4.0:Information of module
NaCl Col
In comparison with root cells cortex 140mM NaCl 20 hours help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001101 response to acid chemical BP 1.355e-24
GO:0009719 response to endogenous stimulus BP 1.453e-22
GO:1901700 response to oxygen-containing compound BP 2.171e-22
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0071705 nitrogen compound transport BP 5.127e-07
GO:0006820 anion transport BP 1.568e-06
GO:0008202 steroid metabolic process BP 1.586e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
NaCl Col		 Log2 signal ratio
root cells cortex 140mM NaCl 20 hours
1 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 1.441 0.291
2 258325_at AT3G22830 AT-HSFA6B, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, HSFA6B, heat shock transcription factor A6B 1.371 -0.680
3 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 1.172 -0.222
4 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] 1.132 0.152
5 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 1.114 0.146
6 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 1.065 -0.026
7 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 0.993 0.303
8 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 0.980 0.050
9 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related 0.939 0.181
10 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] 0.939 -0.114
11 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] 0.915 0.385
12 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 0.873 0.129
13 265024_at AT1G24600 unknown 0.832 -0.044
14 248203_at AT5G54230 AtMYB49, myb domain protein 49, MYB49, myb domain protein 49 0.801 -0.054
15 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 0.797 -0.262
16 256285_at AT3G12510 [MADS-box family protein] 0.780 -0.157
17 263881_at AT2G21820 unknown 0.760 0.518
18 248209_at AT5G53990 [UDP-Glycosyltransferase superfamily protein] 0.733 0.358
19 252988_at AT4G38410 [Dehydrin family protein] 0.731 0.529
20 264217_at AT1G60190 AtPUB19, PUB19, plant U-box 19 0.727 -0.126
21 265983_at AT2G18550 ATHB21, homeobox protein 21, HB-2, homeobox-2, HB21, homeobox protein 21 0.726 0.008
22 266274_at AT2G29380 HAI3, highly ABA-induced PP2C gene 3 0.701 0.059
23 250158_at AT5G15190 unknown 0.684 0.058
24 252073_at AT3G51750 unknown 0.684 0.456
25 249771_at AT5G24080 [Protein kinase superfamily protein] 0.677 -0.147
26 257163_at AT3G24310 ATMYB71, MYB DOMAIN PROTEIN 71, MYB305, myb domain protein 305 0.667 -0.052
27 246582_at AT1G31750 [proline-rich family protein] 0.645 0.169
28 261077_at AT1G07430 AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, HAI2, highly ABA-induced PP2C gene 2, HON, HONSU (Korean for abnormal drowsiness) 0.642 -0.012
29 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.639 0.146
30 247957_at AT5G57050 ABI2, ABA INSENSITIVE 2, AtABI2 0.632 -0.014
31 251039_at AT5G02020 SIS, Salt Induced Serine rich 0.631 0.117
32 253936_at AT4G26880 [Stigma-specific Stig1 family protein] 0.620 0.192
33 251644_at AT3G57540 [Remorin family protein] 0.609 0.223
34 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 0.583 -0.116
35 267080_at AT2G41190 [Transmembrane amino acid transporter family protein] 0.582 0.292
36 245748_at AT1G51140 AKS1, ABA-responsive kinase substrate 1, FBH3, FLOWERING BHLH 3 0.581 -0.027
37 251132_at AT5G01200 [Duplicated homeodomain-like superfamily protein] 0.569 -0.168
38 262061_at AT1G80110 ATPP2-B11, phloem protein 2-B11, PP2-B11, phloem protein 2-B11 0.566 0.156
39 267058_at AT2G32510 MAPKKK17, mitogen-activated protein kinase kinase kinase 17 0.556 -0.174
40 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 0.550 0.348
41 260357_at AT1G69260 AFP1, ABI five binding protein 0.546 -0.123
42 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 0.544 0.084
43 253293_at AT4G33905 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.537 -0.182
44 267357_at AT2G40000 ATHSPRO2, ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, HSPRO2, ortholog of sugar beet HS1 PRO-1 2 0.534 -0.037
45 261648_at AT1G27730 STZ, salt tolerance zinc finger, ZAT10 0.531 0.070
46 248764_at AT5G47640 NF-YB2, nuclear factor Y, subunit B2 0.524 -0.278
47 251824_at AT3G55090 ABCG16, ATP-binding cassette G16 0.520 -0.209
48 250858_at AT5G04760 [Duplicated homeodomain-like superfamily protein] 0.508 -0.093
49 249494_at AT5G39050 PMAT1, phenolic glucoside malonyltransferase 1 0.506 -0.131
50 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE 0.506 0.162
51 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.502 -0.162
52 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.494 0.121
53 260243_at AT1G63720 unknown 0.492 0.115
54 246777_at AT5G27420 ATL31, Arabidopsis toxicos en levadura 31, CNI1, carbon/nitrogen insensitive 1 0.491 0.251
55 265204_at AT2G36650 unknown 0.486 0.060
56 257022_at AT3G19580 AZF2, zinc-finger protein 2, ZF2, zinc-finger protein 2 0.486 -0.034
57 245724_at AT1G73390 [Endosomal targeting BRO1-like domain-containing protein] 0.484 -0.146
58 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.472 0.160
59 254085_at AT4G24960 ATHVA22D, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22D, HVA22 homologue D 0.471 -0.089
60 247120_at AT5G65990 [Transmembrane amino acid transporter family protein] 0.468 0.005
61 262496_at AT1G21790 [TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein] 0.465 0.031
62 256114_at AT1G16850 unknown 0.454 -0.003
63 258878_at AT3G03170 unknown 0.449 -0.086
64 262363_at AT1G72850 [Disease resistance protein (TIR-NBS class)] 0.448 0.016
65 257536_at AT3G02800 AtPFA-DSP3, PFA-DSP3, plant and fungi atypical dual-specificity phosphatase 3 0.444 0.002
66 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.443 -0.057
67 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 -0.963 -0.562
68 266066_at AT2G18800 ATXTH21, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 21, XTH21, xyloglucan endotransglucosylase/hydrolase 21 -0.845 -0.854
69 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 -0.746 -0.429
70 251368_at AT3G61380 TRM14, TON1 Recruiting Motif 14 -0.732 -0.593
71 252511_at AT3G46280 [protein kinase-related] -0.731 -0.321
72 255608_at AT4G01140 unknown -0.680 -0.887
73 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 -0.673 -0.647
74 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.671 0.130
75 261474_at AT1G14540 PER4, peroxidase 4 -0.653 0.111
76 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] -0.640 -0.555
77 256774_at AT3G13760 [Cysteine/Histidine-rich C1 domain family protein] -0.593 -0.791
78 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.580 0.009
79 258528_at AT3G06770 [Pectin lyase-like superfamily protein] -0.551 -0.303
80 264947_at AT1G77020 [DNAJ heat shock N-terminal domain-containing protein] -0.551 -0.384
81 260806_at AT1G78260 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.542 -0.380
82 248443_at AT5G51310 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.529 -0.221
83 267240_at AT2G02680 [Cysteine/Histidine-rich C1 domain family protein] -0.458 -0.618
84 246997_at AT5G67390 unknown -0.437 -0.340
85 247696_at AT5G59780 ATMYB59, MYB DOMAIN PROTEIN 59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MYB59, myb domain protein 59 -0.413 -0.246
86 251688_at AT3G56480 [myosin heavy chain-related] -0.413 -0.430
87 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 -0.410 -0.177
88 267384_at AT2G44370 [Cysteine/Histidine-rich C1 domain family protein] -0.406 0.126
89 252582_at AT3G45530 [Cysteine/Histidine-rich C1 domain family protein] -0.405 -0.559
90 248252_at AT5G53250 AGP22, arabinogalactan protein 22, ATAGP22, ARABINOGALACTAN PROTEIN 22 -0.369 -0.312
91 254487_at AT4G20780 CML42, calmodulin like 42 -0.368 0.011
92 245574_at AT4G14750 IQD19, IQ-domain 19 -0.362 -0.313
93 259664_at AT1G55330 AGP21, arabinogalactan protein 21, ATAGP21, ARABINOGALACTAN PROTEIN 21 -0.362 -0.141
94 261768_at AT1G15550 ATGA3OX1, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, GA3OX1, gibberellin 3-oxidase 1, GA4, GA REQUIRING 4 -0.350 -0.082
95 249435_at AT5G39970 [catalytics] -0.348 -0.246
96 247189_at AT5G65390 AGP7, arabinogalactan protein 7 -0.338 -0.193
97 262793_at AT1G13110 CYP71B7, cytochrome P450, family 71 subfamily B, polypeptide 7 -0.330 -0.459
98 262772_at AT1G13210 ACA.l, autoinhibited Ca2+/ATPase II -0.330 -0.029
99 261825_at AT1G11545 XTH8, xyloglucan endotransglucosylase/hydrolase 8 -0.316 -0.268
100 259888_at AT1G76350 NLP5, NIN-like protein 5 -0.314 -0.067
101 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 -0.313 -0.282
102 252084_at AT3G51970 ASAT1, acyl-CoA sterol acyl transferase 1, ATASAT1, ATSAT1, ARABIDOPSIS THALIANA STEROL O-ACYLTRANSFERASE 1 -0.310 -0.125
103 246898_at AT5G25580 unknown -0.305 0.046
104 254344_at AT4G22110 [GroES-like zinc-binding dehydrogenase family protein] -0.302 -0.548
105 260926_at AT1G21360 GLTP2, glycolipid transfer protein 2 -0.295 -0.095
106 251857_at AT3G54770 ARP1, ABA-regulated RNA-binding protein 1 -0.292 -0.225
107 249166_at AT5G42840 [Cysteine/Histidine-rich C1 domain family protein] -0.290 -0.550
108 246797_at AT5G26790 unknown -0.285 -0.137
109 264481_at AT1G77200 [Integrase-type DNA-binding superfamily protein] -0.284 -0.085
110 250695_at AT5G06740 LecRK-S.5, L-type lectin receptor kinase S.5 -0.282 -0.022
111 251944_at AT3G53510 ABCG20, ATP-binding cassette G20 -0.282 -0.069
112 249768_at AT5G24100 [Leucine-rich repeat protein kinase family protein] -0.280 -0.693
113 254193_at AT4G23870 unknown -0.276 -0.366
114 265335_at AT2G18245 [alpha/beta-Hydrolases superfamily protein] -0.270 0.015
115 261772_at AT1G76240 unknown -0.269 -0.174
116 260432_at AT1G68150 ATWRKY9, WRKY9, WRKY DNA-binding protein 9 -0.267 -0.180
117 250823_at AT5G05180 unknown -0.262 -0.239
118 247483_at AT5G62420 [NAD(P)-linked oxidoreductase superfamily protein] -0.256 -0.019
119 251048_at AT5G02410 ALG10, homolog of yeast ALG10 -0.255 -0.243
120 259919_at AT1G72560 PSD, PAUSED -0.255 -0.021
121 248179_at AT5G54380 THE1, THESEUS1 -0.253 -0.310
122 259841_at AT1G52200 [PLAC8 family protein] -0.252 0.053
123 254060_at AT4G25350 SHB1, SHORT HYPOCOTYL UNDER BLUE1 -0.248 -0.126
124 246315_at AT3G56870 unknown -0.247 0.122
125 256633_at AT3G28340 GATL10, galacturonosyltransferase-like 10, GolS8, galactinol synthase 8 -0.247 -0.080
126 262170_at AT1G74940 unknown -0.247 -0.418
127 249011_at AT5G44670 GALS2, galactan synthase 2 -0.246 -0.492
128 256754_at AT3G25690 AtCHUP1, Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, CHUP1, CHLOROPLAST UNUSUAL POSITIONING 1 -0.245 0.112
129 264770_at AT1G23030 [ARM repeat superfamily protein] -0.245 -0.327
130 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 -0.243 -0.140
131 258702_at AT3G09730 unknown -0.237 0.057