4.0:Information of module
cpctry
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010025 wax biosynthetic process BP 8.310e-05
GO:0010166 wax metabolic process BP 8.310e-05
GO:0042435 indole-containing compound biosynthetic ... BP 1.658e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010054 trichoblast differentiation BP 8.582e-22
GO:0010053 root epidermal cell differentiation BP 3.987e-21
GO:0090627 plant epidermal cell differentiation BP 9.722e-21
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cpctry		 Log2 signal ratio
bri1-116
1 248246_at AT5G53200 TRY, TRIPTYCHON 0.934 -0.003
2 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.741 0.053
3 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.683 -0.364
4 246487_at AT5G16030 unknown 0.666 0.194
5 248384_at AT5G51930 [Glucose-methanol-choline (GMC) oxidoreductase family protein] 0.583 0.089
6 261989_at AT1G33670 [Leucine-rich repeat (LRR) family protein] 0.575 -0.006
7 263754_at AT2G21510 [DNAJ heat shock N-terminal domain-containing protein] 0.526 0.032
8 256359_at AT1G66460 [Protein kinase superfamily protein] 0.518 -0.083
9 262376_at AT1G72970 EDA17, embryo sac development arrest 17, HTH, HOTHEAD 0.423 -0.103
10 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 0.419 0.021
11 252478_at AT3G46540 [ENTH/VHS family protein] 0.412 -0.072
12 253936_at AT4G26880 [Stigma-specific Stig1 family protein] 0.405 0.022
13 263841_at AT2G36870 AtXTH32, XTH32, xyloglucan endotransglucosylase/hydrolase 32 0.402 0.236
14 250135_at AT5G15360 unknown 0.393 -0.063
15 263374_at AT2G20560 [DNAJ heat shock family protein] 0.386 -0.121
16 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 0.377 -0.030
17 248394_at AT5G52070 [Agenet domain-containing protein] 0.348 -0.095
18 263194_at AT1G36060 [Integrase-type DNA-binding superfamily protein] 0.343 0.380
19 252663_at AT3G44070 [Glycosyl hydrolase family 35 protein] 0.339 0.139
20 249686_at AT5G36140 CYP716A2, cytochrome P450, family 716, subfamily A, polypeptide 2 0.330 -0.030
21 254754_at AT4G13210 [Pectin lyase-like superfamily protein] 0.320 -0.100
22 257450_at AT1G10530 unknown 0.319 0.053
23 252437_at AT3G47380 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.313 -0.048
24 254917_at AT4G11350 unknown 0.307 0.023
25 261327_at AT1G44830 [Integrase-type DNA-binding superfamily protein] 0.304 0.193
26 264436_at AT1G10370 ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, ERD9, EARLY-RESPONSIVE TO DEHYDRATION 9, GST30, GLUTATHIONE S-TRANSFERASE 30, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GSTU17, GLUTATHIONE S-TRANSFERASE U17 0.303 -0.176
27 258468_at AT3G06070 unknown 0.302 -0.265
28 267420_at AT2G35030 [Pentatricopeptide repeat (PPR) superfamily protein] 0.294 0.036
29 255963_at AT1G22310 ATMBD8, MBD8, methyl-CPG-binding domain 8 0.288 0.006
30 258857_at AT3G02110 scpl25, serine carboxypeptidase-like 25 0.286 -0.127
31 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.284 -0.177
32 261298_at AT1G48510 [Surfeit locus 1 cytochrome c oxidase biogenesis protein] 0.270 -0.009
33 257929_at AT3G16980 NRPB9A, NRPD9A, NRPE9A 0.265 0.019
34 264481_at AT1G77200 [Integrase-type DNA-binding superfamily protein] 0.264 -0.386
35 245965_at AT5G19730 [Pectin lyase-like superfamily protein] 0.264 0.277
36 266539_at AT2G35160 SGD9, SET DOMAIN-CONTAINING PROTEIN 9, SUVH5, SU(VAR)3-9 homolog 5 0.264 0.089
37 260522_x_at AT2G41730 unknown 0.260 -0.458
38 267300_at AT2G30140 UGT87A2, UDP-glucosyl transferase 87A2 0.243 -0.120
39 246409_at AT1G57700 [Protein kinase superfamily protein] 0.240 -0.042
40 259794_at AT1G64330 [myosin heavy chain-related] 0.239 -0.089
41 257117_at AT3G20160 [Terpenoid synthases superfamily protein] 0.235 0.030
42 266900_at AT2G34610 unknown 0.235 -0.013
43 267358_at AT2G39890 ATPROT1, PROLINE TRANSPORTER 1, PROT1, proline transporter 1 0.234 -0.049
44 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 0.232 -0.091
45 261363_at AT1G41830 SKS6, SKU5 SIMILAR 6, SKS6, SKU5-similar 6 0.232 -0.209
46 266282_at AT2G29220 LecRK-III.1, L-type lectin receptor kinase III.1 0.231 0.013
47 247129_at AT5G66150 [Glycosyl hydrolase family 38 protein] 0.227 0.060
48 254802_at AT4G13090 XTH2, xyloglucan endotransglucosylase/hydrolase 2 0.226 0.031
49 259592_at AT1G27950 LTPG1, glycosylphosphatidylinositol-anchored lipid protein transfer 1 0.223 -0.161
50 247673_at AT5G60230 ATSEN2, SPLICING ENDONUCLEASE 2, SEN2, splicing endonuclease 2 0.221 0.208
51 263010_at AT1G23330 [alpha/beta-Hydrolases superfamily protein] 0.221 -0.161
52 255818_at AT2G33570 GALS1, galactan synthase 1 0.221 -0.139
53 256721_at AT2G34150 ATRANGAP2, ATSCAR1, SCAR1, WAVE1, WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1 0.220 -0.009
54 258312_at AT3G16170 AAE13, acyl activating enzyme 13 0.219 -0.081
55 250823_at AT5G05180 unknown 0.214 -0.035
56 247409_at AT5G62980 FOLB2 0.213 0.144
57 260886_at AT1G29200 [O-fucosyltransferase family protein] 0.206 0.023
58 245513_at AT4G15780 ATVAMP724, vesicle-associated membrane protein 724, VAMP724, vesicle-associated membrane protein 724 0.205 0.103
59 249489_at AT5G39090 [HXXXD-type acyl-transferase family protein] 0.201 -0.035
60 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.199 -0.136
61 246122_at AT5G20380 PHT4;5, phosphate transporter 4;5 0.198 0.119
62 257922_at AT3G23150 ETR2, ethylene response 2 0.197 0.004
63 252175_at AT3G50700 AtIDD2, indeterminate(ID)-domain 2, IDD2, indeterminate(ID)-domain 2 0.195 -0.010
64 253662_at AT4G30080 ARF16, auxin response factor 16 0.194 -0.107
65 265075_at AT1G55450 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.191 -0.306
66 261813_at AT1G08280 [Glycosyltransferase family 29 (sialyltransferase) family protein] 0.191 -0.159
67 246652_at AT5G35190 EXT13, extensin 13 -1.418 -0.020
68 254044_at AT4G25820 ATXTH14, XTH14, xyloglucan endotransglucosylase/hydrolase 14, XTR9, xyloglucan endotransglycosylase 9 -1.383 -0.162
69 265102_at AT1G30870 [Peroxidase superfamily protein] -1.331 -0.061
70 251226_at AT3G62680 ATPRP3, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, PRP3, proline-rich protein 3 -1.306 0.021
71 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 -1.283 0.065
72 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] -1.244 0.032
73 250778_at AT5G05500 MOP10 -1.211 -0.008
74 259525_at AT1G12560 ATEXP7, ATEXPA7, expansin A7, ATHEXP ALPHA 1.26, EXP7, EXPA7, expansin A7 -1.114 0.082
75 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 -1.110 -0.039
76 258765_at AT3G10710 RHS12, root hair specific 12 -1.094 -0.022
77 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -1.090 -0.226
78 255516_at AT4G02270 RHS13, root hair specific 13 -1.070 -0.054
79 254836_at AT4G12330 CYP706A7, cytochrome P450, family 706, subfamily A, polypeptide 7 -1.056 -0.114
80 264029_at AT2G03720 MRH6, morphogenesis of root hair 6 -1.053 0.024
81 246991_at AT5G67400 RHS19, root hair specific 19 -1.023 -0.036
82 247895_at AT5G58010 LRL3, LJRHL1-like 3 -1.023 -0.043
83 249185_at AT5G43030 [Cysteine/Histidine-rich C1 domain family protein] -1.006 -0.242
84 249756_at AT5G24313 unknown -0.988 0.023
85 259964_at AT1G53680 ATGSTU28, glutathione S-transferase TAU 28, GSTU28, glutathione S-transferase TAU 28 -0.979 0.107
86 254313_at AT4G22460 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.966 -0.715
87 267409_at AT2G34910 unknown -0.934 0.114
88 249934_at AT5G22410 RHS18, root hair specific 18 -0.921 0.028
89 253244_at AT4G34580 AtSFH1, COW1, CAN OF WORMS1, SRH1, SHORT ROOT HAIR 1 -0.920 0.072
90 252238_at AT3G49960 [Peroxidase superfamily protein] -0.915 0.025
91 261550_at AT1G63450 RHS8, root hair specific 8, XUT1, XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1 -0.909 0.066
92 264347_at AT1G12040 LRX1, leucine-rich repeat/extensin 1 -0.886 0.043
93 261099_at AT1G62980 ATEXP18, ATEXPA18, expansin A18, ATHEXP ALPHA 1.25, EXP18, EXPANSIN 18, EXPA18, expansin A18 -0.865 -0.021
94 256283_at AT3G12540 unknown -0.865 0.058
95 248978_at AT5G45070 AtPP2-A8, phloem protein 2-A8, PP2-A8, phloem protein 2-A8 -0.857 -0.047
96 267582_at AT2G41970 [Protein kinase superfamily protein] -0.852 -0.009
97 255675_at AT4G00480 ATMYC1, myc1 -0.841 0.089
98 245967_at AT5G19800 [hydroxyproline-rich glycoprotein family protein] -0.825 0.200
99 255074_at AT4G09100 [RING/U-box superfamily protein] -0.825 -0.050
100 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] -0.823 0.143
101 258027_at AT3G19515 unknown -0.823 -0.090
102 249097_at AT5G43520 [Cysteine/Histidine-rich C1 domain family protein] -0.817 -0.332
103 260366_at AT1G70460 AtPERK13, proline-rich extensin-like receptor kinase 13, PERK13, proline-rich extensin-like receptor kinase 13, RHS10, root hair specific 10 -0.814 -0.134
104 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] -0.799 0.106
105 248652_at AT5G49270 COBL9, COBRA-LIKE 9, DER9, DEFORMED ROOT HAIRS 9, MRH4, MUTANT ROOT HAIR 4, SHV2, SHAVEN 2 -0.776 -0.045
106 253353_at AT4G33730 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.771 -0.012
107 265155_at AT1G30990 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.739 -0.104
108 248079_at AT5G55790 unknown -0.720 0.154
109 245966_at AT5G19790 RAP2.11, related to AP2 11 -0.716 0.002
110 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 -0.709 -0.063
111 263777_at AT2G46450 ATCNGC12, cyclic nucleotide-gated channel 12, CNGC12, cyclic nucleotide-gated channel 12 -0.694 0.093
112 264988_at AT1G27140 ATGSTU14, glutathione S-transferase tau 14, GST13, GLUTATHIONE S-TRANSFERASE 13, GSTU14, glutathione S-transferase tau 14 -0.691 0.041
113 252502_at AT3G46900 COPT2, copper transporter 2 -0.678 -0.017
114 249868_at AT5G23030 TET12, tetraspanin12 -0.676 0.021
115 266913_at AT2G45890 ATROPGEF4, RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4, GEF4, guanine exchange factor 4, RHS11, ROOT HAIR SPECIFIC 11, ROPGEF4, ROP (rho of plants) guanine nucleotide exchange factor 4 -0.675 -0.535
116 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.660 -0.013
117 252612_at AT3G45160 [Putative membrane lipoprotein] -0.655 0.306
118 263288_at AT2G36130 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] -0.653 0.148
119 245566_at AT4G14610 [pseudogene] -0.624 -0.019
120 251842_at AT3G54580 [Proline-rich extensin-like family protein] -0.616 0.045
121 259529_at AT1G12400 [Nucleotide excision repair, TFIIH, subunit TTDA] -0.611 0.003
122 254057_at AT4G25170 [Uncharacterised conserved protein (UCP012943)] -0.610 0.092
123 257418_at AT1G30850 RSH4, root hair specific 4 -0.594 0.044
124 247531_at AT5G61550 [U-box domain-containing protein kinase family protein] -0.579 0.068
125 251405_at AT3G60330 AHA7, H(+)-ATPase 7, HA7, H(+)-ATPase 7 -0.578 -0.012
126 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] -0.560 -0.171
127 247988_at AT5G56910 [Proteinase inhibitor I25, cystatin, conserved region] -0.525 0.074
128 259576_at AT1G35330 [RING/U-box superfamily protein] -0.519 -0.120
129 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.508 -0.081
130 251843_x_at AT3G54590 ATHRGP1, hydroxyproline-rich glycoprotein, HRGP1, hydroxyproline-rich glycoprotein -0.508 0.031
131 257432_at AT2G21850 [Cysteine/Histidine-rich C1 domain family protein] -0.481 -0.223