4.0:Information of module
middle flower buds J10B
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006412 translation BP 6.719e-15
GO:0010467 gene expression BP 6.739e-11
GO:0001510 RNA methylation BP 1.560e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 2.099e-08
GO:0042221 response to chemical BP 2.396e-08
GO:0010038 response to metal ion BP 3.318e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
middle flower buds J10B		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 244969_at ATCG00650 RPS18, ribosomal protein S18 0.898 -0.222
2 253627_at AT4G30650 [Low temperature and salt responsive protein family] 0.592 0.150
3 261244_at AT1G20150 [Subtilisin-like serine endopeptidase family protein] 0.559 -0.759
4 252912_at AT4G39200 [Ribosomal protein S25 family protein] 0.506 1.378
5 254962_at AT4G11050 AtGH9C3, glycosyl hydrolase 9C3, GH9C3, glycosyl hydrolase 9C3 0.482 -0.928
6 245886_at AT5G09510 [Ribosomal protein S19 family protein] 0.472 1.097
7 244935_at ATCG01090 NDHI 0.471 0.401
8 247208_at AT5G64870 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 0.467 -0.275
9 264848_at AT2G17350 unknown 0.463 0.324
10 262236_at AT1G48330 unknown 0.439 0.692
11 264023_at AT2G21195 unknown 0.431 0.210
12 246479_at AT5G16060 [Cytochrome c oxidase biogenesis protein Cmc1-like] 0.418 0.913
13 265966_at AT2G37220 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.414 0.178
14 262293_at AT1G27640 unknown 0.393 -0.160
15 261128_at AT1G04860 ATUBP2, UBP2, ubiquitin-specific protease 2 0.378 -0.125
16 253566_at AT4G31210 [DNA topoisomerase, type IA, core] 0.370 0.352
17 252076_at AT3G51660 [Tautomerase/MIF superfamily protein] 0.370 -1.015
18 244965_at ATCG00590 ORF31 0.370 -1.108
19 247433_at AT5G62540 UBC3, ubiquitin-conjugating enzyme 3 0.367 0.332
20 261717_at AT1G18400 BEE1, BR enhanced expression 1 0.362 -0.819
21 246457_at AT5G16750 TOZ, TORMOZEMBRYO DEFECTIVE 0.354 0.944
22 246004_at AT5G20630 ATGER3, ARABIDOPSIS THALIANA GERMIN 3, GER3, germin 3, GLP3, GERMIN-LIKE PROTEIN 3, GLP3A, GLP3B 0.353 0.739
23 248350_at AT5G52160 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.341 -0.944
24 266499_at AT2G06980 [pseudogene] 0.334 -1.227
25 252297_at AT3G48930 EMB1080, embryo defective 1080 0.334 0.459
26 249786_at AT5G24310 ABIL3, ABL interactor-like protein 3 0.327 0.556
27 247424_at AT5G62850 AtSWEET5, AtVEX1, VEGETATIVE CELL EXPRESSED1, SWEET5 0.322 -0.501
28 261833_at AT1G10670 ACLA-1, ATP-citrate lyase A-1 0.319 0.701
29 252566_at AT3G46040 RPS15AD, ribosomal protein S15A D 0.316 0.588
30 245279_at AT4G17270 [Mo25 family protein] 0.316 0.059
31 262784_at AT1G10760 GWD, GWD1, SEX1, STARCH EXCESS 1, SOP, SOP1 0.310 0.588
32 258223_at AT3G15840 PIFI, post-illumination chlorophyll fluorescence increase 0.308 0.038
33 252051_at AT3G52570 [alpha/beta-Hydrolases superfamily protein] 0.301 0.450
34 260154_at AT1G52740 HTA9, histone H2A protein 9 0.296 1.109
35 244934_at ATCG01080 NDHG 0.296 -0.581
36 256327_at AT3G02350 GAUT9, galacturonosyltransferase 9 0.293 1.409
37 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.289 -0.707
38 256011_at AT1G19230 [Riboflavin synthase-like superfamily protein] 0.285 -0.932
39 246351_at AT1G16570 [UDP-Glycosyltransferase superfamily protein] 0.284 0.320
40 260353_at AT1G69230 SP1L2, SPIRAL1-like2 0.282 0.281
41 259210_at AT3G09150 ATHY2, ARABIDOPSIS ELONGATED HYPOCOTYL 2, GUN3, GENOMES UNCOUPLED 3, HY2, ELONGATED HYPOCOTYL 2 0.281 0.355
42 244966_at ATCG00600 PETG 0.280 -0.656
43 254355_at AT4G22380 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.276 0.580
44 267088_at AT2G38140 PSRP4, plastid-specific ribosomal protein 4 0.273 0.452
45 247439_at AT5G62670 AHA11, H(+)-ATPase 11, HA11, H(+)-ATPase 11 0.272 0.702
46 263134_at AT1G78570 ATRHM1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, RHM1, rhamnose biosynthesis 1, ROL1, REPRESSOR OF LRX1 1 0.270 0.779
47 251796_at AT3G55360 ATTSC13, CER10, ECERIFERUM 10, ECR, ENOYL-COA REDUCTASE, TSC13 0.269 0.054
48 245600_at AT4G14230 unknown 0.269 0.362
49 247847_at AT5G58110 [chaperone binding] 0.267 1.417
50 254535_at AT4G19710 AK-HSDH, ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE, AK-HSDH II, aspartate kinase-homoserine dehydrogenase ii 0.266 0.619
51 245291_at AT4G16155 [dihydrolipoyl dehydrogenases] 0.262 -0.016
52 262676_at AT1G75950 ASK1, ARABIDOPSIS SKP1 HOMOLOGUE 1, ATSKP1, SKP1, S phase kinase-associated protein 1, SKP1A, UIP1, UFO INTERACTING PROTEIN 1 0.261 1.487
53 245700_at AT5G04180 ACA3, alpha carbonic anhydrase 3, ATACA3, ALPHA CARBONIC ANHYDRASE 3 0.255 -0.125
54 259639_at AT1G52380 [NUP50 (Nucleoporin 50 kDa) protein] 0.252 0.431
55 254301_at AT4G22790 [MATE efflux family protein] 0.247 -1.202
56 254928_at AT4G11410 [NAD(P)-binding Rossmann-fold superfamily protein] 0.246 -0.355
57 248742_at AT5G48200 unknown 0.245 -0.665
58 263609_at AT2G16250 [Leucine-rich repeat protein kinase family protein] 0.244 -0.308
59 259380_at AT3G16340 ABCG29, ATP-binding cassette G29, AtABCG29, ATPDR1, PLEIOTROPIC DRUG RESISTANCE 1, PDR1, pleiotropic drug resistance 1 0.241 -0.164
60 253421_at AT4G32340 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.241 0.306
61 254384_at AT4G21870 [HSP20-like chaperones superfamily protein] 0.240 0.769
62 244962_at ATCG01050 NDHD 0.240 -0.821
63 247281_at AT5G64350 ATFKBP12, ARABIDOPSIS THALIANA FK506-BINDING PROTEIN 12, FKBP12, FK506-binding protein 12, FKP12, FK506-binding protein 12 0.239 0.956
64 249094_at AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 -0.583 -0.801
65 266927_at AT2G45960 ATHH2, PIP1;2, NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1;2, PIP1B, plasma membrane intrinsic protein 1B, TMP-A, TRANSMEMBRANE PROTEIN A -0.413 1.272
66 251962_at AT3G53420 AtPIP2;1, PIP2, PLASMA MEMBRANE INTRINSIC PROTEIN 2, PIP2;1, PLASMA MEMBRANE INTRINSIC PROTEIN 2;1, PIP2A, plasma membrane intrinsic protein 2A -0.410 0.596
67 246595_at AT5G14780 FDH, formate dehydrogenase -0.365 -0.342
68 252897_at AT4G39490 CYP96A10, cytochrome P450, family 96, subfamily A, polypeptide 10 -0.354 0.068
69 266174_at AT2G02440 unknown -0.348 -0.276
70 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.338 0.251
71 261410_at AT1G07610 MT1C, metallothionein 1C -0.336 1.341
72 263433_at AT2G22240 ATIPS2, INOSITOL 3-PHOSPHATE SYNTHASE 2, ATMIPS2, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2, MIPS2, myo-inositol-1-phosphate synthase 2 -0.332 -0.548
73 261581_at AT1G01140 CIPK9, CBL-interacting protein kinase 9, PKS6, PROTEIN KINASE 6, SnRK3.12, SNF1-RELATED PROTEIN KINASE 3.12 -0.328 0.324
74 250126_at AT5G16310 UCH1 -0.325 0.534
75 251258_at AT3G62170 VGDH2, VANGUARD 1 homolog 2 -0.320 0.250
76 266983_at AT2G39400 [alpha/beta-Hydrolases superfamily protein] -0.314 0.301
77 255605_at AT4G01090 unknown -0.310 0.663
78 263151_at AT1G54120 unknown -0.309 -0.287
79 252863_at AT4G39800 ATIPS1, INOSITOL 3-PHOSPHATE SYNTHASE 1, ATMIPS1, MYO-INOSITOL-1-PHOSPHATE SYNTHASE 1, MI-1-P SYNTHASE, MIPS1, D-myo-Inositol 3-Phosphate Synthase 1, MIPS1, myo-inositol-1-phosphate synthase 1 -0.299 0.698
80 265582_at AT2G20030 [RING/U-box superfamily protein] -0.294 -0.751
81 245992_at AT5G20690 PRK6, pollen receptor like kinase 6 -0.293 -0.475
82 254239_at AT4G23400 PIP1;5, plasma membrane intrinsic protein 1;5, PIP1D -0.273 0.067
83 263443_at AT2G28630 KCS12, 3-ketoacyl-CoA synthase 12 -0.269 -0.944
84 252250_at AT3G49790 [Carbohydrate-binding protein] -0.263 0.158
85 260788_at AT1G06260 [Cysteine proteinases superfamily protein] -0.262 -1.018
86 255806_at AT4G10260 [pfkB-like carbohydrate kinase family protein] -0.261 -0.016
87 258140_at AT3G24503 ALDH1A, aldehyde dehydrogenase 1A, ALDH2C4, aldehyde dehydrogenase 2C4, REF1, REDUCED EPIDERMAL FLUORESCENCE1 -0.261 0.614
88 249085_at AT5G44170 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.259 -0.150
89 254188_at AT4G23920 ATUGE2, UDP-GLC 4-EPIMERASE 2, UGE2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 -0.256 0.346
90 253863_at AT4G27420 ABCG9, ATP-binding cassette G9 -0.253 -0.367
91 251324_at AT3G61430 ATPIP1, ARABIDOPSIS THALIANA PLASMA MEMBRANE INTRINSIC PROTEIN 1, PIP1, PLASMA MEMBRANE INTRINSIC PROTEIN 1, PIP1;1, PLASMA MEMBRANE INTRINSIC PROTEIN 1;1, PIP1A, plasma membrane intrinsic protein 1A -0.245 0.761
92 256225_at AT1G56220 [Dormancy/auxin associated family protein] -0.243 0.216
93 265627_at AT2G27285 [Coiled-coil domain-containing protein 55 (DUF2040)] -0.239 -0.127
94 253547_at AT4G30950 FAD6, fatty acid desaturase 6, FADC, FATTY ACID DESATURASE C, SFD4, STEAROYL DESATURASE DEFICIENCY 4 -0.238 0.646
95 253956_at AT4G26700 ATFIM1, ARABIDOPSIS THALIANA FIMBRIN 1, FIM1, fimbrin 1 -0.237 0.407
96 250972_at AT5G02840 LCL1, LHY/CCA1-like 1 -0.234 0.089
97 260481_at AT1G10960 ATFD1, ferredoxin 1, FD1, ferredoxin 1 -0.230 0.580
98 266244_at AT2G27740 unknown -0.228 0.048
99 265547_at AT2G28305 ATLOG1, LOG1, LONELY GUY 1 -0.228 -0.163
100 267377_at AT2G26250 FDH, FIDDLEHEAD, KCS10, 3-ketoacyl-CoA synthase 10 -0.228 0.740
101 263689_at AT1G26820 RNS3, ribonuclease 3 -0.227 0.073
102 261272_at AT1G26665 [Mediator complex, subunit Med10] -0.227 0.532
103 259983_at AT1G76490 AtHMGR1, HMG1, hydroxy methylglutaryl CoA reductase 1, HMGR1, 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, MAD3, miRNA action deficient 3 -0.226 0.266
104 255889_at AT1G17840 ABCG11, ATP-binding cassette G11, AtABCG11, ATWBC11, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, COF1, CUTICULAR DEFECT AND ORGAN FUSION 1, DSO, DESPERADO, WBC11, white-brown complex homolog protein 11 -0.222 0.947
105 251358_at AT3G61160 [Protein kinase superfamily protein] -0.221 0.931
106 245936_at AT5G19850 [alpha/beta-Hydrolases superfamily protein] -0.219 -0.138
107 255764_at AT1G16720 HCF173, high chlorophyll fluorescence phenotype 173 -0.218 0.270
108 250180_at AT5G14450 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.215 1.802
109 258727_at AT3G11930 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.215 0.725
110 245951_at AT5G19550 AAT2, ASPARTATE AMINOTRANSFERASE 2, ASP2, aspartate aminotransferase 2 -0.214 0.340
111 265035_at AT1G61620 [phosphoinositide binding] -0.214 0.981
112 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like -0.214 0.107
113 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.210 0.557
114 249558_at AT5G38310 unknown -0.210 -0.449
115 258690_at AT3G07960 PIP5K6, phosphatidylinositol-4-phosphate 5-kinase 6 -0.209 -0.784
116 245732_at AT1G73440 [calmodulin-related] -0.209 -0.111
117 262949_at AT1G75790 sks18, SKU5 similar 18 -0.207 -0.660
118 257216_at AT3G14990 AtDJ1A, DJ-1 homolog A, DJ-1a, DJ1A, DJ-1 homolog A -0.204 -0.020
119 247178_at AT5G65205 [NAD(P)-binding Rossmann-fold superfamily protein] -0.203 1.007
120 256245_at AT3G12580 ATHSP70, ARABIDOPSIS HEAT SHOCK PROTEIN 70, HSP70, heat shock protein 70 -0.203 1.584
121 257651_at AT3G16850 [Pectin lyase-like superfamily protein] -0.199 0.873
122 254110_at AT4G25260 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.199 -0.208
123 253372_at AT4G33220 ATPME44, A. THALIANA PECTIN METHYLESTERASE 44, PME44, pectin methylesterase 44 -0.193 1.374
124 245483_at AT4G16190 [Papain family cysteine protease] -0.192 0.100
125 251443_at AT3G59940 KFB50, Kelch repeat F-box 50, KMD4, KISS ME DEADLY 4 -0.190 0.043