4.0:Information of module
Glyphosate EC50
In comparison with seedlings by volatiles from leafminer damaged Lima bean 48h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009165 nucleotide biosynthetic process BP 1.873e-10
GO:1901293 nucleoside phosphate biosynthetic proces... BP 1.873e-10
GO:0044281 small molecule metabolic process BP 4.470e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0046777 protein autophosphorylation BP 2.559e-04
GO:0044272 sulfur compound biosynthetic process BP 8.731e-04
GO:0006766 vitamin metabolic process BP 1.923e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Glyphosate EC50		 Log2 signal ratio
seedlings by volatiles from leafminer damaged Lima bean 48h
1 262679_at AT1G75830 LCR67, low-molecular-weight cysteine-rich 67, PDF1.1, PLANT DEFENSIN 1.1 0.705 0.031
2 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 0.386 0.110
3 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 0.371 0.547
4 254630_at AT4G18360 GOX3, glycolate oxidase 3 0.258 0.408
5 257644_at AT3G25780 AOC3, allene oxide cyclase 3 0.256 0.125
6 259120_at AT3G02240 GLV4, GOLVEN 4, RGF7, root meristem growth factor 7 0.236 0.035
7 266368_at AT2G41380 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.231 0.444
8 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] 0.228 0.572
9 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.216 0.115
10 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.209 0.372
11 256924_at AT3G29590 AT5MAT 0.202 0.252
12 246461_at AT5G16930 [AAA-type ATPase family protein] 0.202 0.149
13 263039_at AT1G23280 [MAK16 protein-related] 0.196 0.076
14 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.190 0.170
15 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 0.174 0.722
16 250252_at AT5G13750 ZIFL1, zinc induced facilitator-like 1 0.170 0.201
17 247215_at AT5G64905 PROPEP3, elicitor peptide 3 precursor 0.166 -0.014
18 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 0.162 0.329
19 266668_at AT2G29760 OTP81, ORGANELLE TRANSCRIPT PROCESSING 81 0.159 0.057
20 252684_at AT3G44400 [Disease resistance protein (TIR-NBS-LRR class) family] 0.157 -0.056
21 258396_at AT3G15460 [Ribosomal RNA processing Brix domain protein] 0.153 0.143
22 249481_at AT5G38900 [Thioredoxin superfamily protein] 0.153 0.046
23 265188_at AT1G23800 ALDH2B, aldehyde dehydrogenase 2B, ALDH2B7, aldehyde dehydrogenase 2B7 0.148 0.123
24 254455_at AT4G21140 unknown 0.147 0.078
25 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 0.139 0.384
26 266139_at AT2G28085 SAUR42, SMALL AUXIN UPREGULATED RNA 42 0.139 0.341
27 258202_at AT3G13940 [DNA binding] 0.139 0.087
28 251538_at AT3G58660 [Ribosomal protein L1p/L10e family] 0.134 0.091
29 259403_at AT1G17745 PGDH, 3-phosphoglycerate dehydrogenase, PGDH2, phosphoglycerate dehydrogenase 2 0.133 0.236
30 250309_at AT5G12220 [las1-like family protein] 0.131 0.027
31 265032_at AT1G61580 ARP2, ARABIDOPSIS RIBOSOMAL PROTEIN 2, RPL3B, R-protein L3 B 0.130 0.050
32 260415_at AT1G69790 [Protein kinase superfamily protein] 0.130 0.020
33 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] -0.285 -0.205
34 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.244 -0.167
35 248073_at AT5G55720 [Pectin lyase-like superfamily protein] -0.214 0.064
36 246195_at AT4G36410 UBC17, ubiquitin-conjugating enzyme 17 -0.204 -0.050
37 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 -0.202 -0.089
38 251050_at AT5G02440 unknown -0.177 -0.073
39 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI -0.177 0.059
40 254954_at AT4G10910 unknown -0.175 -0.404
41 262010_at AT1G35612 [expressed protein] -0.169 -0.201
42 255511_at AT4G02075 PIT1, pitchoun 1 -0.167 -0.206
43 251976_at AT3G53240 AtRLP45, receptor like protein 45, RLP45, receptor like protein 45 -0.164 -0.103
44 262826_at AT1G13080 CYP71B2, cytochrome P450, family 71, subfamily B, polypeptide 2 -0.150 -0.173
45 260515_at AT1G51460 ABCG13, ATP-binding cassette G13 -0.148 0.138
46 251178_at AT3G63440 ATCKX6, CYTOKININ OXIDASE 6, ATCKX7, CKX6, cytokinin oxidase/dehydrogenase 6 -0.145 -0.016
47 253573_at AT4G31020 [alpha/beta-Hydrolases superfamily protein] -0.145 0.014
48 260603_at AT1G55960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.143 -0.113
49 256958_at AT3G13430 [RING/U-box superfamily protein] -0.143 -0.010
50 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 -0.142 -0.271
51 262582_at AT1G15410 [aspartate-glutamate racemase family] -0.139 0.075
52 246540_at AT5G15600 SP1L4, SPIRAL1-like4 -0.139 -0.053
53 257221_at AT3G27920 ATGL1, ATMYB0, myb domain protein 0, GL1, GLABRA 1, MYB0, myb domain protein 0 -0.137 -0.103
54 248911_at AT5G45830 ATDOG1, DOG1, DELAY OF GERMINATION 1, GAAS5, germination ability after storage 5, GSQ5, GLUCOSE SENSING QTL 5 -0.130 -0.092
55 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.129 0.059
56 260498_at AT2G41710 [Integrase-type DNA-binding superfamily protein] -0.127 -0.080
57 259174_at AT3G03690 UNE7, unfertilized embryo sac 7 -0.125 0.033
58 251592_at AT3G57670 NTT, NO TRANSMITTING TRACT, WIP2, WIP domain protein 2 -0.124 -0.024
59 260759_at AT1G49180 [protein kinase family protein] -0.123 -0.043
60 248584_at AT5G49960 unknown -0.123 -0.083
61 259540_at AT1G20640 NLP4, NIN-like protein 4 -0.123 -0.032
62 256640_at AT3G32260 [Nucleic acid-binding proteins superfamily] -0.123 0.032
63 265939_at AT2G19650 [Cysteine/Histidine-rich C1 domain family protein] -0.123 -0.051