4.0:Information of module
scm
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0015988 energy coupled proton transmembrane tran... BP 8.354e-04
GO:0015991 ATP hydrolysis coupled proton transport BP 8.354e-04
GO:0009310 amine catabolic process BP 1.339e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0002252 immune effector process BP 4.866e-04
GO:0002679 respiratory burst involved in defense re... BP 4.457e-03
GO:0045730 respiratory burst BP 4.457e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
scm		 Log2 signal ratio
Leafminer damaged seedlings
1 264892_at AT1G23160 [Auxin-responsive GH3 family protein] 0.404 0.078
2 257466_at AT1G62840 unknown 0.401 0.680
3 245209_at AT5G12340 unknown 0.339 1.171
4 251200_at AT3G63010 ATGID1B, GID1B, GA INSENSITIVE DWARF1B 0.312 0.416
5 267367_at AT2G44210 unknown 0.284 -0.195
6 255022_at AT4G10350 ANAC070, NAC domain containing protein 70, BRN2, BEARSKIN 2, NAC070, NAC domain containing protein 70 0.249 0.011
7 267420_at AT2G35030 [Pentatricopeptide repeat (PPR) superfamily protein] 0.227 0.021
8 266539_at AT2G35160 SGD9, SET DOMAIN-CONTAINING PROTEIN 9, SUVH5, SU(VAR)3-9 homolog 5 0.220 -0.067
9 248425_at AT5G51690 ACS12, 1-amino-cyclopropane-1-carboxylate synthase 12 0.219 -0.112
10 254802_at AT4G13090 XTH2, xyloglucan endotransglucosylase/hydrolase 2 0.217 -0.023
11 257358_at AT2G40990 [DHHC-type zinc finger family protein] 0.206 0.014
12 255859_at AT5G34930 [arogenate dehydrogenase] 0.203 0.207
13 248394_at AT5G52070 [Agenet domain-containing protein] 0.203 0.012
14 254917_at AT4G11350 unknown 0.186 0.406
15 256063_at AT1G07130 ATSTN1, STN1 0.184 0.056
16 254924_at AT4G11330 ATMPK5, MAP kinase 5, MPK5, MAP kinase 5 0.181 0.337
17 260363_at AT1G70550 unknown 0.179 -0.371
18 266976_at AT2G39410 [alpha/beta-Hydrolases superfamily protein] 0.171 0.039
19 252484_at AT3G46690 [UDP-Glycosyltransferase superfamily protein] 0.160 0.285
20 249470_at AT5G39350 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.159 -0.044
21 246869_at AT5G26020 [similar to Glutamic acid-rich protein precursor (GB:P13816)] 0.155 -0.020
22 258627_at AT3G04460 APM4, ABERRANT PEROXISOME MORPHOLOGY 4, ATPEX12, PEROXIN-12, PEX12, peroxin-12 0.147 -0.091
23 245157_at AT2G33160 NMA, NIMNA (Sanskrit for 'sunken or low) 0.145 0.015
24 253020_at AT4G38020 [tRNA/rRNA methyltransferase (SpoU) family protein] 0.137 0.001
25 265688_at AT2G24300 [Calmodulin-binding protein] 0.132 -0.066
26 265986_at AT2G24230 [Leucine-rich repeat protein kinase family protein] 0.131 -0.183
27 247056_at AT5G66750 ATDDM1, CHA1, CHR01, CHROMATIN REMODELING 1, CHR1, chromatin remodeling 1, DDM1, DECREASED DNA METHYLATION 1, SOM1, SOMNIFEROUS 1, SOM4 0.126 -0.207
28 251693_at AT3G56550 [Pentatricopeptide repeat (PPR) superfamily protein] 0.123 -0.026
29 245509_at AT4G15730 [CW-type Zinc Finger] 0.122 -0.089
30 245926_at AT5G24740 SHBY, SHRUBBY 0.121 -0.065
31 251545_at AT3G58810 ATMTP3, ARABIDOPSIS METAL TOLERANCE PROTEIN 3, ATMTPA2, MTP3, METAL TOLERANCE PROTEIN 3, MTPA2, metal tolerance protein A2 -0.354 -0.013
32 250812_at AT5G04900 NOL, NYC1-like -0.299 -0.117
33 262578_at AT1G15300 CYTOSLEEPER, CYTOSLEEPER -0.284 0.072
34 245620_at AT4G14050 [Pentatricopeptide repeat (PPR) superfamily protein] -0.257 -0.040
35 264442_at AT1G27480 [alpha/beta-Hydrolases superfamily protein] -0.255 -0.379
36 266387_at AT2G32360 [Ubiquitin-like superfamily protein] -0.255 -0.031
37 256168_at AT1G51805 [Leucine-rich repeat protein kinase family protein] -0.254 0.030
38 263674_at AT2G04790 unknown -0.253 -0.631
39 266492_at AT2G07020 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.236 0.052
40 245933_at AT5G09320 VPS9B -0.216 -0.097
41 254948_at AT4G11000 [Ankyrin repeat family protein] -0.215 0.263
42 262907_at AT1G59720 CRR28, CHLORORESPIRATORY REDUCTION28 -0.214 -0.207
43 254406_at AT4G21360 [copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)] -0.213 0.047
44 262190_at AT1G78030 unknown -0.212 -0.002
45 255181_at AT4G08110 [CACTA-like transposase family (Ptta/En/Spm), has a 4.2e-66 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.211 -0.093
46 255173_at AT4G08020 [CACTA-like transposase family (En/Spm), has a 2.5e-93 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)] -0.210 -0.027
47 266901_at AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B -0.208 1.244
48 265086_at AT1G03770 ATRING1B, ARABIDOPSIS THALIANA RING 1B, RING1B, RING 1B -0.208 0.030
49 256083_at AT1G20735 [F-box and associated interaction domains-containing protein] -0.205 -0.010
50 247714_at AT5G59340 WOX2, WUSCHEL related homeobox 2 -0.201 -0.116
51 248969_at AT5G45310 unknown -0.196 0.028
52 251540_at AT3G58740 CSY1, citrate synthase 1 -0.192 0.035
53 262309_at AT1G70820 [phosphoglucomutase, putative / glucose phosphomutase, putative] -0.184 0.698
54 252809_at AT3G42430 unknown -0.183 -0.077
55 261445_at AT1G28380 NSL1, necrotic spotted lesions 1 -0.172 0.224
56 249386_at AT5G40060 [Disease resistance protein (NBS-LRR class) family] -0.167 -0.106
57 263354_at AT2G22060 unknown -0.163 -0.012
58 255352_at AT4G03860 [transposon protein -related, similar to athila retroelement] -0.161 -0.006
59 255574_at AT4G01420 CBL5, calcineurin B-like protein 5 -0.160 0.007