4.0:Information of module
sav1-1 shade
In comparison with cat2-2; 8h switch to ambient CO2 concentrations; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 1.656e-15
GO:0010033 response to organic substance BP 7.503e-13
GO:0042221 response to chemical BP 5.113e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0008361 regulation of cell size BP 9.019e-05
GO:0010817 regulation of hormone levels BP 1.227e-04
GO:0009825 multidimensional cell growth BP 1.492e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
sav1-1 shade		 Log2 signal ratio
cat2-2; 8h switch to ambient CO2 concentrations;
1 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 0.431 -0.059
2 259352_at AT3G05170 [Phosphoglycerate mutase family protein] 0.431 0.007
3 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.347 -0.004
4 261648_at AT1G27730 STZ, salt tolerance zinc finger, ZAT10 0.342 0.045
5 248164_at AT5G54490 PBP1, pinoid-binding protein 1 0.331 -0.009
6 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 0.304 -0.019
7 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 0.301 -0.037
8 246652_at AT5G35190 EXT13, extensin 13 0.287 -0.051
9 252238_at AT3G49960 [Peroxidase superfamily protein] 0.277 -0.003
10 250801_at AT5G04960 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.264 -0.021
11 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.252 0.019
12 261006_at AT1G26410 [FAD-binding Berberine family protein] 0.245 0.230
13 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.237 -0.006
14 253830_at AT4G27652 unknown 0.236 -0.050
15 256522_at AT1G66160 ATCMPG1, CMPG1, CYS, MET, PRO, and GLY protein 1 0.221 0.072
16 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 0.220 -0.108
17 260015_at AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase 0.218 0.124
18 249893_at AT5G22555 unknown 0.214 -0.032
19 264774_at AT1G22890 unknown 0.200 -0.036
20 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 0.194 0.046
21 257460_at AT1G75580 SAUR51, SMALL AUXIN UPREGULATED RNA 51 0.183 -0.079
22 258765_at AT3G10710 RHS12, root hair specific 12 0.178 0.011
23 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 0.177 -0.009
24 249454_at AT5G39520 unknown 0.176 0.114
25 252319_at AT3G48710 [DEK domain-containing chromatin associated protein] 0.170 0.163
26 245076_at AT2G23170 GH3.3 0.169 0.031
27 252822_at AT4G39955 [alpha/beta-Hydrolases superfamily protein] 0.165 0.000
28 261606_at AT1G49570 [Peroxidase superfamily protein] 0.165 -0.032
29 261475_at AT1G14550 [Peroxidase superfamily protein] 0.158 -0.004
30 245041_at AT2G26530 AR781 0.158 0.033
31 246842_at AT5G26731 unknown 0.154 -0.016
32 266276_at AT2G29330 TRI, tropinone reductase 0.153 -0.082
33 247190_at AT5G65420 CYCD4;1, CYCLIN D4;1 0.140 -0.051
34 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] 0.138 -0.003
35 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 0.135 -0.024
36 261099_at AT1G62980 ATEXP18, ATEXPA18, expansin A18, ATHEXP ALPHA 1.25, EXP18, EXPANSIN 18, EXPA18, expansin A18 0.134 -0.015
37 247491_at AT5G61880 [Protein Transporter, Pam16] 0.129 -0.029
38 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 0.126 0.080
39 264505_at AT1G09380 UMAMIT25, Usually multiple acids move in and out Transporters 25 0.126 -0.008
40 254773_at AT4G13410 ATCSLA15, CSLA15, CELLULOSE SYNTHASE LIKE A15 0.121 0.036
41 256337_at AT1G72060 [serine-type endopeptidase inhibitors] 0.119 -0.040
42 265186_at AT1G23560 unknown 0.119 0.053
43 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 0.117 0.040
44 253915_at AT4G27280 [Calcium-binding EF-hand family protein] 0.117 -0.063
45 254384_at AT4G21870 [HSP20-like chaperones superfamily protein] 0.117 -0.075
46 263016_at AT1G23410 [Ribosomal protein S27a / Ubiquitin family protein] 0.116 -0.120
47 247326_at AT5G64110 [Peroxidase superfamily protein] 0.114 0.104
48 250287_at AT5G13330 Rap2.6L, related to AP2 6l 0.114 0.130
49 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.656 0.357
50 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] -0.558 0.248
51 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -0.414 0.009
52 266393_at AT2G41260 ATM17, M17 -0.404 -0.021
53 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.331 0.059
54 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.325 -0.014
55 266830_at AT2G22810 ACC4, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, ACS4, 1-aminocyclopropane-1-carboxylate synthase 4, ATACS4 -0.300 -0.066
56 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 -0.294 0.151
57 249053_at AT5G44440 [FAD-binding Berberine family protein] -0.278 -0.058
58 245326_at AT4G14100 [transferases, transferring glycosyl groups] -0.261 -0.066
59 249869_at AT5G23050 AAE17, acyl-activating enzyme 17 -0.243 0.021
60 251838_at AT3G54940 [Papain family cysteine protease] -0.239 0.021
61 253720_at AT4G29270 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.227 -0.272
62 253155_at AT4G35720 unknown -0.219 -0.019
63 263133_at AT1G78450 [SOUL heme-binding family protein] -0.214 -0.126
64 250396_at AT5G10970 [C2H2 and C2HC zinc fingers superfamily protein] -0.211 -0.013
65 261819_at AT1G11410 [S-locus lectin protein kinase family protein] -0.209 0.067
66 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.206 -0.083
67 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B -0.196 0.076
68 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 -0.196 0.021
69 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] -0.187 -0.162
70 249774_at AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 -0.174 -0.009
71 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 -0.165 -0.075
72 245903_at AT5G11100 ATSYTD, NTMC2T2.2, NTMC2TYPE2.2, SYT4, synaptotagmin 4, SYTD -0.163 -0.018
73 252160_at AT3G50570 [hydroxyproline-rich glycoprotein family protein] -0.162 -0.011
74 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 -0.160 -0.123
75 254573_at AT4G19420 [Pectinacetylesterase family protein] -0.157 -0.022
76 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 -0.155 -0.003
77 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.151 -0.198
78 247159_at AT5G65800 ACS5, ACC synthase 5, ATACS5, CIN5, CYTOKININ-INSENSITIVE 5, ETO2, ETHYLENE OVERPRODUCER 2 -0.150 0.005
79 264606_at AT1G04660 [glycine-rich protein] -0.149 -0.023
80 255149_at AT4G08150 BP, BREVIPEDICELLUS, BP1, BREVIPEDICELLUS 1, KNAT1, KNOTTED-like from Arabidopsis thaliana -0.147 -0.025
81 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] -0.143 -0.108
82 263120_at AT1G78490 CYP708A3, cytochrome P450, family 708, subfamily A, polypeptide 3 -0.142 0.031
83 246260_at AT1G31820 PUT1, POLYAMINE UPTAKE TRANSPORTER 1 -0.139 -0.025
84 266330_at AT2G01530 MLP329, MLP-like protein 329, ZCE2, (Zusammen-CA)-enhanced 2 -0.134 0.008
85 244937_at ATCG01110 NDHH, NAD(P)H dehydrogenase subunit H -0.133 -0.021
86 255854_at AT1G67050 unknown -0.133 -0.139
87 251713_at AT3G56080 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.132 -0.058
88 255246_at AT4G05640 unknown -0.129 0.020
89 261339_at AT1G35710 [Protein kinase family protein with leucine-rich repeat domain] -0.129 0.197
90 249432_at AT5G39930 CLPS5, CLP1-similar protein 5 -0.128 -0.054
91 254609_at AT4G18970 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.127 -0.096
92 263765_at AT2G21540 ATSFH3, SEC14-LIKE 3, SFH3, SEC14-like 3 -0.126 0.042
93 262304_at AT1G70890 MLP43, MLP-like protein 43 -0.126 -0.016
94 263734_at AT1G60030 ATNAT7, ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, NAT7, nucleobase-ascorbate transporter 7 -0.126 -0.041
95 247425_at AT5G62550 unknown -0.124 0.083