4.0:Information of module
LEAFY-GR DEX +CHX
In comparison with sfr2 cold help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009725 response to hormone BP 1.686e-04
GO:0009719 response to endogenous stimulus BP 1.386e-03
GO:0009733 response to auxin BP 2.816e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 5.213e-06
GO:0071705 nitrogen compound transport BP 2.159e-05
GO:0006820 anion transport BP 3.135e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
LEAFY-GR DEX +CHX		 Log2 signal ratio
sfr2 cold
1 247610_at AT5G60630 unknown 1.150 -0.040
2 254413_at AT4G21440 ATM4, A. THALIANA MYB 4, ATMYB102, MYB-like 102, MYB102, MYB102, MYB-like 102 0.918 -0.023
3 259596_at AT1G28130 GH3.17 0.772 -0.022
4 261717_at AT1G18400 BEE1, BR enhanced expression 1 0.758 -0.020
5 250936_at AT5G03120 unknown 0.617 -0.267
6 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 0.405 -0.020
7 248801_at AT5G47370 HAT2 0.403 -0.002
8 257570_at AT3G13662 [Disease resistance-responsive (dirigent-like protein) family protein] 0.333 -0.001
9 252058_at AT3G52470 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.304 -0.031
10 263467_at AT2G31730 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.298 -0.032
11 260170_at AT1G71890 ATSUC5, SUCROSE-PROTON SYMPORTER 5, SUC5 0.289 -0.051
12 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 0.270 -0.074
13 245697_at AT5G04200 AtMC9, metacaspase 9, AtMCP2f, metacaspase 2f, MC9, metacaspase 9, MCP2f, metacaspase 2f 0.240 0.062
14 249932_at AT5G22390 unknown 0.239 -0.007
15 264104_at AT2G13750 [CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-17 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.221 -0.016
16 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 0.195 -0.002
17 266757_at AT2G46940 unknown 0.166 -0.056
18 266447_at AT2G43290 MSS3, multicopy suppressors of snf4 deficiency in yeast 3 0.163 -0.225
19 260484_at AT1G68360 [C2H2 and C2HC zinc fingers superfamily protein] 0.162 -0.072
20 250300_at AT5G11890 EMB3135, EMBRYO DEFECTIVE 3135 0.159 -0.021
21 246808_at AT5G27110 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.153 0.059
22 253994_at AT4G26080 ABI1, ABA INSENSITIVE 1, AtABI1 0.149 -0.030
23 247415_at AT5G63060 [Sec14p-like phosphatidylinositol transfer family protein] 0.141 0.007
24 247474_at AT5G62280 unknown -0.446 0.152
25 252212_at AT3G50310 MAPKKK20, mitogen-activated protein kinase kinase kinase 20, MKKK20, MAPKK kinase 20 -0.334 0.033
26 248062_at AT5G55450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.308 0.040
27 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.281 0.229
28 267559_at AT2G45570 CYP76C2, cytochrome P450, family 76, subfamily C, polypeptide 2 -0.230 0.057
29 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 -0.223 -0.073
30 266011_at AT2G37440 [DNAse I-like superfamily protein] -0.214 0.001
31 246195_at AT4G36410 UBC17, ubiquitin-conjugating enzyme 17 -0.210 0.057
32 253332_at AT4G33420 [Peroxidase superfamily protein] -0.198 0.033
33 247778_at AT5G58750 [NAD(P)-binding Rossmann-fold superfamily protein] -0.180 0.006
34 265467_at AT2G37050 [Leucine-rich repeat protein kinase family protein] -0.175 0.005
35 256981_at AT3G13380 BRL3, BRI1-like 3 -0.175 -0.000
36 259127_at AT3G02270 [Trimeric LpxA-like enzyme] -0.165 0.016
37 262603_at AT1G15380 GLYI4, glyoxylase I 4 -0.161 -0.079
38 260648_at AT1G08050 [Zinc finger (C3HC4-type RING finger) family protein] -0.160 0.014
39 267238_at AT2G44130 KMD3, KISS ME DEADLY 3 -0.159 0.009
40 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -0.156 -0.060
41 267008_at AT2G39350 ABCG1, ATP-binding cassette G1 -0.153 0.038
42 256021_at AT1G58270 ZW9 -0.151 -0.031
43 253277_at AT4G34230 ATCAD5, cinnamyl alcohol dehydrogenase 5, CAD-5, cinnamyl alcohol dehydrogenase 5, CAD5, cinnamyl alcohol dehydrogenase 5 -0.148 0.001
44 246298_at AT3G51770 ATEOL1, ARABIDOPSIS ETHYLENE OVERPRODUCER 1, ETO1, ETHYLENE OVERPRODUCER 1 -0.148 -0.056
45 259421_at AT1G13910 [Leucine-rich repeat (LRR) family protein] -0.148 -0.012