4.0:Information of module
35S::LFY
In comparison with ice1 6H Cold help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019752 carboxylic acid metabolic process BP 2.020e-12
GO:0006082 organic acid metabolic process BP 3.516e-12
GO:0043436 oxoacid metabolic process BP 3.516e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0000041 transition metal ion transport BP 1.001e-10
GO:0010167 response to nitrate BP 9.132e-10
GO:0015706 nitrate transport BP 1.612e-09
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
35S::LFY		 Log2 signal ratio
ice1 6H Cold
1 254452_at AT4G21100 DDB1B, damaged DNA binding protein 1B 0.834 0.107
2 247866_at AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 0.727 0.053
3 264514_at AT1G09500 [NAD(P)-binding Rossmann-fold superfamily protein] 0.698 0.462
4 250445_at AT5G10760 [Eukaryotic aspartyl protease family protein] 0.680 0.552
5 246531_at AT5G15800 AGL2, AGAMOUS-like 2, SEP1, SEPALLATA1 0.628 -0.058
6 247490_at AT5G61850 LFY, LEAFY, LFY3, LEAFY 3 0.625 -0.049
7 261684_at AT1G47400 unknown 0.600 0.091
8 246273_at AT4G36700 [RmlC-like cupins superfamily protein] 0.591 0.838
9 247610_at AT5G60630 unknown 0.579 0.290
10 251677_at AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 0.491 -0.138
11 262760_at AT1G10770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.490 -0.157
12 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.487 0.623
13 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 0.462 0.211
14 251293_at AT3G61930 unknown 0.424 0.469
15 246036_at AT5G08370 AGAL2, alpha-galactosidase 2, AtAGAL2, alpha-galactosidase 2 0.402 0.152
16 264635_at AT1G65500 unknown 0.398 0.936
17 263482_at AT2G03980 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.397 0.133
18 262381_at AT1G72900 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.390 0.448
19 251363_at AT3G61250 AtMYB17, myb domain protein 17, LMI2, LATE MERISTEM IDENTITY2, MYB17, myb domain protein 17 0.386 -0.129
20 245343_at AT4G15830 [ARM repeat superfamily protein] 0.348 -0.148
21 245422_at AT4G17470 [alpha/beta-Hydrolases superfamily protein] 0.337 -0.074
22 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.334 0.047
23 257206_at AT3G16530 [Legume lectin family protein] 0.332 0.121
24 264751_at AT1G23020 ATFRO3, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 0.306 0.063
25 245253_at AT4G15440 CYP74B2, HPL1, hydroperoxide lyase 1 0.294 -0.068
26 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] 0.292 -0.053
27 255604_at AT4G01080 TBL26, TRICHOME BIREFRINGENCE-LIKE 26 0.287 0.214
28 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 0.286 -0.348
29 250828_at AT5G05250 unknown 0.282 -0.053
30 250054_at AT5G17860 CAX7, calcium exchanger 7 0.275 0.264
31 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 0.274 0.279
32 264866_at AT1G24140 [Matrixin family protein] 0.272 0.294
33 266901_at AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B 0.269 0.120
34 248864_at AT5G46760 MYC3 0.258 0.096
35 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.258 0.090
36 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 0.244 -0.218
37 248868_at AT5G46780 [VQ motif-containing protein] 0.244 0.288
38 245296_at AT4G16370 oligopeptide transporter 0.228 0.141
39 257421_at AT1G12030 unknown 0.224 0.241
40 247001_at AT5G67330 ATNRAMP4, ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, NRAMP4, natural resistance associated macrophage protein 4 0.223 0.076
41 246228_at AT4G36430 [Peroxidase superfamily protein] 0.214 0.215
42 259999_at AT1G68080 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.211 -0.131
43 251586_at AT3G58070 GIS, GLABROUS INFLORESCENCE STEMS 0.206 -0.367
44 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 0.204 0.430
45 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 0.202 0.239
46 254232_at AT4G23600 CORI3, CORONATINE INDUCED 1, JR2, JASMONIC ACID RESPONSIVE 2 0.198 0.449
47 248270_at AT5G53450 ORG1, OBP3-responsive gene 1 0.198 -0.076
48 259640_at AT1G52400 ATBG1, A. THALIANA BETA-GLUCOSIDASE 1, BGL1, BETA-GLUCOSIDASE HOMOLOG 1, BGLU18, beta glucosidase 18 0.195 0.205
49 257062_at AT3G18290 BTS, BRUTUS, EMB2454, embryo defective 2454 0.193 -0.132
50 250248_at AT5G13740 ZIF1, zinc induced facilitator 1 0.186 -0.143
51 248719_at AT5G47910 ATRBOHD, RBOHD, respiratory burst oxidase homologue D 0.182 0.093
52 255733_at AT1G25400 unknown 0.182 -0.022
53 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 0.181 0.418
54 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.180 0.290
55 251373_at AT3G60530 GATA4, GATA transcription factor 4 0.173 -0.434
56 262529_at AT1G17250 AtRLP3, receptor like protein 3, RFO2, RESISTANCE TO FUSARIUM OXYSPORUM 2, RLP3, receptor like protein 3 0.173 0.192
57 256096_at AT1G13650 unknown -0.570 -0.588
58 249675_at AT5G35940 [Mannose-binding lectin superfamily protein] -0.470 0.171
59 247878_at AT5G57760 unknown -0.446 -0.698
60 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 -0.437 -0.149
61 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 -0.385 -0.308
62 248790_at AT5G47450 ATTIP2;3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, DELTA-TIP3, DELTA-TONOPLAST INTRINSIC PROTEIN 3, TIP2;3, tonoplast intrinsic protein 2;3 -0.373 -0.195
63 267457_at AT2G33790 AGP30, arabinogalactan protein 30, ATAGP30 -0.352 -0.290
64 247136_at AT5G66170 STR18, sulfurtransferase 18 -0.341 0.125
65 246947_at AT5G25120 CYP71B11, ytochrome p450, family 71, subfamily B, polypeptide 11 -0.338 0.041
66 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier -0.329 -0.071
67 266403_at AT2G38600 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.324 -0.058
68 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.319 -0.423
69 260527_at AT2G47270 UPB1, UPBEAT1 -0.319 -0.270
70 252073_at AT3G51750 unknown -0.299 -0.292
71 251928_at AT3G53980 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.296 -0.210
72 254606_at AT4G19030 AT-NLM1, ATNLM1, NOD26-LIKE MAJOR INTRINSIC PROTEIN 1, NIP1;1, NOD26-LIKE INTRINSIC PROTEIN 1;1, NLM1, NOD26-like major intrinsic protein 1 -0.291 -0.292
73 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 -0.290 0.054
74 248252_at AT5G53250 AGP22, arabinogalactan protein 22, ATAGP22, ARABINOGALACTAN PROTEIN 22 -0.281 -0.220
75 257516_at AT1G69040 ACR4, ACT domain repeat 4 -0.274 -0.429
76 253957_at AT4G26320 AGP13, arabinogalactan protein 13 -0.267 -0.192
77 262080_at AT1G59650 CW14 -0.254 0.032
78 262232_at AT1G68600 [Aluminium activated malate transporter family protein] -0.252 0.391
79 256891_at AT3G19030 unknown -0.239 -0.054
80 252882_at AT4G39675 unknown -0.238 -0.160
81 258080_at AT3G25930 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.230 -0.439
82 248178_at AT5G54370 [Late embryogenesis abundant (LEA) protein-related] -0.229 -0.155
83 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 -0.229 0.163
84 253515_at AT4G31320 SAUR37, SMALL AUXIN UPREGULATED RNA 37 -0.227 -0.125
85 257823_at AT3G25190 [Vacuolar iron transporter (VIT) family protein] -0.225 -0.279
86 261448_at AT1G21140 [Vacuolar iron transporter (VIT) family protein] -0.219 -0.179
87 260668_at AT1G19530 unknown -0.217 -0.246
88 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 -0.216 -0.214
89 248377_at AT5G51720 At-NEET, NEET, NEET group protein -0.214 -0.429
90 252624_at AT3G44735 ATPSK3, PHYTOSULFOKINE 3 PRECURSOR, PSK1, PSK3, PHYTOSULFOKINE 3 PRECURSOR -0.209 -0.092
91 254057_at AT4G25170 [Uncharacterised conserved protein (UCP012943)] -0.209 -0.256
92 247965_at AT5G56540 AGP14, arabinogalactan protein 14, ATAGP14 -0.206 -0.198
93 246462_at AT5G16940 [carbon-sulfur lyases] -0.204 -0.188
94 262533_at AT1G17090 unknown -0.201 0.053
95 250541_at AT5G09520 PELPK2, Pro-Glu-Leu|Ile|Val-Pro-Lys 2 -0.198 -0.187
96 253227_at AT4G35030 [Protein kinase superfamily protein] -0.196 0.006
97 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] -0.194 -0.424
98 263276_at AT2G14100 CYP705A13, cytochrome P450, family 705, subfamily A, polypeptide 13 -0.190 -0.016
99 250475_at AT5G10180 AST68, ARABIDOPSIS SULFATE TRANSPORTER 68, SULTR2;1, sulfate transporter 2;1 -0.189 0.073
100 253172_at AT4G35060 HIPP25, heavy metal associated isoprenylated plant protein 25 -0.188 0.107
101 248975_at AT5G45040 CYTC6A, cytochrome c6A -0.186 -0.511
102 254240_at AT4G23496 SP1L5, SPIRAL1-like5 -0.176 -0.187
103 262831_at AT1G14730 [Cytochrome b561/ferric reductase transmembrane protein family] -0.173 -0.207
104 254361_at AT4G22212 [Arabidopsis defensin-like protein] -0.173 -0.113
105 255691_at AT4G00370 ANTR2, PHT4;4, anion transporter 2 -0.173 -0.073
106 246142_at AT5G19970 unknown -0.170 -0.127
107 258184_at AT3G21510 AHP1, histidine-containing phosphotransmitter 1 -0.166 -0.015
108 261576_at AT1G01070 UMAMIT28, Usually multiple acids move in and out Transporters 28 -0.163 0.319
109 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 -0.162 -0.011
110 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 -0.162 0.111
111 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.161 -0.130