4.0:Information of module
whole roots 140 mM NaCl 1 hour
In comparison with Imbibed 1 h (seed) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 1.034e-30
GO:1901700 response to oxygen-containing compound BP 6.514e-27
GO:0010033 response to organic substance BP 1.147e-25
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010054 trichoblast differentiation BP 4.901e-11
GO:0010053 root epidermal cell differentiation BP 7.499e-11
GO:0090627 plant epidermal cell differentiation BP 1.261e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
whole roots 140 mM NaCl 1 hour		 Log2 signal ratio
Imbibed 1 h (seed)
1 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 1.163 0.024
2 258325_at AT3G22830 AT-HSFA6B, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, HSFA6B, heat shock transcription factor A6B 1.132 0.011
3 257163_at AT3G24310 ATMYB71, MYB DOMAIN PROTEIN 71, MYB305, myb domain protein 305 1.061 -0.007
4 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 0.881 0.041
5 263742_at AT2G20625 unknown 0.875 0.024
6 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.842 -0.019
7 264217_at AT1G60190 AtPUB19, PUB19, plant U-box 19 0.833 -0.036
8 261077_at AT1G07430 AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, HAI2, highly ABA-induced PP2C gene 2, HON, HONSU (Korean for abnormal drowsiness) 0.831 -0.057
9 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] 0.824 0.027
10 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 0.809 0.028
11 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 0.794 -0.026
12 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 0.758 0.015
13 266841_at AT2G26150 ATHSFA2, heat shock transcription factor A2, HSFA2, heat shock transcription factor A2 0.750 0.211
14 260744_at AT1G15010 unknown 0.746 0.144
15 247723_at AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 0.738 -0.010
16 251156_at AT3G63060 EDL3, EID1-like 3 0.693 0.049
17 258606_at AT3G02840 [ARM repeat superfamily protein] 0.689 0.086
18 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] 0.672 0.124
19 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 0.668 -0.008
20 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.665 0.069
21 251971_at AT3G53160 UGT73C7, UDP-glucosyl transferase 73C7 0.636 -0.050
22 252557_at AT3G45960 ATEXLA3, expansin-like A3, ATEXPL3, ATHEXP BETA 2.3, EXLA3, expansin-like A3, EXPL3 0.628 0.026
23 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 0.626 -0.033
24 265024_at AT1G24600 unknown 0.615 0.014
25 259879_at AT1G76650 CML38, calmodulin-like 38 0.593 0.223
26 264202_at AT1G22810 [Integrase-type DNA-binding superfamily protein] 0.583 -0.070
27 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 0.577 0.031
28 248392_at AT5G52050 [MATE efflux family protein] 0.576 -0.042
29 245677_at AT1G56660 unknown 0.572 0.200
30 252073_at AT3G51750 unknown 0.566 0.128
31 245906_at AT5G11070 unknown 0.564 0.159
32 259442_at AT1G02310 MAN1, endo-beta-mannanase 1 0.560 0.105
33 249197_at AT5G42380 CML37, calmodulin like 37 0.558 0.028
34 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 0.555 -0.020
35 265216_at AT1G05100 MAPKKK18, mitogen-activated protein kinase kinase kinase 18 0.550 -0.058
36 246018_at AT5G10695 unknown 0.549 0.239
37 251751_at AT3G55720 unknown 0.547 -0.084
38 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C 0.535 0.185
39 247061_at AT5G66780 unknown 0.531 0.018
40 256430_at AT3G11020 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2B, DRE/CRT-binding protein 2B 0.527 0.256
41 264389_at AT1G11960 [ERD (early-responsive to dehydration stress) family protein] 0.504 0.004
42 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related 0.502 -0.004
43 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 0.487 -0.020
44 256442_at AT3G10930 unknown 0.478 0.026
45 251644_at AT3G57540 [Remorin family protein] 0.474 -0.097
46 267058_at AT2G32510 MAPKKK17, mitogen-activated protein kinase kinase kinase 17 0.473 -0.035
47 260276_at AT1G80450 [VQ motif-containing protein] 0.469 0.059
48 250053_at AT5G17850 [Sodium/calcium exchanger family protein] 0.464 0.027
49 253643_at AT4G29780 unknown 0.462 0.135
50 245777_at AT1G73540 atnudt21, nudix hydrolase homolog 21, NUDT21, nudix hydrolase homolog 21 0.459 0.004
51 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] 0.457 0.052
52 250098_at AT5G17350 unknown 0.453 0.456
53 247177_at AT5G65300 unknown 0.446 0.224
54 260357_at AT1G69260 AFP1, ABI five binding protein 0.445 -0.056
55 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.444 0.013
56 267357_at AT2G40000 ATHSPRO2, ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, HSPRO2, ortholog of sugar beet HS1 PRO-1 2 0.443 0.014
57 258878_at AT3G03170 unknown 0.435 0.050
58 252321_at AT3G48510 unknown 0.434 -0.033
59 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.431 -0.045
60 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 0.428 0.018
61 248764_at AT5G47640 NF-YB2, nuclear factor Y, subunit B2 0.427 -0.043
62 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] -0.594 -0.060
63 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.510 -0.026
64 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 -0.474 0.073
65 255608_at AT4G01140 unknown -0.469 0.019
66 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 -0.441 -0.032
67 246844_at AT5G26660 ATMYB86, myb domain protein 86, MYB86, myb domain protein 86 -0.439 0.005
68 249934_at AT5G22410 RHS18, root hair specific 18 -0.426 0.024
69 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.420 0.004
70 260300_at AT1G80340 ATGA3OX2, ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, GA3OX2, gibberellin 3-oxidase 2, GA4H -0.418 0.020
71 260806_at AT1G78260 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.414 -0.008
72 261772_at AT1G76240 unknown -0.411 -0.075
73 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 -0.400 -0.012
74 259195_at AT3G01730 unknown -0.396 -0.025
75 252172_at AT3G50640 unknown -0.371 -0.033
76 249186_at AT5G43040 [Cysteine/Histidine-rich C1 domain family protein] -0.364 -0.021
77 267013_at AT2G39180 ATCRR2, CCR2, CRINKLY4 related 2 -0.314 -0.013
78 266715_at AT2G46780 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.304 0.034
79 245037_at AT2G26420 PIP5K3, 1-phosphatidylinositol-4-phosphate 5-kinase 3 -0.302 0.116
80 254431_at AT4G20840 [FAD-binding Berberine family protein] -0.299 0.178
81 261825_at AT1G11545 XTH8, xyloglucan endotransglucosylase/hydrolase 8 -0.298 -0.023
82 258736_at AT3G05900 [neurofilament protein-related] -0.284 -0.007
83 256157_at AT1G13580 LAG13, LAG1 longevity assurance homolog 3, LOH3, LAG One Homologue 3 -0.282 -0.092
84 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 -0.265 -0.156
85 253227_at AT4G35030 [Protein kinase superfamily protein] -0.261 0.036
86 257172_at AT3G23700 [Nucleic acid-binding proteins superfamily] -0.246 -0.026
87 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 -0.246 -0.042
88 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] -0.240 0.042
89 263226_at AT1G30690 [Sec14p-like phosphatidylinositol transfer family protein] -0.235 0.047
90 250632_at AT5G07450 CYCP4;3, cyclin p4;3 -0.235 -0.001
91 259888_at AT1G76350 NLP5, NIN-like protein 5 -0.234 -0.042
92 264114_at AT2G31270 ATCDT1A, ARABIDOPSIS HOMOLOG OF YEAST CDT1 A, CDT1, ARABIDOPSIS HOMOLOG OF YEAST CDT1, CDT1A, homolog of yeast CDT1 A -0.234 -0.007
93 246011_at AT5G08330 AtTCP11, TCP11, TCP domain protein 11 -0.231 -0.013
94 247024_at AT5G66985 unknown -0.230 0.117
95 258832_at AT3G07070 [Protein kinase superfamily protein] -0.225 0.022
96 262898_at AT1G59850 [ARM repeat superfamily protein] -0.217 0.003
97 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 -0.213 -0.005
98 266109_at AT2G37890 [Mitochondrial substrate carrier family protein] -0.209 0.006
99 249031_at AT5G44900 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.202 -0.025
100 266007_at AT2G37380 MAKR3, MEMBRANE-ASSOCIATED KINASE REGULATOR 3 -0.202 0.018
101 255576_at AT4G01440 UMAMIT31, Usually multiple acids move in and out Transporters 31 -0.202 -0.054
102 262868_at AT1G64980 CDI, cadmium 2+ induced -0.198 0.004
103 263382_at AT2G40230 [HXXXD-type acyl-transferase family protein] -0.198 0.088
104 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 -0.196 -0.067
105 263959_at AT2G36210 SAUR45, SMALL AUXIN UPREGULATED RNA 45 -0.196 -0.099
106 260059_at AT1G78090 ATTPPB, Arabidopsis thaliana trehalose-6-phosphate phosphatase B, TPPB, trehalose-6-phosphate phosphatase B -0.195 -0.056
107 256275_at AT3G12110 ACT11, actin-11 -0.194 -0.004
108 252105_at AT3G51470 [Protein phosphatase 2C family protein] -0.193 -0.003
109 265029_at AT1G24625 ZFP7, zinc finger protein 7 -0.189 0.051
110 258765_at AT3G10710 RHS12, root hair specific 12 -0.189 -0.019
111 256360_at AT1G66440 [Cysteine/Histidine-rich C1 domain family protein] -0.188 -0.066
112 245637_at AT1G25230 [Calcineurin-like metallo-phosphoesterase superfamily protein] -0.185 0.001
113 265205_at AT2G36660 PAB7, poly(A) binding protein 7 -0.182 0.032
114 250892_at AT5G03760 ATCSLA09, ATCSLA9, CSLA09, CSLA9, CELLULOSE SYNTHASE LIKE A9, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4 -0.182 -0.131
115 255695_at AT4G00080 UNE11, unfertilized embryo sac 11 -0.182 0.046
116 246485_at AT5G16080 AtCXE17, carboxyesterase 17, CXE17, carboxyesterase 17 -0.180 0.031
117 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.174 -0.066
118 261505_at AT1G71696 SOL1, SUPPRESSOR OF LLP1 1 -0.173 0.058
119 251720_at AT3G56160 [Sodium Bile acid symporter family] -0.170 -0.032
120 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.168 -0.020
121 263825_at AT2G40370 LAC5, laccase 5 -0.168 0.082