4.0:Information of module
Col-0 shade
In comparison with aerial organ callus inducing medium 12 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 2.176e-27
GO:0009733 response to auxin BP 3.364e-23
GO:0009725 response to hormone BP 2.042e-20
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009812 flavonoid metabolic process BP 1.004e-05
GO:0009813 flavonoid biosynthetic process BP 1.183e-05
GO:0016310 phosphorylation BP 1.357e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 shade		 Log2 signal ratio
aerial organ callus inducing medium 12 h
1 260152_at AT1G52830 IAA6, indole-3-acetic acid 6, SHY1, SHORT HYPOCOTYL 1 0.824 0.038
2 264323_at AT1G04180 YUC9, YUCCA 9 0.747 -0.093
3 253066_at AT4G37770 ACS8, 1-amino-cyclopropane-1-carboxylate synthase 8 0.737 0.716
4 259332_at AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 0.734 -0.038
5 253794_at AT4G28720 YUC8, YUCCA 8 0.713 0.284
6 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 0.701 0.486
7 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.675 1.021
8 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 0.611 0.088
9 261109_at AT1G75450 ATCKX5, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, ATCKX6, CYTOKININ OXIDASE 6, CKX5, cytokinin oxidase 5 0.597 0.511
10 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 0.579 0.132
11 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 0.558 0.336
12 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 0.555 -0.200
13 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 0.555 0.254
14 266814_at AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 0.542 -0.135
15 265806_at AT2G18010 SAUR10, SMALL AUXIN UPREGULATED RNA 10 0.529 0.434
16 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 0.510 0.181
17 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 0.486 0.004
18 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 0.479 0.226
19 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 0.470 -0.190
20 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 0.469 0.310
21 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.464 -0.180
22 261717_at AT1G18400 BEE1, BR enhanced expression 1 0.460 0.216
23 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 0.454 0.291
24 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 0.446 0.285
25 259834_at AT1G69570 [Dof-type zinc finger DNA-binding family protein] 0.445 -0.149
26 256743_at AT3G29370 P1R3, P1R3 0.445 0.499
27 266830_at AT2G22810 ACC4, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, ACS4, 1-aminocyclopropane-1-carboxylate synthase 4, ATACS4 0.442 0.003
28 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.438 0.051
29 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 0.429 0.260
30 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 0.427 0.398
31 251026_at AT5G02200 FHL, far-red-elongated hypocotyl1-like 0.425 0.303
32 245696_at AT5G04190 PKS4, phytochrome kinase substrate 4 0.412 0.217
33 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.411 -0.470
34 255568_at AT4G01250 AtWRKY22, WRKY22 0.410 0.220
35 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 0.404 0.035
36 251178_at AT3G63440 ATCKX6, CYTOKININ OXIDASE 6, ATCKX7, CKX6, cytokinin oxidase/dehydrogenase 6 0.398 0.057
37 252204_at AT3G50340 unknown 0.394 0.097
38 257900_at AT3G28420 [Putative membrane lipoprotein] 0.392 -0.214
39 248888_at AT5G46240 AtKAT1, KAT1, potassium channel in Arabidopsis thaliana 1 0.387 -0.240
40 253915_at AT4G27280 [Calcium-binding EF-hand family protein] 0.380 -0.054
41 248801_at AT5G47370 HAT2 0.363 0.165
42 245076_at AT2G23170 GH3.3 0.360 0.764
43 252661_at AT3G44450 unknown -0.340 -0.356
44 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 -0.290 0.002
45 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -0.264 -0.655
46 249309_at AT5G41410 BEL1, BELL 1 -0.252 0.004
47 252010_at AT3G52740 unknown -0.211 -0.363
48 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 -0.196 -0.380
49 260081_at AT1G78170 unknown -0.195 -0.111
50 245758_at AT1G32240 KAN2, KANADI 2 -0.188 -0.260
51 256168_at AT1G51805 [Leucine-rich repeat protein kinase family protein] -0.187 -0.261
52 254572_at AT4G19380 [Long-chain fatty alcohol dehydrogenase family protein] -0.173 -0.615
53 258919_at AT3G10525 LGO, LOSS OF GIANT CELLS FROM ORGANS, SMR1, SIAMESE RELATED 1 -0.167 -0.066
54 252619_at AT3G45210 unknown -0.158 -0.263
55 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 -0.153 0.002
56 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 -0.153 0.081
57 246986_at AT5G67280 RLK, receptor-like kinase -0.150 -0.074
58 262170_at AT1G74940 unknown -0.147 0.079
59 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 -0.145 -0.191
60 257272_at AT3G28130 UMAMIT44, Usually multiple acids move in and out Transporters 44 -0.139 -0.101
61 257260_at AT3G22104 [Phototropic-responsive NPH3 family protein] -0.132 -0.050
62 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] -0.122 -0.133
63 265894_at AT2G15050 LTP, lipid transfer protein, LTP7, lipid transfer protein 7 -0.122 -0.066
64 253084_at AT4G36260 SRS2, SHI RELATED SEQUENCE 2, STY2, STYLISH 2 -0.122 -0.009
65 263739_at AT2G21320 BBX18, B-box domain protein 18 -0.121 -0.770
66 267305_at AT2G30070 ATKT1, potassium transporter 1, ATKT1P, ATKUP1, KT1, potassium transporter 1, KUP1, POTASSIUM UPTAKE TRANSPORTER 1 -0.120 -0.104
67 261407_at AT1G18810 [phytochrome kinase substrate-related] -0.115 -0.540
68 254119_at AT4G24780 [Pectin lyase-like superfamily protein] -0.115 -0.171
69 265309_at AT2G20290 ATXIG, MYOSIN XI G, XIG, myosin-like protein XIG -0.115 -0.099
70 261016_at AT1G26560 BGLU40, beta glucosidase 40 -0.114 -0.325
71 250167_at AT5G15310 ATMIXTA, ATMYB16, myb domain protein 16, MYB16, myb domain protein 16 -0.114 -0.247
72 257719_at AT3G18440 ALMT9, aluminum-activated malate transporter 9, AtALMT9, aluminum-activated malate transporter 9 -0.106 0.148
73 254639_at AT4G18750 DOT4, DEFECTIVELY ORGANIZED TRIBUTARIES 4 -0.105 -0.103
74 262827_at AT1G13100 CYP71B29, cytochrome P450, family 71, subfamily B, polypeptide 29 -0.105 -0.026
75 267451_at AT2G33710 [Integrase-type DNA-binding superfamily protein] -0.103 0.276
76 258935_at AT3G10120 unknown -0.102 0.155
77 259656_at AT1G55200 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.101 -0.155
78 267165_at AT2G37710 LecRK-IV.1, L-type lectin receptor kinase IV.1, RLK, receptor lectin kinase -0.100 -0.001
79 262598_at AT1G15260 unknown -0.099 -0.239
80 261139_at AT1G19700 BEL10, BEL1-like homeodomain 10, BLH10, BEL1-LIKE HOMEODOMAIN 10 -0.098 -0.348
81 249551_at AT5G38220 [alpha/beta-Hydrolases superfamily protein] -0.097 0.006
82 255502_at AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 -0.097 -0.061
83 263128_at AT1G78600 BBX22, B-box domain protein 22, DBB3, DOUBLE B-BOX 3, LZF1, light-regulated zinc finger protein 1, STH3, SALT TOLERANCE HOMOLOG 3 -0.097 0.384