4.0:Information of module
DVL4 induced
In comparison with Dark 6h wt help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009628 response to abiotic stimulus BP 1.614e-08
GO:0010033 response to organic substance BP 4.783e-07
GO:0050896 response to stimulus BP 1.552e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009813 flavonoid biosynthetic process BP 8.091e-16
GO:0009812 flavonoid metabolic process BP 2.020e-15
GO:0031347 regulation of defense response BP 5.252e-15
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
DVL4 induced		 Log2 signal ratio
Dark 6h wt
1 267075_at AT2G41070 ATBZIP12, DPBF4, EEL, ENHANCED EM LEVEL 0.662 0.590
2 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.656 0.890
3 247666_at AT5G60140 [AP2/B3-like transcriptional factor family protein] 0.654 -0.047
4 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 0.623 1.435
5 245571_at AT4G14695 [Uncharacterised protein family (UPF0041)] 0.579 0.483
6 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 0.555 3.225
7 264433_at AT1G61810 BGLU45, beta-glucosidase 45 0.543 2.752
8 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.537 -0.484
9 259953_at AT1G74810 BOR5, REQUIRES HIGH BORON 5 0.513 -0.715
10 253155_at AT4G35720 unknown 0.474 -0.047
11 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 0.461 1.436
12 251620_at AT3G58060 [Cation efflux family protein] 0.448 -0.047
13 259325_at AT3G05320 [O-fucosyltransferase family protein] 0.440 -1.769
14 256818_at AT3G21420 LBO1, LATERAL BRANCHING OXIDOREDUCTASE 1 0.429 0.386
15 259811_at AT1G49830 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.420 0.872
16 251191_at AT3G62590 [alpha/beta-Hydrolases superfamily protein] 0.357 2.028
17 250158_at AT5G15190 unknown 0.345 2.448
18 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.342 -0.983
19 247754_at AT5G59080 unknown 0.333 1.065
20 254648_at AT4G18550 AtDSEL, Arabidopsis thaliana DAD1-like seeding establishment-related lipase, DSEL, DAD1-like seeding establishment-related lipase 0.327 1.048
21 260221_at AT1G74670 GASA6, GA-stimulated Arabidopsis 6 0.325 0.063
22 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.321 2.739
23 263772_at AT2G06255 ELF4-L3, ELF4-like 3 0.320 1.864
24 245628_at AT1G56650 ATMYB75, MYB DOMAIN PROTEIN 75, MYB75, MYELOBLASTOSIS PROTEIN 75, PAP1, production of anthocyanin pigment 1, SIAA1, SUC-INDUCED ANTHOCYANIN ACCUMULATION 1 0.313 -0.578
25 252736_at AT3G43210 ATNACK2, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, NACK2, NPK1-ACTIVATING KINESIN 2, TES, TETRASPORE 0.311 0.220
26 253065_at AT4G37740 AtGRF2, growth-regulating factor 2, GRF2, growth-regulating factor 2 0.309 0.504
27 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.308 -0.978
28 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] 0.307 2.878
29 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 0.305 1.767
30 259735_at AT1G64405 unknown 0.305 -2.583
31 249872_at AT5G23130 [Peptidoglycan-binding LysM domain-containing protein] 0.299 0.009
32 247540_at AT5G61590 [Integrase-type DNA-binding superfamily protein] 0.297 1.583
33 248807_at AT5G47500 PME5, pectin methylesterase 5 0.297 -0.257
34 245136_at AT2G45210 SAG201, senescence-associated gene 201, SAUR36, SMALL AUXIN UPREGULATED 36 0.292 1.448
35 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.288 4.356
36 267077_at AT2G40970 MYBC1 0.287 0.679
37 265387_at AT2G20670 unknown 0.287 2.357
38 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 0.286 -1.531
39 251196_at AT3G62950 [Thioredoxin superfamily protein] 0.282 2.255
40 261471_at AT1G14460 [AAA-type ATPase family protein] 0.280 -1.012
41 250777_at AT5G05440 PYL5, PYRABACTIN RESISTANCE 1-LIKE 5, RCAR8, regulatory component of ABA receptor 8 0.274 -0.431
42 265724_at AT2G32100 ATOFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, OFP16, ovate family protein 16 0.270 -0.977
43 260639_at AT1G53180 unknown 0.266 1.320
44 245846_at AT1G26130 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 0.262 -0.291
45 256050_at AT1G07000 ATEXO70B2, exocyst subunit exo70 family protein B2, EXO70B2, exocyst subunit exo70 family protein B2 0.260 -0.095
46 260527_at AT2G47270 UPB1, UPBEAT1 0.259 2.233
47 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 0.254 1.372
48 248460_at AT5G50915 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.254 0.658
49 266423_at AT2G41340 RPB5D, RNA polymerase II fifth largest subunit, D 0.251 -0.671
50 261917_at AT1G65920 [Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain] 0.249 -0.448
51 252210_at AT3G50410 OBP1, OBF binding protein 1 0.248 1.012
52 250109_at AT5G15230 GASA4, GAST1 protein homolog 4 0.246 0.912
53 249115_at AT5G43810 AGO10, ARGONAUTE 10, PNH, PINHEAD, ZLL, ZWILLE 0.244 1.026
54 251373_at AT3G60530 GATA4, GATA transcription factor 4 0.243 1.217
55 247149_at AT5G65660 [hydroxyproline-rich glycoprotein family protein] 0.243 0.394
56 253908_at AT4G27260 GH3.5, WES1 0.242 3.175
57 246195_at AT4G36410 UBC17, ubiquitin-conjugating enzyme 17 0.241 0.848
58 263179_at AT1G05710 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.233 -1.880
59 259143_at AT3G10190 [Calcium-binding EF-hand family protein] 0.232 1.075
60 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.230 0.999
61 246476_at AT5G16730 [LOCATED IN: chloroplast] 0.226 1.012
62 265483_at AT2G15790 CYP40, CYCLOPHILIN 40, SQN, SQUINT 0.225 0.413
63 246103_at AT5G28640 AN3, ANGUSTIFOLIA 3, ATGIF1, ARABIDOPSIS GRF1-INTERACTING FACTOR 1, GIF, GRF1-INTERACTING FACTOR, GIF1, GRF1-INTERACTING FACTOR 1 0.223 0.380
64 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.222 0.803
65 262355_at AT1G72820 Mitochondrial substrate carrier family protein 0.222 1.109
66 262873_at AT1G64700 unknown 0.222 -0.587
67 260961_at AT1G05960 [ARM repeat superfamily protein] 0.221 0.253
68 267178_at AT2G37750 unknown 0.220 0.797
69 260287_at AT1G80440 KFB20, Kelch repeat F-box 20, KMD1, KISS ME DEADLY 1 0.219 2.514
70 264990_at AT1G27210 [ARM repeat superfamily protein] 0.218 -0.160
71 265119_at AT1G62570 FMO GS-OX4, flavin-monooxygenase glucosinolate S-oxygenase 4 0.218 -0.018
72 252357_at AT3G48410 [alpha/beta-Hydrolases superfamily protein] 0.217 2.197
73 257895_at AT3G16950 LPD1, lipoamide dehydrogenase 1, ptlpd1 0.216 2.547
74 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 0.216 8.010
75 256564_at AT3G29770 ATMES11, ARABIDOPSIS THALIANA METHYL ESTERASE 11, MES11, methyl esterase 11 0.215 -0.963
76 266593_at AT2G46200 unknown 0.215 1.214
77 248237_at AT5G53890 AtPSKR2, PSKR2, phytosylfokine-alpha receptor 2 0.215 0.115
78 252189_at AT3G50070 CYCD3;3, CYCLIN D3;3 0.215 -0.293
79 267465_at AT2G19170 SLP3, subtilisin-like serine protease 3 0.214 -0.803
80 245925_at AT5G28770 AtbZIP63, Arabidopsis thaliana basic leucine zipper 63, BZO2H3 0.214 0.349
81 251037_at AT5G02100 ORP3A, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3A, UNE18, UNFERTILIZED EMBRYO SAC 18 0.214 1.707
82 262088_at AT1G56020 unknown 0.213 -0.320
83 260515_at AT1G51460 ABCG13, ATP-binding cassette G13 0.207 -0.047
84 257076_at AT3G19680 unknown 0.206 0.567
85 266489_at AT2G35190 ATNPSN11, NPSN11, novel plant snare 11, NSPN11 0.206 -1.689
86 249415_at AT5G39660 CDF2, cycling DOF factor 2 0.205 -1.726
87 256510_at AT1G33360 [ATP-dependent Clp protease] 0.202 -0.446
88 260776_at AT1G14580 [C2H2-like zinc finger protein] 0.202 0.685
89 251584_at AT3G58620 TTL4, tetratricopetide-repeat thioredoxin-like 4 0.200 1.700
90 261312_at AT1G05790 [lipase class 3 family protein] 0.200 1.298
91 263126_at AT1G78460 [SOUL heme-binding family protein] 0.200 1.928
92 261727_at AT1G76090 SMT3, sterol methyltransferase 3 0.200 2.805
93 265451_at AT2G46490 unknown 0.200 1.047
94 245362_at AT4G17460 HAT1, JAB, JAIBA 0.199 1.372
95 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.199 4.931
96 249493_at AT5G39080 [HXXXD-type acyl-transferase family protein] 0.198 -1.775
97 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 0.198 3.883
98 248879_at AT5G46180 DELTA-OAT, ornithine-delta-aminotransferase 0.197 2.254
99 245657_at AT1G56720 [Protein kinase superfamily protein] 0.196 -0.346
100 265471_at AT2G37130 [Peroxidase superfamily protein] 0.196 0.811
101 260944_at AT1G45130 AtBGAL5, BGAL5, beta-galactosidase 5 0.194 0.621
102 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 -0.536 -0.435
103 247602_at AT5G60900 RLK1, receptor-like protein kinase 1 -0.485 -2.913
104 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] -0.484 -0.851
105 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) -0.446 -6.319
106 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 -0.429 -0.395
107 251621_at AT3G57700 [Protein kinase superfamily protein] -0.421 -0.047
108 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] -0.409 1.120
109 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.397 -0.766
110 263031_at AT1G24070 ATCSLA10, cellulose synthase-like A10, CSLA10, CELLULOSE SYNTHASE LIKE A10, CSLA10, cellulose synthase-like A10 -0.392 -1.758
111 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -0.391 -6.244
112 256577_at AT3G28220 [TRAF-like family protein] -0.386 0.228
113 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 -0.375 -0.175
114 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -0.370 -3.645
115 247684_at AT5G59670 [Leucine-rich repeat protein kinase family protein] -0.369 -3.750
116 261684_at AT1G47400 unknown -0.344 -4.832
117 258982_at AT3G08870 LecRK-VI.1, L-type lectin receptor kinase VI.1 -0.342 -2.297
118 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 -0.340 -0.579
119 258787_at AT3G11840 PUB24, plant U-box 24 -0.337 -0.753
120 256891_at AT3G19030 unknown -0.322 -2.365
121 248062_at AT5G55450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.317 -4.389
122 254416_at AT4G21380 ARK3, receptor kinase 3, RK3, receptor kinase 3 -0.310 -0.860
123 259320_at AT3G01080 ATWRKY58, WRKY DNA-BINDING PROTEIN 58, WRKY58, WRKY DNA-binding protein 58 -0.307 -1.529
124 258349_at AT3G17609 HYH, HY5-homolog -0.307 -6.708
125 258675_at AT3G08770 LTP6, lipid transfer protein 6 -0.296 -1.720
126 261191_at AT1G32900 GBSS1, granule bound starch synthase 1 -0.294 -3.358
127 256603_at AT3G28270 unknown -0.293 -4.823
128 259609_at AT1G52410 AtTSA1, TSA1, TSK-associating protein 1 -0.292 -1.001
129 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] -0.289 -2.354
130 250968_at AT5G02890 [HXXXD-type acyl-transferase family protein] -0.286 -2.055
131 250828_at AT5G05250 unknown -0.286 -3.341
132 261339_at AT1G35710 [Protein kinase family protein with leucine-rich repeat domain] -0.281 -1.741
133 257262_at AT3G21890 BBX31, B-box domain protein 31 -0.280 -4.683
134 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like -0.279 -4.294
135 263739_at AT2G21320 BBX18, B-box domain protein 18 -0.267 -3.064
136 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 -0.267 -5.452
137 255116_at AT4G08850 [Leucine-rich repeat receptor-like protein kinase family protein] -0.257 -0.668
138 254289_at AT4G22980 unknown -0.256 -1.760
139 248625_at AT5G48880 KAT5, 3-KETO-ACYL-COENZYME A THIOLASE 5, PKT1, PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, PKT2, peroxisomal 3-keto-acyl-CoA thiolase 2 -0.256 1.099
140 247351_at AT5G63790 ANAC102, NAC domain containing protein 102, NAC102, NAC domain containing protein 102 -0.255 -0.322
141 246125_at AT5G19875 unknown -0.254 -0.942
142 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 -0.250 0.331
143 259560_at AT1G21270 WAK2, wall-associated kinase 2 -0.248 -0.796
144 255604_at AT4G01080 TBL26, TRICHOME BIREFRINGENCE-LIKE 26 -0.248 -2.629
145 256366_at AT1G66880 [Protein kinase superfamily protein] -0.247 -0.766
146 252619_at AT3G45210 unknown -0.245 -1.908
147 249191_at AT5G42760 [Leucine carboxyl methyltransferase] -0.241 -5.648
148 264200_at AT1G22650 A/N-InvD, alkaline/neutral invertase D -0.238 -0.300
149 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 -0.238 -2.120
150 245277_at AT4G15550 IAGLU, indole-3-acetate beta-D-glucosyltransferase -0.238 -2.232
151 253817_at AT4G28310 unknown -0.237 -2.666
152 263264_at AT2G38810 HTA8, histone H2A 8 -0.235 -0.647
153 255795_at AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 -0.234 1.225
154 249774_at AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 -0.230 -4.143
155 257074_at AT3G19660 unknown -0.228 0.558
156 263918_at AT2G36590 ATPROT3, PROLINE TRANSPORTER 3, ProT3, proline transporter 3 -0.227 -4.552
157 258537_at AT3G04210 [Disease resistance protein (TIR-NBS class)] -0.225 -1.684
158 251063_at AT5G01850 [Protein kinase superfamily protein] -0.224 -1.921
159 265075_at AT1G55450 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.224 -0.020
160 257610_at AT3G13810 AtIDD11, indeterminate(ID)-domain 11, IDD11, indeterminate(ID)-domain 11 -0.223 -0.380
161 267288_at AT2G23680 [Cold acclimation protein WCOR413 family] -0.223 -1.421
162 252365_at AT3G48350 CEP3, cysteine endopeptidase 3 -0.222 -0.212
163 261921_at AT1G65900 unknown -0.221 -1.108
164 267381_at AT2G26190 [calmodulin-binding family protein] -0.218 -0.178
165 247554_at AT5G61010 ATEXO70E2, exocyst subunit exo70 family protein E2, EXO70E2, exocyst subunit exo70 family protein E2 -0.217 -0.811
166 252661_at AT3G44450 unknown -0.217 -4.233
167 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 -0.216 -2.681
168 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 -0.213 -1.309
169 261059_at AT1G01250 [Integrase-type DNA-binding superfamily protein] -0.212 0.344
170 256653_at AT3G18870 [Mitochondrial transcription termination factor family protein] -0.210 0.259
171 260343_at AT1G69200 FLN2, fructokinase-like 2 -0.210 -2.606
172 266993_at AT2G39210 [Major facilitator superfamily protein] -0.210 -0.636
173 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 -0.209 -2.904
174 257535_at AT3G09490 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.209 -0.973
175 252442_at AT3G46940 DUT1, DUTP-PYROPHOSPHATASE-LIKE 1 -0.208 -2.061
176 261301_at AT1G48570 [zinc finger (Ran-binding) family protein] -0.208 -1.022
177 247218_at AT5G65010 ASN2, asparagine synthetase 2 -0.203 -2.806
178 266760_at AT2G46870 NGA1, NGATHA1 -0.201 -0.605
179 248341_at AT5G52220 unknown -0.198 -1.351
180 264357_at AT1G03360 ATRRP4, ribosomal RNA processing 4, RRP4, ribosomal RNA processing 4 -0.196 -0.525
181 260303_at AT1G70520 ASG6, ALTERED SEED GERMINATION 6, CRK2, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 -0.195 0.123
182 266264_at AT2G27775 unknown -0.194 -2.204
183 260601_at AT1G55910 ZIP11, zinc transporter 11 precursor -0.193 -3.109
184 252377_at AT3G47960 AtNPF2.10, GTR1, GLUCOSINOLATE TRANSPORTER-1, NPF2.10, NRT1/ PTR family 2.10 -0.192 -2.297
185 265960_at AT2G37470 [Histone superfamily protein] -0.190 1.217
186 265939_at AT2G19650 [Cysteine/Histidine-rich C1 domain family protein] -0.190 -3.609
187 263419_at AT2G17220 Kin3, kinase 3 -0.190 -1.084
188 264951_at AT1G76970 [Target of Myb protein 1] -0.190 -0.796
189 256547_at AT3G14840 [Leucine-rich repeat transmembrane protein kinase] -0.189 0.218
190 265097_at AT1G04020 ATBARD1, BARD1, breast cancer associated RING 1, ROW1 -0.189 -1.468
191 260419_at AT1G69730 [Wall-associated kinase family protein] -0.189 -2.689
192 264262_at AT1G09200 H3.1, histone 3.1 -0.189 -0.839
193 266277_at AT2G29310 [NAD(P)-binding Rossmann-fold superfamily protein] -0.189 0.515
194 265831_at AT2G14460 unknown -0.188 -2.341
195 257654_at AT3G13310 DJC66, DNA J protein C66 -0.187 3.276
196 258893_at AT3G05660 AtRLP33, receptor like protein 33, RLP33, receptor like protein 33 -0.187 2.306
197 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 -0.185 -3.505
198 263693_at AT1G31200 ATPP2-A9, phloem protein 2-A9, PP2-A9, phloem protein 2-A9 -0.185 -2.254
199 250696_at AT5G06790 unknown -0.184 -3.020
200 249719_at AT5G35735 [Auxin-responsive family protein] -0.184 -1.197
201 252132_at AT3G50790 [esterase/lipase/thioesterase family protein] -0.184 -0.157