4.0:Information of module
whole roots 140 mM NaCl 16 hour
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 7.224e-10
GO:0042221 response to chemical BP 1.542e-09
GO:0050896 response to stimulus BP 2.103e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009987 cellular process BP 4.188e-08
GO:0000302 response to reactive oxygen species BP 6.508e-08
GO:0071704 organic substance metabolic process BP 2.204e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
whole roots 140 mM NaCl 16 hour		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 1.573 1.499
2 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] 1.405 1.076
3 256779_at AT3G13784 AtcwINV5, cell wall invertase 5, CWINV5, cell wall invertase 5 1.249 -0.399
4 254823_at AT4G12580 unknown 1.160 -0.927
5 266274_at AT2G29380 HAI3, highly ABA-induced PP2C gene 3 0.909 -0.560
6 250624_at AT5G07330 unknown 0.831 0.730
7 245982_at AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 0.824 0.589
8 262148_at AT1G52560 [HSP20-like chaperones superfamily protein] 0.817 -1.568
9 266690_at AT2G19900 ATNADP-ME1, Arabidopsis thaliana NADP-malic enzyme 1, NADP-ME1, NADP-malic enzyme 1 0.806 0.043
10 247718_at AT5G59310 LTP4, lipid transfer protein 4 0.794 0.168
11 246241_at AT4G37050 AtPLAIVC, phospholipase A IVC, PLA V, PLAIII{beta}, patatin-related phospholipase III beta, PLP4, PATATIN-like protein 4 0.792 -1.057
12 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 0.731 0.531
13 247723_at AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 0.725 -0.746
14 261077_at AT1G07430 AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, HAI2, highly ABA-induced PP2C gene 2, HON, HONSU (Korean for abnormal drowsiness) 0.722 -0.095
15 254809_at AT4G12410 SAUR35, SMALL AUXIN UPREGULATED RNA 35 0.721 0.131
16 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] 0.709 0.223
17 252515_at AT3G46230 ATHSP17.4, ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, HSP17.4, heat shock protein 17.4 0.676 -1.038
18 265922_at AT2G18480 [Major facilitator superfamily protein] 0.633 -0.943
19 257672_at AT3G20300 unknown 0.624 -0.316
20 247421_at AT5G62800 [Protein with RING/U-box and TRAF-like domains] 0.618 -0.635
21 248333_at AT5G52390 [PAR1 protein] 0.613 -0.284
22 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.595 -0.667
23 248184_at AT5G54050 [Cysteine/Histidine-rich C1 domain family protein] 0.582 -0.276
24 254667_at AT4G18280 [glycine-rich cell wall protein-related] 0.573 -0.604
25 259618_at AT1G48000 AtMYB112, myb domain protein 112, MYB112, myb domain protein 112 0.566 -1.318
26 250859_at AT5G04660 CYP77A4, cytochrome P450, family 77, subfamily A, polypeptide 4 0.564 -0.335
27 248505_at AT5G50360 unknown 0.551 -0.065
28 248392_at AT5G52050 [MATE efflux family protein] 0.537 -0.055
29 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 0.530 -0.718
30 256114_at AT1G16850 unknown 0.522 0.316
31 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.506 -0.826
32 252321_at AT3G48510 unknown 0.499 -0.020
33 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 0.495 -0.602
34 261266_at AT1G26770 AT-EXP10, ARABIDOPSIS THALIANA EXPANSIN 10, ATEXP10, ARABIDOPSIS THALIANA EXPANSIN 10, ATEXPA10, expansin A10, ATHEXP ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, EXP10, EXPANSIN 10, EXPA10, expansin A10 0.475 0.618
35 267391_at AT2G44480 BGLU17, beta glucosidase 17 0.473 -1.519
36 247657_at AT5G59845 [Gibberellin-regulated family protein] 0.468 -0.526
37 258695_at AT3G09640 APX1B, ASCORBATE PEROXIDASE 1B, APX2, ascorbate peroxidase 2 0.462 -0.712
38 265823_at AT2G35760 [Uncharacterised protein family (UPF0497)] 0.458 -0.377
39 245953_at AT5G28520 [Mannose-binding lectin superfamily protein] 0.449 0.374
40 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 0.447 0.193
41 247120_at AT5G65990 [Transmembrane amino acid transporter family protein] 0.436 0.454
42 246617_at AT5G36270 [similar to DHAR2, glutathione dehydrogenase (ascorbate) [Arabidopsis thaliana] (TAIR:AT1G75270.1)] 0.432 -0.110
43 252888_at AT4G39210 APL3 0.432 0.598
44 263959_at AT2G36210 SAUR45, SMALL AUXIN UPREGULATED RNA 45 0.416 -0.857
45 257135_at AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.947 -0.288
46 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -0.870 -0.996
47 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] -0.601 -0.416
48 262091_at AT1G56160 ATMYB72, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, MYB72, myb domain protein 72 -0.554 -0.956
49 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 -0.535 0.320
50 253044_at AT4G37290 unknown -0.518 -0.520
51 257373_at AT2G43140 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.507 0.419
52 264734_at AT1G62280 SLAH1, SLAC1 homologue 1 -0.483 -0.948
53 247293_at AT5G64510 TIN1, tunicamycin induced 1 -0.450 -0.389
54 262039_at AT1G80050 APT2, adenine phosphoribosyl transferase 2, ATAPT2, PHT1.1 -0.440 -0.904
55 251195_at AT3G62930 [Thioredoxin superfamily protein] -0.435 -0.548
56 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.382 0.586
57 262162_at AT1G78020 unknown -0.369 0.598
58 251293_at AT3G61930 unknown -0.366 -0.995
59 255814_at AT1G19900 [glyoxal oxidase-related protein] -0.336 -0.866
60 264710_at AT1G09790 COBL6, COBRA-like protein 6 precursor -0.332 0.138
61 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] -0.329 -0.906
62 253305_at AT4G33666 unknown -0.325 -0.664
63 255876_at AT2G40480 unknown -0.323 -0.037
64 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 -0.323 -0.295
65 253696_at AT4G29740 ATCKX4, CKX4, cytokinin oxidase 4 -0.320 -0.427
66 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.316 0.099
67 264832_at AT1G03660 [Ankyrin-repeat containing protein] -0.310 -0.409
68 246104_at AT5G28650 ATWRKY74, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY74, WRKY DNA-binding protein 74 -0.294 -0.347
69 256359_at AT1G66460 [Protein kinase superfamily protein] -0.293 -0.255
70 257334_at ATMG01370 ORF111D -0.292 -0.262
71 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 -0.278 -0.391
72 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 -0.269 0.919
73 250471_at AT5G10170 ATMIPS3, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, MIPS3, myo-inositol-1-phosphate synthase 3 -0.266 -0.064
74 267483_at AT2G02810 ATUTR1, UDP-GALACTOSE TRANSPORTER 1, UTR1, UDP-galactose transporter 1 -0.257 1.074
75 266711_at AT2G46740 AtGulLO5, GulLO5, L -gulono-1,4-lactone ( L -GulL) oxidase 5 -0.246 0.826
76 251420_at AT3G60490 [Integrase-type DNA-binding superfamily protein] -0.243 -0.233
77 251886_at AT3G54260 TBL36, TRICHOME BIREFRINGENCE-LIKE 36 -0.230 -0.568
78 260034_at AT1G68810 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.226 -0.106
79 252374_at AT3G48100 ARR5, response regulator 5, ATRR2, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, IBC6, INDUCED BY CYTOKININ 6, RR5, response regulator 5 -0.225 -0.372
80 247755_at AT5G59090 ATSBT4.12, subtilase 4.12, SBT4.12, subtilase 4.12 -0.219 -0.355
81 261527_at AT1G14390 [Leucine-rich repeat protein kinase family protein] -0.219 -0.236
82 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.216 0.254
83 252433_at AT3G47560 [alpha/beta-Hydrolases superfamily protein] -0.212 -0.080
84 253227_at AT4G35030 [Protein kinase superfamily protein] -0.210 -1.280
85 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.208 0.125
86 260053_at AT1G78120 TPR12, tetratricopeptide repeat 12 -0.207 -0.791
87 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 -0.204 0.951