4.0:Information of module
ap1-1 cal-1 35S:AGGR +DEX 1d
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0048440 carpel development BP 1.641e-10
GO:0048467 gynoecium development BP 3.061e-10
GO:0048438 floral whorl development BP 5.716e-09
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009733 response to auxin BP 2.362e-04
GO:0009719 response to endogenous stimulus BP 7.441e-04
GO:0005992 trehalose biosynthetic process BP 4.038e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ap1-1 cal-1 35S:AGGR +DEX 1d		 Log2 signal ratio
Leafminer damaged seedlings
1 251898_at AT3G54340 AP3, APETALA 3, ATAP3 0.829 0.049
2 260355_at AT1G69180 CRC, CRABS CLAW 0.736 0.020
3 257579_at AT3G11000 [DCD (Development and Cell Death) domain protein] 0.554 0.020
4 264872_at AT1G24260 AGL9, AGAMOUS-like 9, SEP3, SEPALLATA3 0.416 -0.008
5 254595_at AT4G18960 AG, AGAMOUS 0.413 -0.021
6 262436_at AT1G47610 [Transducin/WD40 repeat-like superfamily protein] 0.396 -0.015
7 254391_at AT4G21590 ENDO3, endonuclease 3 0.387 0.001
8 256569_at AT3G19550 unknown 0.385 0.577
9 253411_at AT4G32980 ATH1, homeobox gene 1 0.373 -0.578
10 247875_at AT5G57720 [AP2/B3-like transcriptional factor family protein] 0.301 -0.019
11 262793_at AT1G13110 CYP71B7, cytochrome P450, family 71 subfamily B, polypeptide 7 0.266 0.051
12 255768_at AT1G16705 [p300/CBP acetyltransferase-related protein-related] 0.253 0.008
13 261768_at AT1G15550 ATGA3OX1, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, GA3OX1, gibberellin 3-oxidase 1, GA4, GA REQUIRING 4 0.248 -0.257
14 246072_at AT5G20240 PI, PISTILLATA 0.240 0.060
15 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 0.237 -0.040
16 259386_at AT1G13400 JGL, JAGGED-LIKE, NUB, NUBBIN 0.227 -0.008
17 259089_at AT3G04960 unknown 0.227 -0.159
18 256062_at AT1G07090 LSH6, LIGHT SENSITIVE HYPOCOTYLS 6 0.223 0.169
19 254574_at AT4G19430 unknown 0.201 -0.848
20 246158_at AT5G19855 AtRbcX2, RbcX2, homologue of cyanobacterial RbcX 2 0.197 -0.029
21 256175_at AT1G51670 unknown 0.192 0.006
22 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 0.192 0.581
23 255427_at AT4G03380 unknown 0.183 0.004
24 251394_at AT3G60900 FLA10, FASCICLIN-like arabinogalactan-protein 10 0.183 -0.030
25 251555_at AT3G58780 AGL1, AGAMOUS-like 1, SHP1, SHATTERPROOF 1 0.183 -0.060
26 263306_at AT2G12480 SCPL43, serine carboxypeptidase-like 43 0.183 -0.052
27 257271_at AT3G28007 AtSWEET4, SWEET4 0.183 0.605
28 259042_at AT3G03450 RGL2, RGA-like 2 0.182 -0.341
29 246082_at AT5G20480 EFR, EF-TU receptor 0.178 0.346
30 263073_at AT2G17500 [Auxin efflux carrier family protein] 0.176 0.435
31 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.175 0.405
32 253684_at AT4G29690 [Alkaline-phosphatase-like family protein] 0.170 0.330
33 262550_at AT1G31310 [hydroxyproline-rich glycoprotein family protein] 0.160 0.037
34 261929_at AT1G22460 [O-fucosyltransferase family protein] 0.158 0.018
35 259569_at AT1G20480 [AMP-dependent synthetase and ligase family protein] 0.157 -0.013
36 260735_at AT1G17610 CHS1, CHILLING SENSITIVE 1 0.154 -0.271
37 266540_at AT2G35310 [Transcriptional factor B3 family protein] 0.154 0.046
38 260883_at AT1G29270 unknown -0.309 -0.047
39 246279_at AT4G36740 ATHB40, homeobox protein 40, HB-5, HB40, homeobox protein 40 -0.276 0.019
40 251636_at AT3G57530 ATCPK32, CDPK32, CPK32, calcium-dependent protein kinase 32 -0.256 0.125
41 252896_at AT4G39480 CYP96A9, cytochrome P450, family 96, subfamily A, polypeptide 9 -0.250 0.002
42 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] -0.240 0.114
43 260693_at AT1G32450 AtNPF7.3, NPF7.3, NRT1/ PTR family 7.3, NRT1.5, nitrate transporter 1.5 -0.232 -0.147
44 251090_at AT5G01340 AtmSFC1, mSFC1, mitochondrial succinate-fumarate carrier 1 -0.211 -0.242
45 246137_at AT5G28490 LSH1, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, OBO2, ORGAN BOUNDARY 2 -0.208 0.010
46 266123_at AT2G45180 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.205 -0.149
47 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] -0.203 0.065
48 255521_at AT4G02280 ATSUS3, SUS3, sucrose synthase 3 -0.200 0.119
49 267075_at AT2G41070 ATBZIP12, DPBF4, EEL, ENHANCED EM LEVEL -0.199 -0.061
50 263680_at AT1G26930 [Galactose oxidase/kelch repeat superfamily protein] -0.197 0.609
51 260470_at AT1G11125 unknown -0.195 -0.011
52 245165_at AT2G33180 unknown -0.193 -0.204
53 263808_at AT2G04340 unknown -0.190 0.018
54 263452_at AT2G22190 TPPE, trehalose-6-phosphate phosphatase E -0.188 -0.000
55 259596_at AT1G28130 GH3.17 -0.187 -0.044
56 254397_at AT4G21690 ATGA3OX3, ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, GA3OX3, gibberellin 3-oxidase 3 -0.187 0.055
57 250481_at AT5G10310 unknown -0.186 -0.140
58 264054_at AT2G22540 AGL22, AGAMOUS-like 22, FAQ1, Flowering Arabidopsis QTL1, SVP, SHORT VEGETATIVE PHASE -0.186 -0.029
59 256319_at AT1G35910 TPPD, trehalose-6-phosphate phosphatase D -0.185 -0.001
60 259956_at AT1G75110 RRA2, REDUCED RESIDUAL ARABINOSE 2 -0.181 -0.082
61 254024_at AT4G25780 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.181 -0.279
62 259539_at AT1G20550 [O-fucosyltransferase family protein] -0.179 -0.053
63 251940_at AT3G53450 LOG4, LONELY GUY 4 -0.178 0.078
64 255787_at AT2G33590 AtCRL1, CRL1, CCR(Cinnamoyl coA:NADP oxidoreductase)-like 1 -0.173 0.005
65 257186_at AT3G13130 unknown -0.171 0.001
66 260012_at AT1G67865 unknown -0.170 0.169
67 259126_at AT3G02280 AtTAH18, TAH18 -0.161 -0.059
68 262568_at AT1G34290 AtRLP5, receptor like protein 5, RLP5, receptor like protein 5 -0.161 -0.013
69 259705_at AT1G77450 anac032, NAC domain containing protein 32, NAC032, NAC domain containing protein 32 -0.160 0.512
70 252054_at AT3G52540 ATOFP18, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18, OFP18, ovate family protein 18 -0.157 0.018
71 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 -0.156 0.183
72 265964_at AT2G37510 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.150 -0.078
73 249116_at AT5G43822 [Pentatricopeptide repeat (PPR) superfamily protein] -0.150 -0.085