4.0:Information of module
cop1 Seedling BL+ABA
In comparison with Chemically help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044281 small molecule metabolic process BP 5.373e-12
GO:0044711 single-organism biosynthetic process BP 8.370e-10
GO:0043436 oxoacid metabolic process BP 1.130e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 9.354e-08
GO:0009725 response to hormone BP 1.648e-07
GO:0009719 response to endogenous stimulus BP 6.230e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cop1 Seedling BL+ABA		 Log2 signal ratio
Chemically
1 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 0.887 0.009
2 256319_at AT1G35910 TPPD, trehalose-6-phosphate phosphatase D 0.664 -0.007
3 266292_at AT2G29350 SAG13, senescence-associated gene 13 0.612 -0.168
4 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.588 -0.060
5 249191_at AT5G42760 [Leucine carboxyl methyltransferase] 0.565 -0.013
6 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 0.558 0.171
7 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.465 0.126
8 254189_at AT4G24000 ATCSLG2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, CSLG2, cellulose synthase like G2 0.441 -0.015
9 257456_at AT2G18120 SRS4, SHI-related sequence 4 0.432 0.015
10 265634_at AT2G25530 [AFG1-like ATPase family protein] 0.418 0.007
11 249715_at AT5G35760 [Beta-galactosidase related protein] 0.405 0.006
12 249747_at AT5G24600 unknown 0.396 0.042
13 245982_at AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 0.380 0.154
14 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 0.376 0.083
15 254998_at AT4G09760 [Protein kinase superfamily protein] 0.375 -0.047
16 265197_at AT2G36750 UGT73C1, UDP-glucosyl transferase 73C1 0.374 0.152
17 256927_at AT3G22550 unknown 0.353 0.016
18 249622_at AT5G37550 unknown 0.343 -0.002
19 267646_at AT2G32830 PHT1;5, phosphate transporter 1;5, PHT5, PHOSPHATE TRANSPORTER 5 0.335 0.008
20 258596_at AT3G04510 LSH2, LIGHT SENSITIVE HYPOCOTYLS 2 0.333 0.038
21 246966_at AT5G24850 CRY3, cryptochrome 3 0.331 -0.050
22 250049_at AT5G17780 [alpha/beta-Hydrolases superfamily protein] 0.326 0.027
23 267070_at AT2G41000 [Chaperone DnaJ-domain superfamily protein] 0.316 0.047
24 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.292 0.008
25 263402_at AT2G04050 [MATE efflux family protein] 0.292 0.036
26 256386_at AT1G66540 [Cytochrome P450 superfamily protein] 0.290 -0.036
27 266337_at AT2G32390 ATGLR3.5, glutamate receptor 3.5, GLR3.5, glutamate receptor 3.5, GLR6 0.290 0.029
28 246682_at AT5G33290 XGD1, xylogalacturonan deficient 1 0.280 0.089
29 259380_at AT3G16340 ABCG29, ATP-binding cassette G29, AtABCG29, ATPDR1, PLEIOTROPIC DRUG RESISTANCE 1, PDR1, pleiotropic drug resistance 1 0.278 0.018
30 249774_at AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 0.276 -0.052
31 262634_at AT1G06690 [NAD(P)-linked oxidoreductase superfamily protein] 0.272 -0.002
32 247250_at AT5G64630 FAS2, FASCIATA 2, MUB3.9, NFB01, NFB1 0.265 0.071
33 258646_at AT3G08040 ATFRD3, FRD3, FERRIC REDUCTASE DEFECTIVE 3, MAN1, MANGANESE ACCUMULATOR 1 0.259 -0.000
34 251336_at AT3G61190 BAP1, BON association protein 1 0.257 -0.176
35 261335_at AT1G44800 SIAR1, Siliques Are Red 1, UMAMIT18, Usually multiple acids move in and out Transporters 18 0.256 0.016
36 249811_at AT5G23760 [Copper transport protein family] 0.253 -0.049
37 257466_at AT1G62840 unknown 0.246 0.019
38 260039_at AT1G68795 CLE12, CLAVATA3/ESR-RELATED 12 0.240 -0.038
39 251020_at AT5G02270 ABCI20, ATP-binding cassette I20, ATNAP9, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, NAP9, non-intrinsic ABC protein 9 0.233 -0.034
40 266015_at AT2G24190 SDR2, short-chain dehydrogenase/reductase 2 0.230 0.008
41 248070_at AT5G55660 [DEK domain-containing chromatin associated protein] 0.230 0.072
42 257666_at AT3G20270 [lipid-binding serum glycoprotein family protein] 0.224 0.065
43 264186_at AT1G54570 PES1, phytyl ester synthase 1 0.217 0.048
44 258738_at AT3G05750 TRM6, TON1 Recruiting Motif 6 0.214 0.043
45 248132_at AT5G54840 ATSGP1, SGP1 0.212 0.046
46 256714_at AT2G34080 [Cysteine proteinases superfamily protein] 0.207 0.117
47 251672_at AT3G57230 AGL16, AGAMOUS-like 16 0.202 -0.068
48 261551_at AT1G63440 HMA5, heavy metal atpase 5 0.197 0.079
49 253977_at AT4G26630 [DEK domain-containing chromatin associated protein] 0.197 0.050
50 248239_at AT5G53920 [ribosomal protein L11 methyltransferase-related] 0.194 0.074
51 265597_at AT2G20142 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.191 0.169
52 254120_at AT4G24570 DIC2, dicarboxylate carrier 2 0.189 -0.008
53 248049_at AT5G56090 COX15, cytochrome c oxidase 15 0.187 -0.026
54 265959_at AT2G37240 [Thioredoxin superfamily protein] 0.186 0.045
55 247060_at AT5G66760 SDH1-1, succinate dehydrogenase 1-1 0.186 0.028
56 250084_at AT5G17240 SDG40, SET domain group 40 0.184 -0.026
57 260221_at AT1G74670 GASA6, GA-stimulated Arabidopsis 6 -1.386 0.055
58 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] -0.986 0.050
59 247474_at AT5G62280 unknown -0.908 0.157
60 249053_at AT5G44440 [FAD-binding Berberine family protein] -0.796 -0.280
61 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.746 -0.171
62 263098_at AT2G16005 [MD-2-related lipid recognition domain-containing protein] -0.721 -0.403
63 263443_at AT2G28630 KCS12, 3-ketoacyl-CoA synthase 12 -0.697 -0.026
64 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.686 0.244
65 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.652 0.284
66 264016_at AT2G21220 SAUR12, SMALL AUXIN UPREGULATED RNA 12 -0.626 -0.068
67 259996_at AT1G67910 unknown -0.545 0.019
68 261046_at AT1G01390 [UDP-Glycosyltransferase superfamily protein] -0.535 -0.009
69 254193_at AT4G23870 unknown -0.527 -0.099
70 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 -0.525 -0.087
71 256743_at AT3G29370 P1R3, P1R3 -0.495 0.086
72 261395_at AT1G79700 WRI4, WRINKLED 4 -0.479 -0.042
73 246004_at AT5G20630 ATGER3, ARABIDOPSIS THALIANA GERMIN 3, GER3, germin 3, GLP3, GERMIN-LIKE PROTEIN 3, GLP3A, GLP3B -0.478 -0.011
74 256914_at AT3G23880 [F-box and associated interaction domains-containing protein] -0.454 0.004
75 245336_at AT4G16515 CLEL 6, CLE-like 6, GLV1, GOLVEN 1, RGF6, root meristem growth factor 6 -0.443 0.111
76 251039_at AT5G02020 SIS, Salt Induced Serine rich -0.420 -0.034
77 250437_at AT5G10430 AGP4, arabinogalactan protein 4, ATAGP4 -0.403 -0.073
78 255517_at AT4G02290 AtGH9B13, glycosyl hydrolase 9B13, GH9B13, glycosyl hydrolase 9B13 -0.392 0.149
79 249202_at AT5G42580 CYP705A12, cytochrome P450, family 705, subfamily A, polypeptide 12 -0.379 -0.046
80 264590_at AT2G17710 unknown -0.363 -0.084
81 261663_at AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 -0.360 -0.063
82 263765_at AT2G21540 ATSFH3, SEC14-LIKE 3, SFH3, SEC14-like 3 -0.351 -0.110
83 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 -0.345 -0.221
84 256452_at AT1G75240 AtHB33, homeobox protein 33, HB33, homeobox protein 33, ZHD5, zinc-finger homeodomain 5 -0.344 0.015
85 253278_at AT4G34220 [Leucine-rich repeat protein kinase family protein] -0.335 -0.049
86 267238_at AT2G44130 KMD3, KISS ME DEADLY 3 -0.327 0.113
87 245141_at AT2G45400 BEN1, BRI1-5 ENHANCED 1 -0.326 0.053
88 261717_at AT1G18400 BEE1, BR enhanced expression 1 -0.326 0.063
89 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor -0.322 -0.007
90 263073_at AT2G17500 [Auxin efflux carrier family protein] -0.307 0.026
91 250165_at AT5G15290 CASP5, Casparian strip membrane domain protein 5 -0.301 -0.185
92 245574_at AT4G14750 IQD19, IQ-domain 19 -0.300 -0.056
93 250509_at AT5G09970 CYP78A7, cytochrome P450, family 78, subfamily A, polypeptide 7 -0.298 0.119
94 251746_at AT3G56060 [Glucose-methanol-choline (GMC) oxidoreductase family protein] -0.293 -0.065
95 266941_at AT2G18980 [Peroxidase superfamily protein] -0.292 0.317
96 266300_at AT2G01420 ATPIN4, ARABIDOPSIS PIN-FORMED 4, PIN4, PIN-FORMED 4 -0.289 -0.010
97 262656_at AT1G14200 [RING/U-box superfamily protein] -0.281 0.013
98 253218_at AT4G34980 SLP2, subtilisin-like serine protease 2 -0.280 -0.013
99 263218_at AT1G30570 HERK2, hercules receptor kinase 2 -0.273 -0.029
100 259388_at AT1G13420 ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ST4B, sulfotransferase 4B -0.271 -0.186
101 254909_at AT4G11210 [Disease resistance-responsive (dirigent-like protein) family protein] -0.270 -0.093
102 261949_at AT1G64670 BDG1, BODYGUARD1, CED1, 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1 -0.269 -0.005
103 246565_at AT5G15530 BCCP2, biotin carboxyl carrier protein 2, CAC1-B -0.256 -0.037
104 255774_at AT1G18620 TRM3, TON1 Recruiting Motif 3 -0.250 0.023
105 254878_at AT4G11660 AT-HSFB2B, HSF7, HSFB2B, HEAT SHOCK TRANSCRIPTION FACTOR B2B -0.250 -0.019
106 248177_at AT5G54630 [zinc finger protein-related] -0.243 0.003
107 255652_at AT4G00950 MEE47, maternal effect embryo arrest 47 -0.239 -0.071
108 246483_at AT5G16000 AtNIK1, NIK1, NSP-interacting kinase 1 -0.235 -0.007
109 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 -0.227 0.159
110 245947_at AT5G19530 ACL5, ACAULIS 5 -0.225 0.061
111 260668_at AT1G19530 unknown -0.216 -0.109