6, zinc finger of Arabidopsis thaliana 6 0.376 -0.338
39 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 -0.425 0.016
40 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] -0.413 0.013
41 246844_at AT5G26660 ATMYB86, myb domain protein 86, MYB86, myb domain protein 86 -0.393 -0.101
42 260806_at AT1G78260 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.351 -0.029
43 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.294 -0.017
44 256774_at AT3G13760 [Cysteine/Histidine-rich C1 domain family protein] -0.290 0.002
45 258540_at AT3G06990 [Cysteine/Histidine-rich C1 domain family protein] -0.289 -0.043
46 249186_at AT5G43040 [Cysteine/Histidine-rich C1 domain family protein] -0.253 -0.059
47 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 -0.249 -0.297
48 253227_at AT4G35030 [Protein kinase superfamily protein] -0.244 0.058
49 247832_at AT5G58550 EOL2, ETO1-like 2 -0.236 -0.043
50 261825_at AT1G11545 XTH8, xyloglucan endotransglucosylase/hydrolase 8 -0.230 0.057
51 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 -0.227 0.079
52 266715_at AT2G46780 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.225 -0.019
53 260161_at AT1G79860 ATROPGEF12, MEE64, MATERNAL EFFECT EMBRYO ARREST 64, ROPGEF12, ROP (rho of plants) guanine nucleotide exchange factor 12 -0.225 -0.015
54 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 -0.215 -0.023
55 245037_at AT2G26420 PIP5K3, 1-phosphatidylinositol-4-phosphate 5-kinase 3 -0.213 0.002
56 263382_at AT2G40230 [HXXXD-type acyl-transferase family protein] -0.201 0.037
57 249144_at AT5G43270 SPL2, squamosa promoter binding protein-like 2 -0.199 0.098
58 263226_at AT1G30690 [Sec14p-like phosphatidylinositol transfer family protein] -0.187 0.042
59 255181_at AT4G08110 [CACTA-like transposase family (Ptta/En/Spm), has a 4.2e-66 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.182 -0.011
60 259134_at AT3G05390 unknown -0.179 -0.021
61 251771_at AT3G56000 ATCSLA14, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A14, CSLA14, cellulose synthase like A14 -0.165 0.052
62 267434_at AT2G26260 3BETAHSD/D2, 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2, AT3BETAHSD/D2, 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 -0.165 -0.009
63 261505_at AT1G71696 SOL1, SUPPRESSOR OF LLP1 1 -0.165 0.024
64 262898_at AT1G59850 [ARM repeat superfamily protein] -0.163 0.068
65 246229_at AT4G37160 sks15, SKU5 similar 15 -0.161 -0.008
66 264114_at AT2G31270 ATCDT1A, ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, CDT1, ARABIDOPSIS HOMOLOG OF YEAST CDT1, CDT1A, homolog of yeast CDT1 A -0.157 0.012
67 263085_at AT2G16090 ARI2, ARIADNE 2, ATARI2, ARABIDOPSIS ARIADNE 2 -0.150 -0.010
68 265056_at AT1G51980 [Insulinase (Peptidase family M16) protein] -0.147 0.002
69 255571_at AT4G01220 MGP4, male gametophyte defective 4 -0.145 0.028
70 263618_at AT2G04660 APC2, anaphase-promoting complex/cyclosome 2 -0.145 -0.041
71 248916_at AT5G45840 [Leucine-rich repeat protein kinase family protein] -0.141 0.060
72 262868_at AT1G64980 CDI, cadmium 2+ induced -0.135 -0.043
73 259527_at AT1G12600 [UDP-N-acetylglucosamine (UAA) transporter family] -0.134 0.004
74 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 -0.133 0.100
75 263412_at AT2G28720 [Histone superfamily protein] -0.133 -0.018