4.0:Information of module
whole roots 140 mM NaCl 16 hour
In comparison with root stele 40 mM NaCls help
Scatter plot of seleted modules.
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 7.224e-10
GO:0042221 response to chemical BP 1.542e-09
GO:0050896 response to stimulus BP 2.103e-09
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GOID Term Ontology p-value
GO:0009987 cellular process BP 4.188e-08
GO:0000302 response to reactive oxygen species BP 6.508e-08
GO:0071704 organic substance metabolic process BP 2.204e-06
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List of genes in module
・・・up requlated genes  ・・・down regulated genes
probeID AGICode Annotation Log2 signal ratio
whole roots 140 mM NaCl 16 hour
Log2 signal ratio
root stele 40 mM NaCls
1 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 1.573 1.383
2 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] 1.405 1.139
3 256779_at AT3G13784 AtcwINV5, cell wall invertase 5, CWINV5, cell wall invertase 5 1.249 -0.060
4 254823_at AT4G12580 unknown 1.160 0.620
5 266274_at AT2G29380 HAI3, highly ABA-induced PP2C gene 3 0.909 0.356
6 250624_at AT5G07330 unknown 0.831 0.736
7 245982_at AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 0.824 -0.086
8 262148_at AT1G52560 [HSP20-like chaperones superfamily protein] 0.817 1.266
9 266690_at AT2G19900 ATNADP-ME1, Arabidopsis thaliana NADP-malic enzyme 1, NADP-ME1, NADP-malic enzyme 1 0.806 0.131
10 247718_at AT5G59310 LTP4, lipid transfer protein 4 0.794 -0.044
11 246241_at AT4G37050 AtPLAIVC, phospholipase A IVC, PLA V, PLAIII{beta}, patatin-related phospholipase III beta, PLP4, PATATIN-like protein 4 0.792 -0.008
12 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 0.731 0.963
13 247723_at AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 0.725 0.476
14 261077_at AT1G07430 AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, HAI2, highly ABA-induced PP2C gene 2, HON, HONSU (Korean for abnormal drowsiness) 0.722 0.932
15 254809_at AT4G12410 SAUR35, SMALL AUXIN UPREGULATED RNA 35 0.721 0.594
16 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] 0.709 0.527
17 252515_at AT3G46230 ATHSP17.4, ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, HSP17.4, heat shock protein 17.4 0.676 0.814
18 265922_at AT2G18480 [Major facilitator superfamily protein] 0.633 -0.061
19 257672_at AT3G20300 unknown 0.624 0.436
20 247421_at AT5G62800 [Protein with RING/U-box and TRAF-like domains] 0.618 -0.077
21 248333_at AT5G52390 [PAR1 protein] 0.613 -0.022
22 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.595 0.409
23 248184_at AT5G54050 [Cysteine/Histidine-rich C1 domain family protein] 0.582 -0.051
24 254667_at AT4G18280 [glycine-rich cell wall protein-related] 0.573 0.619
25 259618_at AT1G48000 AtMYB112, myb domain protein 112, MYB112, myb domain protein 112 0.566 0.438
26 250859_at AT5G04660 CYP77A4, cytochrome P450, family 77, subfamily A, polypeptide 4 0.564 0.031
27 248505_at AT5G50360 unknown 0.551 0.216
28 248392_at AT5G52050 [MATE efflux family protein] 0.537 0.511
29 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 0.530 -0.082
30 256114_at AT1G16850 unknown 0.522 0.552
31 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.506 0.021
32 252321_at AT3G48510 unknown 0.499 0.541
33 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 0.495 0.760
34 261266_at AT1G26770 AT-EXP10, ARABIDOPSIS THALIANA EXPANSIN 10, ATEXP10, ARABIDOPSIS THALIANA EXPANSIN 10, ATEXPA10, expansin A10, ATHEXP ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, EXP10, EXPANSIN 10, EXPA10, expansin A10 0.475 -0.095
35 267391_at AT2G44480 BGLU17, beta glucosidase 17 0.473 0.016
36 247657_at AT5G59845 [Gibberellin-regulated family protein] 0.468 0.419
37 258695_at AT3G09640 APX1B, ASCORBATE PEROXIDASE 1B, APX2, ascorbate peroxidase 2 0.462 0.062
38 265823_at AT2G35760 [Uncharacterised protein family (UPF0497)] 0.458 0.402
39 245953_at AT5G28520 [Mannose-binding lectin superfamily protein] 0.449 -0.045
40 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 0.447 -0.148
41 247120_at AT5G65990 [Transmembrane amino acid transporter family protein] 0.436 0.556
42 246617_at AT5G36270 [similar to DHAR2, glutathione dehydrogenase (ascorbate) [Arabidopsis thaliana] (TAIR:AT1G75270.1)] 0.432 -0.111
43 252888_at AT4G39210 APL3 0.432 -0.160
44 263959_at AT2G36210 SAUR45, SMALL AUXIN UPREGULATED RNA 45 0.416 -0.055
45 257135_at AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.947 -0.135
46 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -0.870 0.265
47 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] -0.601 -0.123
48 262091_at AT1G56160 ATMYB72, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, MYB72, myb domain protein 72 -0.554 -0.077
49 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 -0.535 -0.158
50 253044_at AT4G37290 unknown -0.518 0.277
51 257373_at AT2G43140 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.507 -0.108
52 264734_at AT1G62280 SLAH1, SLAC1 homologue 1 -0.483 -0.077
53 247293_at AT5G64510 TIN1, tunicamycin induced 1 -0.450 0.546
54 262039_at AT1G80050 APT2, adenine phosphoribosyl transferase 2, ATAPT2, PHT1.1 -0.440 0.130
55 251195_at AT3G62930 [Thioredoxin superfamily protein] -0.435 -0.241
56 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.382 -0.162
57 262162_at AT1G78020 unknown -0.369 0.072
58 251293_at AT3G61930 unknown -0.366 0.147
59 255814_at AT1G19900 [glyoxal oxidase-related protein] -0.336 -0.591
60 264710_at AT1G09790 COBL6, COBRA-like protein 6 precursor -0.332 -0.163
61 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] -0.329 -0.447
62 253305_at AT4G33666 unknown -0.325 0.511
63 255876_at AT2G40480 unknown -0.323 0.087
64 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 -0.323 0.276
65 253696_at AT4G29740 ATCKX4, CKX4, cytokinin oxidase 4 -0.320 -0.160
66 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.316 -0.149
67 264832_at AT1G03660 [Ankyrin-repeat containing protein] -0.310 -0.081
68 246104_at AT5G28650 ATWRKY74, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY74, WRKY DNA-binding protein 74 -0.294 -0.029
69 256359_at AT1G66460 [Protein kinase superfamily protein] -0.293 0.056
70 257334_at ATMG01370 ORF111D -0.292 -0.210
71 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 -0.278 0.262
72 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 -0.269 -0.171
73 250471_at AT5G10170 ATMIPS3, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, MIPS3, myo-inositol-1-phosphate synthase 3 -0.266 -0.275
74 267483_at AT2G02810 ATUTR1, UDP-GALACTOSE TRANSPORTER 1, UTR1, UDP-galactose transporter 1 -0.257 0.032
75 266711_at AT2G46740 AtGulLO5, GulLO5, L -gulono-1,4-lactone ( L -GulL) oxidase 5 -0.246 0.474
76 251420_at AT3G60490 [Integrase-type DNA-binding superfamily protein] -0.243 0.101
77 251886_at AT3G54260 TBL36, TRICHOME BIREFRINGENCE-LIKE 36 -0.230 -0.127
78 260034_at AT1G68810 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.226 0.048
79 252374_at AT3G48100 ARR5, response regulator 5, ATRR2, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, IBC6, INDUCED BY CYTOKININ 6, RR5, response regulator 5 -0.225 -0.272
80 247755_at AT5G59090 ATSBT4.12, subtilase 4.12, SBT4.12, subtilase 4.12 -0.219 0.077
81 261527_at AT1G14390 [Leucine-rich repeat protein kinase family protein] -0.219 -0.267
82 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.216 0.037
83 252433_at AT3G47560 [alpha/beta-Hydrolases superfamily protein] -0.212 0.178
84 253227_at AT4G35030 [Protein kinase superfamily protein] -0.210 -0.321
85 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.208 -0.151
86 260053_at AT1G78120 TPR12, tetratricopeptide repeat 12 -0.207 0.159
87 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 -0.204 -0.165