4.0:Information of module
WT Nitrate 0.5h
In comparison with Whole root - low pH 3H help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0015698 inorganic anion transport BP 1.373e-13
GO:0050896 response to stimulus BP 2.588e-12
GO:0006820 anion transport BP 1.652e-11
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0071229 cellular response to acid chemical BP 3.845e-06
GO:1901701 cellular response to oxygen-containing c... BP 5.491e-05
GO:0070887 cellular response to chemical stimulus BP 5.801e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT Nitrate 0.5h		 Log2 signal ratio
Whole root - low pH 3H
1 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 1.277 -0.129
2 250472_at AT5G10210 unknown 1.166 -0.060
3 265766_at AT2G48080 [oxidoreductase, 2OG-Fe(II) oxygenase family protein] 1.048 -0.047
4 257645_at AT3G25790 [myb-like transcription factor family protein] 1.020 0.164
5 255945_at AT5G28610 unknown 0.964 0.031
6 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.932 0.088
7 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.926 0.579
8 265475_at AT2G15620 ATHNIR, ARABIDOPSIS THALIANA NITRITE REDUCTASE, NIR, NITRITE REDUCTASE, NIR1, nitrite reductase 1 0.874 0.162
9 253408_at AT4G32950 [Protein phosphatase 2C family protein] 0.834 -0.054
10 262180_at AT1G78050 PGM, phosphoglycerate/bisphosphoglycerate mutase 0.771 0.047
11 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 0.758 -0.017
12 252557_at AT3G45960 ATEXLA3, expansin-like A3, ATEXPL3, ATHEXP BETA 2.3, EXLA3, expansin-like A3, EXPL3 0.745 0.078
13 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 0.740 0.124
14 250597_at AT5G07680 ANAC079, Arabidopsis NAC domain containing protein 79, ANAC080, NAC domain containing protein 80, ATNAC4, NAC080, NAC domain containing protein 80, NAC4 0.732 0.158
15 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] 0.727 0.073
16 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.683 -0.090
17 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.665 -0.144
18 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] 0.654 0.208
19 254027_at AT4G25835 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.646 -0.231
20 264282_at AT1G61840 [Cysteine/Histidine-rich C1 domain family protein] 0.645 -0.267
21 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.644 0.010
22 247228_at AT5G65140 TPPJ, trehalose-6-phosphate phosphatase J 0.641 -0.031
23 246996_at AT5G67420 ASL39, ASYMMETRIC LEAVES2-LIKE 39, LBD37, LOB domain-containing protein 37 0.639 0.072
24 259015_at AT3G07350 unknown 0.627 -0.030
25 260284_at AT1G80380 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.622 -0.101
26 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.618 0.138
27 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.604 0.228
28 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 0.590 0.355
29 256162_at AT1G55390 [Cysteine/Histidine-rich C1 domain family protein] 0.587 0.137
30 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.584 -0.035
31 262399_at AT1G49500 unknown 0.580 -0.022
32 260771_at AT1G49160 WNK7 0.579 -0.104
33 260623_at AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 0.577 -0.306
34 250493_at AT5G09800 [ARM repeat superfamily protein] 0.567 -0.076
35 255669_at AT4G00416 MBD3, methyl-CPG-binding domain 3 0.565 0.035
36 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier 0.562 -0.129
37 252989_at AT4G38420 sks9, SKU5 similar 9 0.556 0.341
38 259996_at AT1G67910 unknown 0.551 0.143
39 246142_at AT5G19970 unknown 0.544 -0.040
40 266222_at AT2G28780 unknown 0.517 -0.043
41 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 0.514 0.168
42 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.510 -0.050
43 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 0.502 0.302
44 261791_at AT1G16170 unknown 0.495 0.034
45 267215_at AT2G02630 [Cysteine/Histidine-rich C1 domain family protein] 0.490 0.104
46 249325_at AT5G40850 UPM1, urophorphyrin methylase 1 0.487 0.152
47 253317_at AT4G33960 unknown 0.478 0.079
48 254707_at AT4G18010 5PTASE2, myo-inositol polyphosphate 5-phosphatase 2, AT5PTASE2, myo-inositol polyphosphate 5-phosphatase 2, IP5PII, INOSITOL(1,4,5)P3 5-PHOSPHATASE II 0.478 -0.037
49 266313_at AT2G26980 CIPK3, CBL-interacting protein kinase 3, SnRK3.17, SNF1-RELATED PROTEIN KINASE 3.17 0.477 0.009
50 255568_at AT4G01250 AtWRKY22, WRKY22 0.474 0.007
51 247674_at AT5G59930 [Cysteine/Histidine-rich C1 domain family protein] 0.471 0.301
52 261979_at AT1G37130 ATNR2, ARABIDOPSIS NITRATE REDUCTASE 2, B29, CHL3, CHLORATE RESISTANT 3, NIA2, nitrate reductase 2, NIA2-1, NR, NITRATE REDUCTASE, NR2, NITRATE REDUCTASE 2 0.469 0.190
53 246868_at AT5G26010 [Protein phosphatase 2C family protein] 0.462 -0.039
54 254125_at AT4G24670 TAR2, tryptophan aminotransferase related 2 0.449 -0.069
55 252858_at AT4G39770 TPPH, trehalose-6-phosphate phosphatase H 0.445 -0.180
56 246085_at AT5G20540 ATBRXL4, BREVIS RADIX-like 4, BRX-LIKE4, BRXL4, BREVIS RADIX-like 4 0.443 0.010
57 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 0.441 -0.018
58 263800_at AT2G24600 [Ankyrin repeat family protein] 0.438 0.305
59 254665_at AT4G18340 [Glycosyl hydrolase superfamily protein] 0.437 -0.173
60 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.431 0.510
61 254949_at AT4G11020 unknown 0.430 -0.141
62 267240_at AT2G02680 [Cysteine/Histidine-rich C1 domain family protein] 0.430 0.056
63 250559_at AT5G08010 unknown 0.429 -0.024
64 247443_at AT5G62720 [Integral membrane HPP family protein] 0.428 0.043
65 256788_at AT3G13730 CYP90D1, cytochrome P450, family 90, subfamily D, polypeptide 1 0.423 -0.004
66 255734_at AT1G25550 [myb-like transcription factor family protein] 0.423 0.030
67 258437_at AT3G16560 [Protein phosphatase 2C family protein] 0.421 -0.031
68 253036_at AT4G38340 NLP3, NIN-like protein 3 0.420 0.008
69 266851_at AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 0.420 -0.064
70 253571_at AT4G31000 [Calmodulin-binding protein] 0.417 0.017
71 245504_at AT4G15660 [Thioredoxin superfamily protein] 0.415 -0.024
72 262671_at AT1G76040 CPK29, calcium-dependent protein kinase 29 0.412 -0.057
73 245506_at AT4G15700 [Thioredoxin superfamily protein] 0.411 0.001
74 250463_at AT5G10030 OBF4, OCS ELEMENT BINDING FACTOR 4, TGA4, TGACG motif-binding factor 4 0.408 0.000
75 252501_at AT3G46880 unknown 0.408 -0.113
76 255041_at AT4G09620 [Mitochondrial transcription termination factor family protein] 0.408 0.055
77 260059_at AT1G78090 ATTPPB, Arabidopsis thaliana trehalose-6-phosphate phosphatase B, TPPB, trehalose-6-phosphate phosphatase B 0.407 -0.001
78 255064_at AT4G08950 EXO, EXORDIUM 0.405 0.555
79 259261_at AT3G11390 [Cysteine/Histidine-rich C1 domain family protein] 0.405 0.117
80 250107_at AT5G15330 ATSPX4, ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX4, SPX domain gene 4 0.405 -0.045
81 245977_at AT5G13110 G6PD2, glucose-6-phosphate dehydrogenase 2 0.405 0.075
82 247452_at AT5G62430 CDF1, cycling DOF factor 1 0.402 0.028
83 248400_at AT5G52020 [Integrase-type DNA-binding superfamily protein] 0.401 0.149
84 250771_at AT5G05400 [LRR and NB-ARC domains-containing disease resistance protein] 0.397 0.043
85 261806_at AT1G30510 ATRFNR2, root FNR 2, RFNR2, root FNR 2 0.395 0.027
86 254200_at AT4G24110 unknown 0.394 0.284
87 262525_at AT1G17060 CHI2, CHIBI 2, CYP72C1, cytochrome p450 72c1, SHK1, SHRINK 1, SOB7, SUPPRESSOR OF PHYB-4 7 0.394 0.232
88 263486_at AT2G22200 [Integrase-type DNA-binding superfamily protein] 0.394 0.053
89 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.388 -0.010
90 258349_at AT3G17609 HYH, HY5-homolog 0.386 0.068
91 248199_at AT5G54170 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.386 0.048
92 253483_at AT4G31910 BAT1, BR-related AcylTransferase1, PIZ, PIZZA 0.385 0.009
93 262284_at AT1G68670 [myb-like transcription factor family protein] 0.380 0.008
94 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 0.377 0.088
95 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 -0.537 0.008
96 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G -0.453 0.020
97 254632_at AT4G18630 unknown -0.448 -0.033
98 267228_at AT2G43890 [Pectin lyase-like superfamily protein] -0.378 -0.768
99 245401_at AT4G17670 unknown -0.361 0.139
100 265683_at AT2G24400 SAUR38, SMALL AUXIN UPREGULATED RNA 38 -0.360 -0.624
101 260924_at AT1G21590 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.343 -0.049
102 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 -0.326 0.097
103 257927_at AT3G23240 ATERF1, ETHYLENE RESPONSE FACTOR 1, ERF1, ethylene response factor 1 -0.321 0.002
104 264543_at AT1G55790 [FUNCTIONS IN: metal ion binding] -0.319 -0.064
105 248040_at AT5G55970 [RING/U-box superfamily protein] -0.316 0.040
106 252596_at AT3G45330 LecRK-I.1, L-type lectin receptor kinase I.1 -0.311 -0.076
107 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] -0.310 -0.142
108 267222_at AT2G43880 [Pectin lyase-like superfamily protein] -0.306 -0.477
109 250992_at AT5G02260 ATEXP9, ATEXPA9, expansin A9, ATHEXP ALPHA 1.10, EXP9, EXPA9, expansin A9 -0.305 -0.362
110 246401_at AT1G57560 AtMYB50, myb domain protein 50, MYB50, myb domain protein 50 -0.301 -0.038
111 261956_at AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] -0.301 -0.028
112 251434_at AT3G59850 [Pectin lyase-like superfamily protein] -0.289 -0.183
113 248700_at AT5G48400 ATGLR1.2, GLR1.2, GLUTAMATE RECEPTOR 1.2 -0.278 -0.010
114 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.278 -0.006
115 261139_at AT1G19700 BEL10, BEL1-like homeodomain 10, BLH10, BEL1-LIKE HOMEODOMAIN 10 -0.277 -0.012
116 250344_at AT5G11930 [Thioredoxin superfamily protein] -0.275 0.054
117 254347_at AT4G22070 ATWRKY31, WRKY31, WRKY DNA-binding protein 31 -0.274 0.026
118 254905_at AT4G11170 RMG1, Resistance Methylated Gene 1 -0.270 -0.040
119 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 -0.267 -0.003
120 259540_at AT1G20640 NLP4, NIN-like protein 4 -0.265 0.005
121 251481_at AT3G59730 LecRK-V.6, L-type lectin receptor kinase V.6 -0.263 -0.118
122 252200_at AT3G50280 [HXXXD-type acyl-transferase family protein] -0.261 -0.040
123 257353_at AT2G23050 MEL4, MAB4/ENP/NPY1-LIKE 4, NPY4, NAKED PINS IN YUC MUTANTS 4 -0.259 -0.345
124 253406_at AT4G32890 GATA9, GATA transcription factor 9 -0.255 0.132
125 245445_at AT4G16750 [Integrase-type DNA-binding superfamily protein] -0.255 0.129
126 260540_at AT2G43500 NLP8, NIN-like protein 8 -0.250 0.171
127 263194_at AT1G36060 [Integrase-type DNA-binding superfamily protein] -0.241 -0.195
128 262788_at AT1G10690 unknown -0.237 0.061
129 254301_at AT4G22790 [MATE efflux family protein] -0.235 -0.048
130 251104_at AT5G01720 [RNI-like superfamily protein] -0.230 0.083
131 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -0.230 0.099
132 251706_at AT3G56620 UMAMIT10, Usually multiple acids move in and out Transporters 10 -0.226 0.021
133 248132_at AT5G54840 ATSGP1, SGP1 -0.225 0.068
134 250031_at AT5G18240 ATMYR1, ARABIDOPSIS MYB-RELATED PROTEIN 1, MYR1, myb-related protein 1 -0.219 0.001
135 249941_at AT5G22270 unknown -0.215 0.047
136 250745_at AT5G05850 PIRL1, plant intracellular ras group-related LRR 1 -0.215 0.025
137 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 -0.213 0.135
138 245126_at AT2G47460 ATMYB12, MYB DOMAIN PROTEIN 12, MYB12, myb domain protein 12, PFG1, PRODUCTION OF FLAVONOL GLYCOSIDES 1 -0.212 0.135
139 266257_at AT2G27820 ADT3, arogenate dehydratase 3, PD1, prephenate dehydratase 1 -0.209 0.013
140 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 -0.203 0.018
141 266362_at AT2G32430 [Galactosyltransferase family protein] -0.203 -0.104
142 247522_at AT5G61340 unknown -0.203 -0.051
143 248717_at AT5G48175 unknown -0.199 0.067
144 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 -0.196 -0.041
145 247470_at AT5G62220 ATGT18, glycosyltransferase 18, GT18, glycosyltransferase 18, XLT2, Xyloglucan L-side chain galactosylTransferase position 2 -0.192 -0.002
146 264144_at AT1G79320 AtMC6, metacaspase 6, AtMCP2c, metacaspase 2c, MC6, metacaspase 6, MCP2c, metacaspase 2c -0.192 -0.064
147 264574_at AT1G05300 ZIP5, zinc transporter 5 precursor -0.191 -0.128
148 263481_at AT2G04025 GLV7, GOLVEN 7, RGF3, root meristem growth factor 3 -0.190 -0.358
149 267096_at AT2G38180 [SGNH hydrolase-type esterase superfamily protein] -0.190 -0.098
150 264716_at AT1G70170 MMP, matrix metalloproteinase -0.189 0.072
151 253382_at AT4G33040 [Thioredoxin superfamily protein] -0.185 0.072
152 245431_at AT4G17080 [Histone H3 K4-specific methyltransferase SET7/9 family protein] -0.185 -0.004
153 265144_at AT1G51170 AGC2-3, AGC2 kinase 3, UCN, UNICORN -0.184 0.085
154 263412_at AT2G28720 [Histone superfamily protein] -0.184 0.016
155 266828_at AT2G22930 [UDP-Glycosyltransferase superfamily protein] -0.184 -0.039
156 257105_at AT3G15300 [VQ motif-containing protein] -0.181 -0.027
157 265728_at AT2G31990 [Exostosin family protein] -0.181 0.032
158 252594_at AT3G45680 [Major facilitator superfamily protein] -0.178 0.029
159 257260_at AT3G22104 [Phototropic-responsive NPH3 family protein] -0.176 0.043
160 259734_at AT1G77500 unknown -0.175 0.043
161 248701_at AT5G48410 ATGLR1.3, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 1.3, GLR1.3, glutamate receptor 1.3 -0.171 0.051
162 247753_at AT5G59070 [UDP-Glycosyltransferase superfamily protein] -0.170 0.050
163 265031_at AT1G61590 [Protein kinase superfamily protein] -0.168 -0.092
164 252076_at AT3G51660 [Tautomerase/MIF superfamily protein] -0.167 -0.040
165 253022_at AT4G38060 CCI2, Clavata complex interactor 2 -0.164 0.008
166 264405_at AT1G10210 ATMPK1, mitogen-activated protein kinase 1, MPK1, mitogen-activated protein kinase 1 -0.163 0.063
167 254175_at AT4G24050 [NAD(P)-binding Rossmann-fold superfamily protein] -0.162 0.033
168 260635_at AT1G62422 unknown -0.161 0.246
169 264901_at AT1G23090 AST91, sulfate transporter 91, SULTR3;3 -0.161 -0.025
170 253296_at AT4G33770 ITPK2, inositol 1,3,4-trisphosphate 5/6 kinase 2 -0.159 0.013
171 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] -0.159 -0.383
172 261610_at AT1G49560 [Homeodomain-like superfamily protein] -0.159 -0.028
173 251291_at AT3G61900 SAUR33, SMALL AUXIN UPREGULATED RNA 33 -0.156 0.046
174 254689_at AT4G13710 [Pectin lyase-like superfamily protein] -0.153 -0.120
175 266156_at AT2G28110 FRA8, FRAGILE FIBER 8, IRX7, IRREGULAR XYLEM 7 -0.153 0.032
176 261777_at AT1G76210 unknown -0.152 -0.016
177 254490_at AT4G20320 [CTP synthase family protein] -0.152 -0.227
178 249284_at AT5G41810 unknown -0.150 -0.021
179 264305_at AT1G78815 LSH7, LIGHT SENSITIVE HYPOCOTYLS 7 -0.150 0.010
180 262170_at AT1G74940 unknown -0.148 0.015
181 255285_at AT4G04630 unknown -0.148 0.052
182 261550_at AT1G63450 RHS8, root hair specific 8, XUT1, XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1 -0.148 -0.160
183 246205_at AT4G36970 [Remorin family protein] -0.147 -0.023
184 251174_at AT3G63200 PLA IIIB, PLP9, PATATIN-like protein 9 -0.146 0.026
185 261025_at AT1G01225 [NC domain-containing protein-related] -0.144 -0.052
186 249334_at AT5G41000 AtYSL4, YSL4, YELLOW STRIPE like 4 -0.143 -0.170
187 256621_at AT3G24450 [Heavy metal transport/detoxification superfamily protein ] -0.142 0.008