4.0:Information of module
sav3-2 shade
In comparison with empty vector IAA Treated help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0045087 innate immune response BP 2.124e-09
GO:0006955 immune response BP 2.469e-09
GO:0002376 immune system process BP 6.504e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009733 response to auxin BP 2.553e-16
GO:0009719 response to endogenous stimulus BP 9.074e-15
GO:0050896 response to stimulus BP 1.317e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
sav3-2 shade		 Log2 signal ratio
empty vector IAA Treated
1 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 0.741 0.021
2 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 0.740 0.065
3 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.720 0.021
4 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.672 -0.279
5 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 0.495 -0.091
6 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.485 -0.077
7 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) 0.425 0.030
8 259352_at AT3G05170 [Phosphoglycerate mutase family protein] 0.394 -0.011
9 261339_at AT1G35710 [Protein kinase family protein with leucine-rich repeat domain] 0.383 -0.108
10 258537_at AT3G04210 [Disease resistance protein (TIR-NBS class)] 0.312 -0.059
11 261221_at AT1G19960 unknown 0.304 0.016
12 249893_at AT5G22555 unknown 0.261 -0.093
13 267076_at AT2G41090 [Calcium-binding EF-hand family protein] 0.255 -0.014
14 249094_at AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 0.249 0.047
15 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.248 0.055
16 245074_at AT2G23200 [Protein kinase superfamily protein] 0.245 0.030
17 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 0.245 -0.081
18 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.242 -0.057
19 248062_at AT5G55450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.238 -0.040
20 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] 0.238 0.046
21 265611_at AT2G25510 unknown 0.223 -0.008
22 259129_at AT3G02150 PTF1, plastid transcription factor 1, TCP13, TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, TFPD 0.216 -0.163
23 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] 0.215 -0.310
24 260419_at AT1G69730 [Wall-associated kinase family protein] 0.212 -0.013
25 255148_at AT4G08470 MAPKKK10, MEKK3, MAPK/ERK kinase kinase 3 0.209 -0.143
26 263800_at AT2G24600 [Ankyrin repeat family protein] 0.202 0.006
27 257646_at AT3G25740 MAP1B, methionine aminopeptidase 1C, MAP1C, METHIONINE AMINOPEPTIDASE 1C 0.195 0.045
28 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.192 -0.018
29 252170_at AT3G50480 HR4, homolog of RPW8 4 0.184 -0.122
30 254112_at AT4G24970 [Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein] 0.181 0.085
31 253696_at AT4G29740 ATCKX4, CKX4, cytokinin oxidase 4 0.181 0.058
32 262508_at AT1G11300 [protein serine/threonine kinases] 0.177 -0.098
33 248270_at AT5G53450 ORG1, OBP3-responsive gene 1 0.177 -0.062
34 252427_at AT3G47640 PYE, POPEYE 0.161 -0.050
35 249754_at AT5G24530 DMR6, DOWNY MILDEW RESISTANT 6 0.158 0.034
36 245227_s_at AT1G08410 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.153 -0.049
37 255503_at AT4G02420 LecRK-IV.4, L-type lectin receptor kinase IV.4 0.149 0.162
38 262507_at AT1G11330 [S-locus lectin protein kinase family protein] 0.146 0.073
39 254289_at AT4G22980 unknown 0.138 0.198
40 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 0.134 0.010
41 253993_at AT4G26070 ATMEK1, MEK1, MAP kinase/ ERK kinase 1, MKK1, MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, NMAPKK 0.133 0.029
42 267084_at AT2G41180 SIB2, sigma factor binding protein 2 0.133 -0.049
43 264901_at AT1G23090 AST91, sulfate transporter 91, SULTR3;3 0.127 0.010
44 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 0.123 -0.009
45 251569_at AT3G58290 [TRAF-like superfamily protein] 0.123 0.013
46 254639_at AT4G18750 DOT4, DEFECTIVELY ORGANIZED TRIBUTARIES 4 0.123 0.018
47 249032_at AT5G44910 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.123 -0.169
48 254758_at AT4G13260 AtYUC2, YUC2, YUCCA2 0.121 -0.086
49 262286_at AT1G68585 unknown 0.120 0.090
50 255852_at AT1G66970 GDPDL1, Glycerophosphodiester phosphodiesterase (GDPD) like 1, SVL2, SHV3-like 2 0.119 -0.087
51 261598_at AT1G49750 [Leucine-rich repeat (LRR) family protein] 0.116 -0.019
52 251792_at AT3G55550 LecRK-S.4, L-type lectin receptor kinase S.4 0.116 -0.042
53 260152_at AT1G52830 IAA6, indole-3-acetic acid 6, SHY1, SHORT HYPOCOTYL 1 -0.735 -0.107
54 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 -0.636 0.627
55 259332_at AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 -0.596 0.170
56 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 -0.564 -0.083
57 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 -0.554 -0.073
58 266830_at AT2G22810 ACC4, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, ACS4, 1-aminocyclopropane-1-carboxylate synthase 4, ATACS4 -0.515 -0.014
59 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] -0.503 0.024
60 265806_at AT2G18010 SAUR10, SMALL AUXIN UPREGULATED RNA 10 -0.498 -0.150
61 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 -0.451 0.637
62 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.445 0.087
63 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 -0.439 0.002
64 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.412 -0.027
65 264100_at AT1G78970 ATLUP1, ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, LUP1, lupeol synthase 1 -0.397 -0.127
66 247474_at AT5G62280 unknown -0.390 0.081
67 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 -0.382 0.309
68 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 -0.378 0.184
69 256743_at AT3G29370 P1R3, P1R3 -0.366 0.033
70 251178_at AT3G63440 ATCKX6, CYTOKININ OXIDASE 6, ATCKX7, CKX6, cytokinin oxidase/dehydrogenase 6 -0.364 0.104
71 245076_at AT2G23170 GH3.3 -0.351 0.854
72 257900_at AT3G28420 [Putative membrane lipoprotein] -0.337 -0.045
73 248801_at AT5G47370 HAT2 -0.335 0.649
74 252765_at AT3G42800 unknown -0.330 -0.044
75 254685_at AT4G13790 SAUR25, SMALL AUXIN UPREGULATED RNA 25 -0.317 0.114
76 259785_at AT1G29490 SAUR68, SMALL AUXIN UPREGULATED 68 -0.316 0.037
77 252970_at AT4G38850 ATSAUR15, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-AC1, ARABIDOPSIS COLUMBIA SAUR GENE 1, SAUR15, SMALL AUXIN UPREGULATED 15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA -0.301 -0.058
78 252204_at AT3G50340 unknown -0.298 0.063
79 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.297 -0.008
80 256464_at AT1G32560 AtLEA4-1, Late Embryogenesis Abundant 4-1, LEA4-1, Late Embryogenesis Abundant 4-1 -0.297 -0.058
81 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.296 -0.068
82 249306_at AT5G41400 [RING/U-box superfamily protein] -0.296 -0.038
83 250868_at AT5G03860 MLS, malate synthase -0.294 -0.020
84 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 -0.294 0.035
85 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 -0.292 0.023
86 249053_at AT5G44440 [FAD-binding Berberine family protein] -0.283 -0.015
87 264598_at AT1G04610 YUC3, YUCCA 3 -0.278 0.056
88 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 -0.259 -0.089
89 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.255 -0.092
90 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.246 0.071
91 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 -0.236 0.045
92 247159_at AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 -0.236 0.068
93 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] -0.228 -0.002
94 250396_at AT5G10970 [C2H2 and C2HC zinc fingers superfamily protein] -0.224 -0.006
95 255028_at AT4G09890 unknown -0.219 0.114
96 257642_at AT3G25710 ATAIG1, BHLH32, basic helix-loop-helix 32, TMO5, TARGET OF MONOPTEROS 5 -0.218 0.044
97 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 -0.209 0.090
98 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -0.202 -0.103
99 264016_at AT2G21220 SAUR12, SMALL AUXIN UPREGULATED RNA 12 -0.202 -0.040
100 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.201 0.058
101 258907_at AT3G06370 ATNHX4, NHX4, sodium hydrogen exchanger 4 -0.201 0.006
102 262373_at AT1G73120 unknown -0.199 -0.032
103 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 -0.194 0.016