4.0:Information of module
HSP90 Reduced RNAi-A3
In comparison with WT cotyledons help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 3.543e-15
GO:0044237 cellular metabolic process BP 1.139e-14
GO:0071310 cellular response to organic substance BP 1.890e-14
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 7.103e-07
GO:0015979 photosynthesis BP 1.385e-05
GO:0009765 photosynthesis, light harvesting BP 9.405e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
HSP90 Reduced RNAi-A3		 Log2 signal ratio
WT cotyledons
1 259793_at AT1G64380 [Integrase-type DNA-binding superfamily protein] 0.779 0.042
2 262517_at AT1G17180 ATGSTU25, glutathione S-transferase TAU 25, GSTU25, glutathione S-transferase TAU 25 0.651 -0.796
3 264415_at AT1G43160 RAP2.6, related to AP2 6 0.574 -1.054
4 256603_at AT3G28270 unknown 0.544 0.502
5 265499_at AT2G15480 UGT73B5, UDP-glucosyl transferase 73B5 0.541 0.314
6 258805_at AT3G04010 [O-Glycosyl hydrolases family 17 protein] 0.541 -0.758
7 263210_at AT1G10585 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.540 -0.884
8 256576_at AT3G28210 PMZ, SAP12, STRESS-ASSOCIATED PROTEIN 12 0.537 -0.418
9 255872_at AT2G30360 CIPK11, CBL-INTERACTING PROTEIN KINASE 11, PKS5, PROTEIN KINASE SOS2-LIKE 5, SIP4, SOS3-interacting protein 4, SNRK3.22, SNF1-RELATED PROTEIN KINASE 3.22 0.529 -0.221
10 257085_at AT3G20630 ATUBP14, PER1, phosphate deficiency root hair defective1, TTN6, TITAN6, UBP14, ubiquitin-specific protease 14 0.529 -0.285
11 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 0.517 0.041
12 253799_at AT4G28140 [Integrase-type DNA-binding superfamily protein] 0.517 -1.292
13 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 0.515 -1.293
14 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.509 0.416
15 247723_at AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 0.493 -0.603
16 245776_at AT1G30260 unknown 0.475 -0.350
17 251176_at AT3G63380 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 0.474 -0.989
18 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.463 0.487
19 256252_at AT3G11340 UGT76B1, UDP-dependent glycosyltransferase 76B1 0.458 -0.082
20 251829_at AT3G55020 [Ypt/Rab-GAP domain of gyp1p superfamily protein] 0.445 -0.791
21 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] 0.443 -0.165
22 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 0.434 -1.135
23 263788_at AT2G24580 [FAD-dependent oxidoreductase family protein] 0.417 -0.068
24 252214_at AT3G50260 ATERF#011, CEJ1, cooperatively regulated by ethylene and jasmonate 1, DEAR1, DREB AND EAR MOTIF PROTEIN 1 0.395 -0.030
25 245668_at AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 0.395 0.016
26 248392_at AT5G52050 [MATE efflux family protein] 0.392 0.265
27 255833_at AT2G33390 unknown 0.390 -0.426
28 252250_at AT3G49790 [Carbohydrate-binding protein] 0.387 -0.152
29 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.382 -0.725
30 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 0.379 0.252
31 247541_at AT5G61660 [glycine-rich protein] 0.374 -0.190
32 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 0.368 0.100
33 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 0.366 -0.451
34 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.358 0.131
35 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 0.357 -0.694
36 248322_at AT5G52760 [Copper transport protein family] 0.357 -1.136
37 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.354 -1.309
38 265103_at AT1G31070 GlcNAc1pUT1, N-acetylglucosamine-1-phosphate uridylyltransferase 1 0.353 -0.653
39 259856_at AT1G68440 unknown 0.353 0.191
40 258923_at AT3G10450 SCPL7, serine carboxypeptidase-like 7 0.353 -0.175
41 259445_at AT1G02400 ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1, GA2OX6, gibberellin 2-oxidase 6 0.349 -0.665
42 259219_at AT3G03560 unknown 0.346 -0.229
43 259677_at AT1G77740 PIP5K2, phosphatidylinositol-4-phosphate 5-kinase 2 0.344 0.142
44 246139_at AT5G19900 [PRLI-interacting factor, putative] 0.344 0.659
45 261339_at AT1G35710 [Protein kinase family protein with leucine-rich repeat domain] 0.342 -1.033
46 264001_at AT2G22420 [Peroxidase superfamily protein] 0.341 -0.640
47 245095_at AT2G40860 [protein kinase family protein / protein phosphatase 2C ( PP2C) family protein] 0.341 -0.780
48 263875_at AT2G21970 SEP2, stress enhanced protein 2 0.338 0.141
49 247848_at AT5G58120 [Disease resistance protein (TIR-NBS-LRR class) family] 0.337 0.091
50 254707_at AT4G18010 5PTASE2, myo-inositol polyphosphate 5-phosphatase 2, AT5PTASE2, myo-inositol polyphosphate 5-phosphatase 2, IP5PII, INOSITOL(1,4,5)P3 5-PHOSPHATASE II 0.337 0.925
51 250826_at AT5G05220 unknown 0.333 0.072
52 263653_at AT1G04310 ERS2, ethylene response sensor 2 0.329 -0.355
53 257880_at AT3G16910 AAE7, acyl-activating enzyme 7, ACN1, ACETATE NON-UTILIZING 1 0.324 1.266
54 251259_at AT3G62260 [Protein phosphatase 2C family protein] 0.324 -0.341
55 245699_at AT5G04250 [Cysteine proteinases superfamily protein] 0.322 -0.305
56 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] 0.322 -0.009
57 265620_at AT2G27310 [F-box family protein] 0.319 -0.243
58 254783_at AT4G12830 [alpha/beta-Hydrolases superfamily protein] 0.316 0.844
59 264155_at AT1G65440 GTB1, global transcription factor group B1 0.315 0.431
60 259076_at AT3G02140 AFP4, ABI FIVE BINDING PROTEIN 4, TMAC2, TWO OR MORE ABRES-CONTAINING GENE 2 0.314 -0.008
61 245227_s_at AT1G08410 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.313 0.345
62 266901_at AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B 0.313 -0.138
63 252453_at AT3G47120 [RNA recognition motif (RRM)-containing protein] 0.313 -0.241
64 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 0.313 0.266
65 249702_at AT5G35570 [O-fucosyltransferase family protein] 0.312 0.237
66 257644_at AT3G25780 AOC3, allene oxide cyclase 3 0.308 -0.762
67 266313_at AT2G26980 CIPK3, CBL-interacting protein kinase 3, SnRK3.17, SNF1-RELATED PROTEIN KINASE 3.17 0.306 0.083
68 254059_at AT4G25200 ATHSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6, HSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6 0.305 -0.237
69 263259_at AT1G10560 ATPUB18, ARABIDOPSIS THALIANA PLANT U-BOX 18, PUB18, plant U-box 18 0.304 0.763
70 249728_at AT5G24390 [Ypt/Rab-GAP domain of gyp1p superfamily protein] 0.303 0.130
71 254605_at AT4G18950 [Integrin-linked protein kinase family] 0.302 -0.554
72 245253_at AT4G15440 CYP74B2, HPL1, hydroperoxide lyase 1 0.302 -0.243
73 248505_at AT5G50360 unknown 0.302 -0.477
74 247274_at AT5G64360 EIP9, EMF1-Interacting Protein 1 0.299 -0.585
75 266231_at AT2G02220 ATPSKR1, PHYTOSULFOKIN RECEPTOR 1, PSKR1, phytosulfokin receptor 1 0.297 -0.308
76 258907_at AT3G06370 ATNHX4, NHX4, sodium hydrogen exchanger 4 0.295 -0.716
77 250673_at AT5G07070 CIPK2, CBL-interacting protein kinase 2, SnRK3.2, SNF1-RELATED PROTEIN KINASE 3.2 0.292 -0.754
78 265886_at AT2G25620 AtDBP1, DNA-binding protein phosphatase 1, DBP1, DNA-binding protein phosphatase 1 0.289 0.159
79 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 0.289 0.205
80 267337_at AT2G39980 [HXXXD-type acyl-transferase family protein] 0.285 0.872
81 249197_at AT5G42380 CML37, calmodulin like 37 0.283 -0.167
82 251678_at AT3G56990 EDA7, embryo sac development arrest 7 0.282 -0.460
83 253779_at AT4G28490 HAE, HAESA, RLK5, RECEPTOR-LIKE PROTEIN KINASE 5 0.282 -0.476
84 249298_at AT5G41330 [BTB/POZ domain with WD40/YVTN repeat-like protein] 0.277 -0.642
85 245216_at AT4G16143 IMPA-2, importin alpha isoform 2 0.276 -0.075
86 260963_at AT1G44990 unknown 0.273 -0.228
87 261713_at AT1G32640 ATMYC2, JAI1, JASMONATE INSENSITIVE 1, JIN1, JASMONATE INSENSITIVE 1, MYC2, RD22BP1, ZBF1 0.272 -0.427
88 244994_at ATCG01010 NDHF -1.110 -1.232
89 245000_at ATCG00210 YCF6 -0.858 0.274
90 245008_at ATCG00360 YCF3 -0.818 0.031
91 244972_at ATCG00680 PSBB, photosystem II reaction center protein B -0.818 -0.729
92 259553_x_at AT1G21310 ATEXT3, extensin 3, EXT3, extensin 3, RSH, ROOT-SHOOT-HYPOCOTYL DEFECTIVE -0.734 -0.503
93 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 -0.715 -0.348
94 258663_at AT3G08670 unknown -0.711 -0.721
95 248197_at AT5G54190 PORA, protochlorophyllide oxidoreductase A -0.707 -0.479
96 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 -0.689 0.117
97 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 -0.681 0.817
98 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 -0.675 0.742
99 244999_at ATCG00190 RPOB, RNA polymerase subunit beta -0.611 -1.021
100 244977_at ATCG00730 PETD, photosynthetic electron transfer D -0.576 -0.714
101 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.544 -0.007
102 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 -0.533 1.227
103 245002_at ATCG00270 PSBD, photosystem II reaction center protein D -0.519 -0.436
104 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 -0.519 1.499
105 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] -0.497 -0.375
106 244934_at ATCG01080 NDHG -0.493 0.158
107 247074_at AT5G66590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.489 0.800
108 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 -0.486 1.012
109 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.483 0.886
110 256620_at AT3G24480 [Leucine-rich repeat (LRR) family protein] -0.479 0.681
111 250971_at AT5G02810 APRR7, PRR7, pseudo-response regulator 7 -0.477 0.199
112 245861_at AT5G28300 AtGT2L, GT2L, GT-2Like protein -0.466 0.840
113 252429_at AT3G47500 CDF3, cycling DOF factor 3 -0.455 0.990
114 262826_at AT1G13080 CYP71B2, cytochrome P450, family 71, subfamily B, polypeptide 2 -0.452 0.697
115 256527_at AT1G66100 [Plant thionin] -0.452 -0.863
116 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.447 0.568
117 259399_at AT1G17710 AtPEPC1, Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, PEPC1, phosphoethanolamine/phosphocholine phosphatase 1 -0.440 -0.317
118 266444_at AT2G43150 [Proline-rich extensin-like family protein] -0.429 -0.210
119 254635_at AT4G18670 [Leucine-rich repeat (LRR) family protein] -0.422 -0.119
120 249134_at AT5G43150 unknown -0.419 0.941
121 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 -0.408 0.246
122 246415_at AT5G17160 unknown -0.407 0.235
123 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.407 -0.165
124 244931_at ATMG00630 ORF110B -0.403 -0.410
125 249340_at AT5G41140 [Myosin heavy chain-related protein] -0.403 -0.115
126 265724_at AT2G32100 ATOFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, OFP16, ovate family protein 16 -0.402 1.457
127 257673_at AT3G20370 [TRAF-like family protein] -0.389 0.750
128 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 -0.389 0.621
129 248961_at AT5G45650 [subtilase family protein] -0.389 1.218
130 244903_at ATMG00660 ORF149 -0.383 -0.213
131 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.370 0.388
132 254770_at AT4G13340 LRX3, leucine-rich repeat/extensin 3 -0.363 0.608
133 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 -0.360 0.719
134 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.357 1.128
135 246536_at AT5G15920 EMB2782, EMBRYO DEFECTIVE 2782, SMC5, structural maintenance of chromosomes 5 -0.355 0.422
136 253372_at AT4G33220 ATPME44, A. THALIANA PECTIN METHYLESTERASE 44, PME44, pectin methylesterase 44 -0.350 1.411
137 247812_at AT5G58390 [Peroxidase superfamily protein] -0.347 -0.663
138 247189_at AT5G65390 AGP7, arabinogalactan protein 7 -0.342 0.005
139 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 -0.330 0.826
140 264211_at AT1G22770 FB, GI, GIGANTEA -0.329 -0.140
141 267639_at AT2G42200 AtSPL9, SPL9, squamosa promoter binding protein-like 9 -0.329 0.053
142 251646_at AT3G57780 unknown -0.320 -0.543
143 254543_at AT4G19810 ChiC, class V chitinase -0.319 0.412
144 263549_at AT2G21650 ATRL2, ARABIDOPSIS RAD-LIKE 2, MEE3, MATERNAL EFFECT EMBRYO ARREST 3, RSM1, RADIALIS-LIKE SANT/MYB 1 -0.314 0.213
145 265311_at AT2G20250 unknown -0.314 -0.785
146 249422_at AT5G39760 AtHB23, homeobox protein 23, HB23, homeobox protein 23, ZHD10, ZINC FINGER HOMEODOMAIN 10 -0.311 0.501
147 265398_at AT2G11000 ATMAK10, MAK10 homologue, MAK10, MAK10, MAK10 homologue -0.311 0.834
148 245968_at AT5G19810 [Proline-rich extensin-like family protein] -0.310 0.519
149 263829_at AT2G40435 unknown -0.302 0.621
150 262096_at AT1G56010 anac021, Arabidopsis NAC domain containing protein 21, ANAC022, Arabidopsis NAC domain containing protein 22, NAC1, NAC domain containing protein 1 -0.301 -0.410
151 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -0.301 0.926
152 250122_at AT5G16520 unknown -0.300 -0.349
153 255438_at AT4G03070 AOP, AOP1, AOP1.1 -0.295 1.169
154 266154_at AT2G12190 [Cytochrome P450 superfamily protein] -0.292 0.481
155 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase -0.289 0.672
156 265179_at AT1G23650 unknown -0.289 -0.700
157 266793_at AT2G03060 AGL30, AGAMOUS-like 30 -0.287 0.519
158 250857_at AT5G04790 unknown -0.285 0.702
159 264828_at AT1G03380 ATATG18G, homolog of yeast autophagy 18 (ATG18) G, ATG18G, homolog of yeast autophagy 18 (ATG18) G -0.284 -0.343
160 251113_at AT5G01370 ACI1, ALC-interacting protein 1, TRM29, TON1 Recruiting Motif 29 -0.283 -0.291
161 264587_at AT1G05200 ATGLR3.4, glutamate receptor 3.4, GLR3.4, glutamate receptor 3.4, GLUR3 -0.281 0.571
162 256622_at AT3G28920 AtHB34, homeobox protein 34, HB34, homeobox protein 34, ZHD9, ZINC FINGER HOMEODOMAIN 9 -0.280 0.947
163 258419_at AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] -0.279 0.401
164 254250_at AT4G23290 CRK21, cysteine-rich RLK (RECEPTOR-like protein kinase) 21 -0.279 0.993
165 248937_at AT5G45770 AtRLP55, receptor like protein 55, RLP55, receptor like protein 55 -0.279 -0.154
166 267260_at AT2G23130 AGP17, arabinogalactan protein 17, ATAGP17 -0.277 -0.318
167 245875_at AT1G26240 [Proline-rich extensin-like family protein] -0.276 0.057
168 263725_at AT2G13550 unknown -0.275 0.274
169 258856_at AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 -0.275 0.209
170 264043_at AT2G22490 ATCYCD2;1, CYCD2;1, Cyclin D2;1 -0.273 0.204
171 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.273 -0.076
172 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] -0.272 0.251
173 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 -0.271 -0.720