4.0:Information of module
cry1 low light
In comparison with seedlings by volatiles from leafminer damaged Lima bean 48h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010162 seed dormancy process BP 1.360e-05
GO:0022611 dormancy process BP 1.360e-05
GO:0010431 seed maturation BP 6.252e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009812 flavonoid metabolic process BP 1.171e-06
GO:0009813 flavonoid biosynthetic process BP 1.311e-06
GO:0009695 jasmonic acid biosynthetic process BP 4.153e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cry1 low light		 Log2 signal ratio
seedlings by volatiles from leafminer damaged Lima bean 48h
1 253767_at AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 0.884 -0.009
2 257947_at AT3G21720 ICL, isocitrate lyase 0.303 -0.045
3 247474_at AT5G62280 unknown 0.276 -0.008
4 250013_at AT5G18040 unknown 0.268 0.030
5 255048_at AT4G09600 GASA3, GAST1 protein homolog 3 0.267 0.009
6 253689_at AT4G29770 unknown 0.266 0.083
7 264734_at AT1G62280 SLAH1, SLAC1 homologue 1 0.264 -0.010
8 247643_at AT5G60450 ARF4, auxin response factor 4 0.263 -0.012
9 259578_at AT1G27990 unknown 0.246 0.050
10 246299_at AT3G51810 AT3, ATEM1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, EM1, LATE EMBRYOGENESIS ABUNDANT 1, GEA1, GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1 0.233 -0.016
11 250327_at AT5G12050 unknown 0.228 -0.244
12 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 0.226 -0.256
13 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] 0.199 -0.018
14 262388_at AT1G49320 unknown 0.174 -0.085
15 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 0.169 -0.186
16 267452_at AT2G33860 ARF3, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, ETT, ETTIN 0.165 -0.029
17 257994_at AT3G19920 unknown 0.164 -0.022
18 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) 0.160 0.102
19 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 0.159 0.044
20 254743_at AT4G13420 ATHAK5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, HAK5, high affinity K+ transporter 5 0.159 0.296
21 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 0.154 -0.051
22 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 0.149 -0.081
23 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 0.140 0.123
24 253723_at AT4G29240 [Leucine-rich repeat (LRR) family protein] 0.133 -0.007
25 256454_at AT1G75280 [NmrA-like negative transcriptional regulator family protein] -1.256 0.116
26 256453_at AT1G75270 DHAR2, dehydroascorbate reductase 2 -1.108 0.187
27 255068_at AT4G08920 ATCRY1, BLU1, BLUE LIGHT UNINHIBITED 1, CRY1, cryptochrome 1, HY4, ELONGATED HYPOCOTYL 4, OOP2, OUT OF PHASE 2 -0.987 -0.147
28 256452_at AT1G75240 AtHB33, homeobox protein 33, HB33, homeobox protein 33, ZHD5, zinc-finger homeodomain 5 -0.746 -0.030
29 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 -0.487 0.048
30 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 -0.412 0.176
31 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 -0.383 0.134
32 256509_at AT1G75300 [NmrA-like negative transcriptional regulator family protein] -0.309 0.329
33 265510_at AT2G05630 ATG8D -0.294 0.026
34 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 -0.235 0.060
35 256710_at AT3G30350 GLV3, GOLVEN 3, RGF4, root meristem growth factor 4 -0.229 0.028
36 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] -0.203 0.392
37 265569_at AT2G05620 AtPGR5, PGR5, proton gradient regulation 5 -0.189 -0.098
38 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A -0.177 0.053
39 247459_at AT5G62200 [Embryo-specific protein 3, (ATS3)] -0.170 0.087
40 258982_at AT3G08870 LecRK-VI.1, L-type lectin receptor kinase VI.1 -0.138 0.030
41 247577_at AT5G61290 [Flavin-binding monooxygenase family protein] -0.131 -0.046
42 266561_at AT2G23960 [Class I glutamine amidotransferase-like superfamily protein] -0.127 -0.016
43 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -0.125 0.315
44 261012_at AT1G26600 CLE9, CLAVATA3/ESR-RELATED 9 -0.117 -0.037
45 257034_at AT3G19184 [AP2/B3-like transcriptional factor family protein] -0.116 -0.018
46 245460_at AT4G16990 RLM3, RESISTANCE TO LEPTOSPHAERIA MACULANS 3 -0.114 -0.078
47 252733_at AT3G43120 SAUR39, SMALL AUXIN UPREGULATED RNA 39 -0.112 -0.061