4.0:Information of module
cop1 Seedling BL
In comparison with tetraploid help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006952 defense response BP 2.303e-08
GO:0043207 response to external biotic stimulus BP 2.390e-07
GO:0051707 response to other organism BP 2.390e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048509 regulation of meristem development BP 1.815e-16
GO:0010075 regulation of meristem growth BP 4.381e-16
GO:0035266 meristem growth BP 2.520e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cop1 Seedling BL		 Log2 signal ratio
tetraploid
1 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 1.177 -0.100
2 254189_at AT4G24000 ATCSLG2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, CSLG2, cellulose synthase like G2 1.086 -0.129
3 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 1.024 -0.038
4 245799_at AT1G45616 AtRLP6, receptor like protein 6, RLP6, receptor like protein 6 1.006 -0.058
5 264514_at AT1G09500 [NAD(P)-binding Rossmann-fold superfamily protein] 0.994 -0.005
6 266292_at AT2G29350 SAG13, senescence-associated gene 13 0.920 -0.312
7 264415_at AT1G43160 RAP2.6, related to AP2 6 0.920 0.102
8 248545_at AT5G50260 CEP1, cysteine endopeptidase 1 0.907 -0.067
9 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.896 -0.003
10 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.820 -0.166
11 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.793 -0.189
12 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.762 0.185
13 267548_at AT2G32660 AtRLP22, receptor like protein 22, RLP22, receptor like protein 22 0.737 0.049
14 252320_at AT3G48580 XTH11, xyloglucan endotransglucosylase/hydrolase 11 0.728 -0.120
15 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.723 -0.153
16 246072_at AT5G20240 PI, PISTILLATA 0.705 0.038
17 253485_at AT4G31800 ATWRKY18, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY18, WRKY DNA-binding protein 18 0.705 -0.056
18 255795_at AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 0.688 0.084
19 258327_at AT3G22640 PAP85 0.686 0.043
20 248611_at AT5G49520 ATWRKY48, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY48, WRKY DNA-binding protein 48 0.673 -0.042
21 249850_at AT5G23240 DJC76, DNA J protein C76 0.649 0.067
22 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 0.647 0.073
23 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.641 0.057
24 266901_at AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B 0.639 0.083
25 260438_at AT1G68290 ENDO2, endonuclease 2 0.637 -0.125
26 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 0.623 -0.102
27 259150_at AT3G10320 [Glycosyltransferase family 61 protein] 0.619 -0.002
28 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.615 -0.023
29 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.613 -0.212
30 246949_at AT5G25140 CYP71B13, cytochrome P450, family 71, subfamily B, polypeptide 13 0.610 -0.052
31 266357_at AT2G32290 BAM6, beta-amylase 6, BMY5, BETA-AMYLASE 5 0.607 -0.125
32 252136_at AT3G50770 CML41, calmodulin-like 41 0.604 -0.270
33 253999_at AT4G26200 ACCS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ACS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ATACS7 0.597 0.026
34 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.592 -0.170
35 250875_at AT5G04020 [calmodulin binding] 0.579 -0.069
36 265853_at AT2G42360 [RING/U-box superfamily protein] 0.576 -0.028
37 255306_at AT4G04740 ATCPK23, CPK23, calcium-dependent protein kinase 23 0.575 0.067
38 264685_at AT1G65610 ATGH9A2, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A2, KOR2, KORRIGAN 2 0.575 -0.006
39 265660_at AT2G25470 AtRLP21, receptor like protein 21, RLP21, receptor like protein 21 0.560 -0.018
40 260031_at AT1G68790 CRWN3, CROWDED NUCLEI 3, LINC3, LITTLE NUCLEI3 0.558 -0.043
41 249622_at AT5G37550 unknown 0.548 -0.007
42 247013_at AT5G67480 ATBT4, BT4, BTB and TAZ domain protein 4 0.542 -0.030
43 253101_at AT4G37430 CYP81F1, CYTOCHROME P450 MONOOXYGENASE 81F1, CYP91A2, cytochrome P450, family 91, subfamily A, polypeptide 2 0.541 -0.072
44 265197_at AT2G36750 UGT73C1, UDP-glucosyl transferase 73C1 0.537 -0.054
45 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] 0.534 0.034
46 256296_at AT1G69480 [EXS (ERD1/XPR1/SYG1) family protein] 0.529 0.005
47 251479_at AT3G59700 ATHLECRK, lectin-receptor kinase, HLECRK, lectin-receptor kinase, LecRK-V.5, L-type lectin receptor kinase V.5, LecRK-V.5, LEGUME-LIKE LECTIN RECEPTOR KINASE-V.5, LECRK1, LECTIN-RECEPTOR KINASE 1 0.525 -0.126
48 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.522 -0.024
49 250660_at AT5G07060 MAC5C, MOS4-associated complex subunit 5C 0.517 -0.022
50 250666_at AT5G07100 WRKY26, WRKY DNA-binding protein 26 0.511 -0.055
51 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 0.509 -0.177
52 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.506 -0.052
53 257592_at AT3G24982 ATRLP40, receptor like protein 40, RLP40, receptor like protein 40 0.503 -0.048
54 267140_at AT2G38250 [Homeodomain-like superfamily protein] 0.500 0.001
55 262640_at AT1G62760 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.494 -0.010
56 264301_at AT1G78780 [pathogenesis-related family protein] 0.490 -0.059
57 248228_at AT5G53800 unknown 0.484 -0.025
58 254543_at AT4G19810 ChiC, class V chitinase 0.482 0.024
59 252170_at AT3G50480 HR4, homolog of RPW8 4 0.476 -0.040
60 251191_at AT3G62590 [alpha/beta-Hydrolases superfamily protein] 0.475 -0.039
61 248896_at AT5G46350 ATWRKY8, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY8, WRKY DNA-binding protein 8 0.471 -0.024
62 263569_at AT2G27170 SMC3, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, TTN7, TITAN7 0.471 0.092
63 246943_at AT5G25440 [Protein kinase superfamily protein] 0.470 0.053
64 265678_at AT2G31970 ATRAD50, RAD50 0.467 -0.072
65 256659_at AT3G12020 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.464 -0.103
66 259913_at AT1G72660 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.457 -0.029
67 255148_at AT4G08470 MAPKKK10, MEKK3, MAPK/ERK kinase kinase 3 0.456 -0.108
68 252611_at AT3G45130 LAS1, lanosterol synthase 1 0.452 -0.007
69 256544_at AT1G42560 ATMLO9, ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 9, MLO9, MILDEW RESISTANCE LOCUS O 9 0.445 -0.099
70 249409_at AT5G40340 [Tudor/PWWP/MBT superfamily protein] 0.444 -0.014
71 256096_at AT1G13650 unknown 0.441 -0.147
72 260296_at AT1G63750 [Disease resistance protein (TIR-NBS-LRR class) family] 0.435 0.035
73 252303_at AT3G49210 [O-acyltransferase (WSD1-like) family protein] 0.430 -0.016
74 258507_at AT3G06500 A/N-InvC, alkaline/neutral invertase C 0.428 0.089
75 248344_at AT5G52280 [Myosin heavy chain-related protein] 0.426 -0.002
76 255345_at AT4G04460 [Saposin-like aspartyl protease family protein] 0.423 0.008
77 249071_at AT5G44050 [MATE efflux family protein] 0.422 -0.128
78 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 0.420 -0.080
79 263380_at AT2G40200 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.414 0.004
80 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.410 -0.045
81 256425_at AT1G33560 ADR1, ACTIVATED DISEASE RESISTANCE 1 0.409 -0.050
82 245702_at AT5G04220 ATSYTC, NTMC2T1.3, NTMC2TYPE1.3, SYT3, synaptotagmin 3, SYTC 0.409 -0.013
83 246984_at AT5G67310 CYP81G1, cytochrome P450, family 81, subfamily G, polypeptide 1 0.406 -0.016
84 257073_at AT3G19650 [cyclin-related] 0.405 0.082
85 251432_at AT3G59820 AtLETM1, LETM1, leucine zipper-EF-hand-containing transmembrane protein 1 0.405 0.014
86 265196_at AT2G36740 ATSWC2, SWC2 0.400 0.003
87 258833_at AT3G07274 0.399 0.019
88 250793_at AT5G05600 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.397 -0.043
89 247835_at AT5G57910 unknown 0.396 -0.084
90 255836_at AT2G33440 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.394 -0.082
91 262940_at AT1G79520 [Cation efflux family protein] 0.391 -0.000
92 253977_at AT4G26630 [DEK domain-containing chromatin associated protein] 0.390 -0.021
93 252618_at AT3G45140 ATLOX2, ARABIODOPSIS THALIANA LIPOXYGENASE 2, LOX2, lipoxygenase 2 0.388 0.004
94 267457_at AT2G33790 AGP30, arabinogalactan protein 30, ATAGP30 -1.072 0.053
95 248790_at AT5G47450 ATTIP2;3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, DELTA-TIP3, DELTA-TONOPLAST INTRINSIC PROTEIN 3, TIP2;3, tonoplast intrinsic protein 2;3 -0.971 0.107
96 262373_at AT1G73120 unknown -0.949 -0.238
97 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] -0.935 -0.076
98 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] -0.902 0.025
99 265246_at AT2G43050 ATPMEPCRD -0.877 0.030
100 253155_at AT4G35720 unknown -0.850 0.079
101 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 -0.791 -0.052
102 247362_at AT5G63140 ATPAP29, purple acid phosphatase 29, PAP29, PAP29, purple acid phosphatase 29 -0.746 -0.032
103 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.636 0.053
104 258196_at AT3G13980 unknown -0.632 0.041
105 248252_at AT5G53250 AGP22, arabinogalactan protein 22, ATAGP22, ARABINOGALACTAN PROTEIN 22 -0.630 0.025
106 262446_at AT1G49310 unknown -0.614 -0.125
107 254909_at AT4G11210 [Disease resistance-responsive (dirigent-like protein) family protein] -0.609 0.002
108 259897_at AT1G71380 ATCEL3, cellulase 3, ATGH9B3, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, CEL3, cellulase 3 -0.600 0.026
109 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 -0.600 0.090
110 247091_at AT5G66390 PRX72, PEROXIDASE 72 -0.596 -0.088
111 252529_at AT3G46490 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.595 -0.056
112 250958_at AT5G03260 LAC11, laccase 11 -0.592 0.057
113 248963_at AT5G45700 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.580 -0.063
114 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 -0.579 -0.016
115 259276_at AT3G01190 [Peroxidase superfamily protein] -0.575 0.001
116 258003_at AT3G29030 ATEXP5, ARABIDOPSIS THALIANA EXPANSIN 5, ATEXPA5, ARABIDOPSIS THALIANA EXPANSIN A5, ATHEXP ALPHA 1.4, EXP5, EXPANSIN 5, EXPA5, expansin A5 -0.569 -0.048
117 261825_at AT1G11545 XTH8, xyloglucan endotransglucosylase/hydrolase 8 -0.569 -0.077
118 252374_at AT3G48100 ARR5, response regulator 5, ATRR2, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, IBC6, INDUCED BY CYTOKININ 6, RR5, response regulator 5 -0.555 0.064
119 252317_at AT3G48720 DCF, DEFICIENT IN CUTIN FERULATE -0.553 -0.179
120 265031_at AT1G61590 [Protein kinase superfamily protein] -0.541 -0.016
121 259149_at AT3G10340 PAL4, phenylalanine ammonia-lyase 4 -0.534 0.005
122 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 -0.523 0.081
123 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.522 0.012
124 263437_at AT2G28670 ESB1, ENHANCED SUBERIN 1 -0.515 -0.054
125 261745_at AT1G08500 AtENODL18, ENODL18, early nodulin-like protein 18 -0.506 0.087
126 246142_at AT5G19970 unknown -0.506 0.053
127 254718_at AT4G13580 [Disease resistance-responsive (dirigent-like protein) family protein] -0.500 -0.060
128 251358_at AT3G61160 [Protein kinase superfamily protein] -0.496 0.092
129 265817_at AT2G18050 HIS1-3, histone H1-3 -0.495 0.216
130 261641_at AT1G27670 unknown -0.490 0.020
131 257823_at AT3G25190 [Vacuolar iron transporter (VIT) family protein] -0.487 0.071
132 267141_at AT2G38090 [Duplicated homeodomain-like superfamily protein] -0.486 0.016
133 263002_at AT1G54200 unknown -0.484 -0.096
134 253957_at AT4G26320 AGP13, arabinogalactan protein 13 -0.479 -0.034
135 251575_at AT3G58120 ATBZIP61, BZIP61 -0.478 -0.019
136 246565_at AT5G15530 BCCP2, biotin carboxyl carrier protein 2, CAC1-B -0.472 0.053
137 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.471 -0.014
138 258253_at AT3G26760 [NAD(P)-binding Rossmann-fold superfamily protein] -0.467 0.051
139 248681_at AT5G48900 [Pectin lyase-like superfamily protein] -0.461 0.015
140 253736_at AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.460 -0.053
141 246920_at AT5G25090 AtENODL13, ENODL13, early nodulin-like protein 13 -0.459 0.083
142 267006_at AT2G34190 [Xanthine/uracil permease family protein] -0.454 0.059
143 253580_at AT4G30400 [RING/U-box superfamily protein] -0.445 -0.061
144 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.445 0.083
145 251297_at AT3G62020 GLP10, germin-like protein 10 -0.444 0.084
146 259291_at AT3G11550 CASP2, Casparian strip membrane domain protein 2 -0.441 -0.084
147 262388_at AT1G49320 unknown -0.441 -0.034
148 265645_at AT2G27370 CASP3, Casparian strip membrane domain protein 3 -0.430 -0.085
149 250891_at AT5G04530 KCS19, 3-ketoacyl-CoA synthase 19 -0.429 -0.078
150 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 -0.424 -0.034
151 256237_at AT3G12610 DRT100, DNA-DAMAGE REPAIR/TOLERATION 100 -0.424 -0.007
152 260831_at AT1G06830 [Glutaredoxin family protein] -0.423 0.020
153 246425_at AT5G17420 ATCESA7, CESA7, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, IRX3, IRREGULAR XYLEM 3, MUR10, MURUS 10 -0.418 0.098
154 254914_at AT4G11290 [Peroxidase superfamily protein] -0.418 -0.025
155 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.417 -0.018
156 252172_at AT3G50640 unknown -0.414 0.008
157 250982_at AT5G03150 JKD, JACKDAW -0.413 -0.023
158 252858_at AT4G39770 TPPH, trehalose-6-phosphate phosphatase H -0.413 0.011
159 253617_at AT4G30410 [sequence-specific DNA binding transcription factors] -0.411 0.021
160 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.409 -0.014
161 254665_at AT4G18340 [Glycosyl hydrolase superfamily protein] -0.407 -0.013
162 252129_at AT3G50890 AtHB28, homeobox protein 28, HB28, homeobox protein 28, ZHD7, ZINC FINGER HOMEODOMAIN 7 -0.405 -0.058
163 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 -0.401 0.298
164 266783_at AT2G29130 ATLAC2, LAC2, laccase 2 -0.401 -0.003
165 259680_at AT1G77690 LAX3, like AUX1 3 -0.400 0.015
166 258376_at AT3G17680 [Kinase interacting (KIP1-like) family protein] -0.400 0.027
167 261893_at AT1G80690 [PPPDE putative thiol peptidase family protein] -0.399 0.014
168 247522_at AT5G61340 unknown -0.396 -0.019
169 260363_at AT1G70550 unknown -0.388 0.043
170 246135_at AT5G20885 [RING/U-box superfamily protein] -0.387 0.021
171 265250_at AT2G01950 BRL2, BRI1-like 2, VH1, VASCULAR HIGHWAY 1 -0.385 0.012
172 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 -0.385 -0.005
173 254572_at AT4G19380 [Long-chain fatty alcohol dehydrogenase family protein] -0.384 -0.177
174 263373_at AT2G20515 unknown -0.384 0.022
175 247965_at AT5G56540 AGP14, arabinogalactan protein 14, ATAGP14 -0.382 0.005
176 265823_at AT2G35760 [Uncharacterised protein family (UPF0497)] -0.379 0.011
177 266688_at AT2G19660 [Cysteine/Histidine-rich C1 domain family protein] -0.375 0.077
178 258445_at AT3G22400 ATLOX5, Arabidopsis thaliana lipoxygenase 5, LOX5 -0.373 0.024
179 248062_at AT5G55450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.373 -0.093
180 246908_at AT5G25610 ATRD22, RD22, RESPONSIVE TO DESSICATION 22 -0.372 0.030
181 256621_at AT3G24450 [Heavy metal transport/detoxification superfamily protein ] -0.371 -0.055
182 249227_at AT5G42180 PER64, peroxidase 64 -0.370 0.015
183 248646_at AT5G49100 unknown -0.369 -0.019
184 250751_at AT5G05890 [UDP-Glycosyltransferase superfamily protein] -0.369 0.059
185 249885_at AT5G22940 F8H, FRA8 homolog -0.366 0.003