4.0:Information of module
SAM L-AOPP
In comparison with siliques AtHb1 control help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0016052 carbohydrate catabolic process BP 1.069e-03
GO:0006497 protein lipidation BP 1.240e-03
GO:0042158 lipoprotein biosynthetic process BP 1.240e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042127 regulation of cell proliferation BP 1.397e-03
GO:0001101 response to acid chemical BP 1.626e-03
GO:0071229 cellular response to acid chemical BP 1.992e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
SAM L-AOPP		 Log2 signal ratio
siliques AtHb1 control
1 252792_at AT3G42240 unknown 0.418 0.017
2 260268_at AT1G68490 unknown 0.409 0.037
3 254427_at AT4G21190 emb1417, embryo defective 1417 0.389 0.020
4 266753_at AT2G46990 IAA20, indole-3-acetic acid inducible 20 0.388 -0.026
5 246965_at AT5G24840 [tRNA (guanine-N-7) methyltransferase] 0.350 0.020
6 248789_at AT5G47440 unknown 0.292 -0.037
7 258423_at AT3G16730 HEB2, hypersensitive to excess boron 2 0.285 0.046
8 256254_at AT3G11290 unknown 0.274 0.010
9 246020_at AT5G10710 [INVOLVED IN: chromosome segregation, cell division] 0.273 0.094
10 262982_at AT1G54390 ING2, INHIBITOR OF GROWTH 2 0.272 -0.134
11 262921_at AT1G79430 APL, ALTERED PHLOEM DEVELOPMENT, WDY, WOODY 0.263 -0.084
12 256548_at AT3G14770 AtSWEET2, SWEET2 0.252 -0.084
13 253618_at AT4G30420 UMAMIT34, Usually multiple acids move in and out Transporters 34 0.248 -0.061
14 249727_at AT5G35490 ATMRU1, ARABIDOPSIS MTO 1 RESPONDING UP 1, MRU1, MTO 1 RESPONDING UP 1 0.247 0.104
15 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] 0.242 0.567
16 263642_at AT2G04750 [Actin binding Calponin homology (CH) domain-containing protein] 0.241 0.034
17 264632_at AT1G65640 DEG4, degradation of periplasmic proteins 4, DegP4, DegP protease 4 0.239 -0.035
18 259307_at AT3G05230 [Signal peptidase subunit] 0.235 0.005
19 252876_at AT4G39970 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.232 0.031
20 261102_at AT1G62880 [Cornichon family protein] 0.226 -0.066
21 262553_at AT1G31360 ATRECQ2, ARABIDOPSIS THALIANA RECQ 2, MED34, RECQL2, RECQ helicase L2 0.225 0.065
22 256912_at AT3G23850 unknown 0.224 0.011
23 267368_at AT2G44350 ATCS, CSY4, CITRATE SYNTHASE 4 0.217 -0.033
24 248432_at AT5G51390 unknown 0.208 0.102
25 249505_at AT5G38870 [pseudogene] 0.207 -0.062
26 266638_at AT2G35490 [Plastid-lipid associated protein PAP / fibrillin family protein] 0.207 -0.006
27 259711_at AT1G77570 AtREN1, REN1, restricted to nucleolus 1 0.205 -0.109
28 250439_at AT5G10450 14-3-3lambda, 14-3-3 PROTEIN G-BOX FACTOR14 LAMBDA, AFT1, GRF6, G-box regulating factor 6 0.203 -0.015
29 247686_at AT5G59700 [Protein kinase superfamily protein] 0.202 0.084
30 267254_at AT2G23030 SNRK2-9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNRK2.9, SNF1-related protein kinase 2.9 0.201 -0.049
31 266618_at AT2G35480 unknown 0.199 0.058
32 262696_at AT1G75870 unknown 0.198 -0.021
33 258282_at AT3G26910 [hydroxyproline-rich glycoprotein family protein] 0.198 0.083
34 248042_at AT5G55960 unknown 0.186 -0.153
35 264643_at AT1G08990 GUX5, Glucuronic Acid Substitution of Xylan 5, PGSIP5, plant glycogenin-like starch initiation protein 5 0.186 0.006
36 264890_at AT1G23180 [ARM repeat superfamily protein] 0.185 -0.025
37 254574_at AT4G19430 unknown 0.184 -0.160
38 255048_at AT4G09600 GASA3, GAST1 protein homolog 3 0.182 0.385
39 260538_at AT2G43460 [Ribosomal L38e protein family] 0.182 -0.018
40 254400_at AT4G21270 ATK1, kinesin 1, KATA, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, KATAP, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN 0.181 0.091
41 259124_at AT3G02310 AGL4, AGAMOUS-like 4, SEP2, SEPALLATA 2 0.179 -0.026
42 259889_at AT1G76405 unknown 0.178 -0.016
43 247575_at AT5G61030 GR-RBP3, glycine-rich RNA-binding protein 3 0.178 -0.070
44 261279_at AT1G05850 ATCTL1, CTL1, CHITINASE-LIKE PROTEIN 1, ELP, ECTOPIC DEPOSITION OF LIGNIN IN PITH, ELP1, ECTOPIC DEPOSITION OF LIGNIN IN PITH 1, ERH2, ECTOPIC ROOT HAIR 2, HOT2, SENSITIVE TO HOT TEMPERATURES 2, POM1, POM-POM1 0.175 -0.094
45 247870_at AT5G57580 [Calmodulin-binding protein] 0.174 0.001
46 253477_at AT4G32320 APX6, ascorbate peroxidase 6 0.173 -0.104
47 259528_at AT1G12330 unknown 0.171 -0.037
48 248072_at AT5G55680 [glycine-rich protein] 0.169 -0.016
49 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 0.169 0.127
50 262373_at AT1G73120 unknown 0.167 0.168
51 257830_at AT3G26690 ATNUDT13, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, ATNUDX13, nudix hydrolase homolog 13, NUDX13, nudix hydrolase homolog 13 0.165 0.187
52 250784_at AT5G05480 [Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein] 0.165 0.107
53 262648_at AT1G14030 LSMT-L, lysine methyltransferase (LSMT)-like 0.165 0.018
54 256922_at AT3G19010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.164 0.116
55 250085_at AT5G17250 [Alkaline-phosphatase-like family protein] 0.163 -0.019
56 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 0.162 -0.188
57 260092_at AT1G73280 scpl3, serine carboxypeptidase-like 3 0.158 -0.017
58 259272_at AT3G01290 AtHIR2, HIR2, hypersensitive induced reaction 2 0.157 0.634
59 248952_at AT5G45410 unknown 0.154 -0.101
60 245175_at AT2G47470 ATPDI11, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, ATPDIL2-1, PDI-LIKE 2-1, MEE30, MATERNAL EFFECT EMBRYO ARREST 30, PDI11, PROTEIN DISULFIDE ISOMERASE 11, UNE5, UNFERTILIZED EMBRYO SAC 5 0.152 -0.013
61 261016_at AT1G26560 BGLU40, beta glucosidase 40 0.150 -0.040
62 248479_at AT5G50910 unknown 0.149 0.003
63 260201_at AT1G67600 [Acid phosphatase/vanadium-dependent haloperoxidase-related protein] 0.149 -0.045
64 245594_at AT4G14570 AARE, acylamino acid-releasing enzyme, AtAARE 0.149 -0.154
65 264442_at AT1G27480 [alpha/beta-Hydrolases superfamily protein] 0.148 -0.163
66 256920_at AT3G18980 ETP1, EIN2 targeting protein1 0.147 -0.036
67 246450_at AT5G16820 ATHSF3, ARABIDOPSIS HEAT SHOCK FACTOR 3, ATHSFA1B, ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, HSF3, heat shock factor 3, HSFA1B, CLASS A HEAT SHOCK FACTOR 1B 0.147 0.063
68 258612_at AT3G02920 ATRPA32B, RPA32B 0.146 -0.068
69 259189_at AT3G01700 AGP11, arabinogalactan protein 11, ATAGP11, ARABINOGALACTAN PROTEIN 11 0.146 -0.392
70 264633_at AT1G65660 SMP1, SWELLMAP 1 0.144 0.134
71 257996_at AT3G19950 [RING/U-box superfamily protein] 0.143 -0.026
72 260141_at AT1G66350 RGL, RGL1, RGA-like 1 0.141 -0.004
73 264306_at AT1G78890 unknown 0.141 -0.042
74 246548_at AT5G14910 [Heavy metal transport/detoxification superfamily protein ] 0.141 -0.016
75 245430_at AT4G17060 FIP2, FRIGIDA interacting protein 2 0.140 0.046
76 245283_at AT4G13980 AT-HSFA5, HSFA5, HEAT SHOCK TRANSCRIPTION FACTOR A5 0.139 0.025
77 259018_at AT3G07390 AIR12, Auxin-Induced in Root cultures 12 0.137 -0.136
78 251739_at AT3G56170 CAN, Ca-2+ dependent nuclease, CAN1, calcium dependent nuclease 1 0.136 -0.027
79 263527_at AT2G24810 [Pathogenesis-related thaumatin superfamily protein] 0.135 -0.038
80 247438_at AT5G62460 [RING/FYVE/PHD zinc finger superfamily protein] 0.134 -0.116
81 262388_at AT1G49320 unknown 0.134 0.032
82 248705_at AT5G48520 AtAUG3, AUG3, augmin 3 0.134 0.024
83 262568_at AT1G34290 AtRLP5, receptor like protein 5, RLP5, receptor like protein 5 0.134 -0.029
84 262109_at AT1G02730 ATCSLD5, cellulose synthase-like D5, CSLD5, CELLULOSE SYNTHASE LIKE D5, CSLD5, cellulose synthase-like D5, SOS6, SALT OVERLY SENSITIVE 6 -0.532 0.052
85 245723_at AT1G73400 [Pentatricopeptide repeat (PPR) superfamily protein] -0.402 -0.022
86 263363_at AT2G03850 [Late embryogenesis abundant protein (LEA) family protein] -0.344 0.173
87 250969_at AT5G02740 [Ribosomal protein S24e family protein] -0.324 -0.076
88 245527_at AT4G15955 [alpha/beta-Hydrolases superfamily protein] -0.295 -0.161
89 256820_at AT3G22170 CPD45, CHLOROPLAST DIVISION MUTANT 45, FHY3, far-red elongated hypocotyls 3 -0.277 0.052
90 248250_at AT5G53130 ATCNGC1, CYCLIC NUCLEOTIDE-GATED CHANNEL 1, CNGC1, cyclic nucleotide gated channel 1 -0.261 0.013
91 259714_at AT1G60980 ATGA20OX4, gibberellin 20-oxidase 4, GA20OX4, gibberellin 20-oxidase 4 -0.256 -0.060
92 266153_at AT2G12320 unknown -0.248 -0.039
93 248370_at AT5G52170 HDG7, homeodomain GLABROUS 7 -0.248 0.071
94 259713_at AT1G77610 [EamA-like transporter family protein] -0.243 -0.215
95 251010_at AT5G02550 unknown -0.242 0.105
96 252595_at AT3G45690 [Major facilitator superfamily protein] -0.221 -0.018
97 256323_at AT1G54920 unknown -0.213 -0.229
98 257995_at AT3G19940 [Major facilitator superfamily protein] -0.211 -0.093
99 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 -0.209 -0.105
100 246039_at AT5G19480 unknown -0.203 0.051
101 258120_at AT3G14730 [Pentatricopeptide repeat (PPR) superfamily protein] -0.199 0.017
102 247565_at AT5G61150 VIP4, VERNALIZATION INDEPENDENCE 4 -0.196 0.173
103 251022_at AT5G02150 Fes1C, Fes1C -0.196 0.106
104 252431_at AT3G47700 MAG2, maigo2 -0.192 0.031
105 258619_at AT3G02780 IDI2, ATISOPENTENYL DIPHOSPHE ISOMERASE 2, IPIAT1, IPP2, isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 -0.187 0.041
106 250358_at AT5G11740 AGP15, arabinogalactan protein 15, ATAGP15 -0.187 -0.113
107 260161_at AT1G79860 ATROPGEF12, MEE64, MATERNAL EFFECT EMBRYO ARREST 64, ROPGEF12, ROP (rho of plants) guanine nucleotide exchange factor 12 -0.186 -0.121
108 261526_at AT1G14370 APK2A, protein kinase 2A, Kin1, kinase 1, PBL2, PBS1-like 2 -0.186 0.192
109 245302_at AT4G17695 KAN3, KANADI 3 -0.183 -0.052
110 250143_at AT5G14670 ARFA1B, ADP-ribosylation factor A1B, ATARFA1B, ADP-ribosylation factor A1B -0.182 -0.103
111 253203_at AT4G34710 ADC2, arginine decarboxylase 2, ATADC2, SPE2 -0.182 0.098
112 260178_at AT1G70720 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.179 -0.031
113 257562_at AT3G30480 unknown -0.177 -0.040
114 248199_at AT5G54170 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.175 -0.039
115 252762_at AT3G42780 unknown -0.175 -0.022
116 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 -0.173 0.089
117 254254_at AT4G23330 unknown -0.173 -0.054
118 265250_at AT2G01950 BRL2, BRI1-like 2, VH1, VASCULAR HIGHWAY 1 -0.172 -0.013
119 251858_at AT3G54820 PIP2;5, plasma membrane intrinsic protein 2;5, PIP2D, PLASMA MEMBRANE INTRINSIC PROTEIN 2D -0.171 -0.075
120 251341_at AT3G60770 [Ribosomal protein S13/S15] -0.171 -0.033
121 253743_at AT4G28940 [Phosphorylase superfamily protein] -0.171 -0.020
122 252541_at AT3G45750 [Nucleotidyltransferase family protein] -0.170 -0.037
123 258839_at AT3G07170 [Sterile alpha motif (SAM) domain-containing protein] -0.170 0.009
124 261524_at AT1G14300 [ARM repeat superfamily protein] -0.168 -0.191
125 262142_at AT1G52640 [Pentatricopeptide repeat (PPR) superfamily protein] -0.166 -0.005
126 257361_at AT2G07740 [similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1)] -0.164 -0.019
127 249251_at AT5G42000 [ORMDL family protein] -0.163 -0.210
128 257258_at AT3G22040 unknown -0.161 -0.011
129 261222_at AT1G20120 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.160 -0.068
130 257087_at AT3G20500 ATPAP18, PURPLE ACID PHOSPHATASE 18, PAP18, purple acid phosphatase 18 -0.159 0.001
131 254782_at AT4G12860 UNE14, unfertilized embryo sac 14 -0.159 -0.041
132 246064_at AT5G19350 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.156 0.127
133 250607_at AT5G07370 ATIPK2A, INOSITOL POLYPHOSPHATE KINASE 2 ALPHA, IMPK, inositol multi-phosphate kinase, IPK2a, inositol polyphosphate kinase 2 alpha -0.156 0.032
134 266197_at AT2G39120 WTF9, what's this factor 9 -0.153 0.072
135 262885_at AT1G64740 TUA1, alpha-1 tubulin -0.149 -0.040
136 248914_at AT5G45750 AtRABA1c, RAB GTPase homolog A1C, RABA1c, RAB GTPase homolog A1C -0.149 0.037
137 264501_at AT1G09390 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.148 -0.029
138 245092_at AT2G40950 BZIP17 -0.148 0.019
139 260472_at AT1G10990 unknown -0.147 -0.029
140 261250_at AT1G05890 ARI5, ARIADNE 5, ATARI5, ARABIDOPSIS ARIADNE 5 -0.145 0.040
141 252264_at AT3G49590 ATG13, autophagy-related 13 -0.144 0.063
142 259780_at AT1G29630 [5'-3' exonuclease family protein] -0.141 -0.070
143 248354_at AT5G52330 [TRAF-like superfamily protein] -0.139 0.026
144 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 -0.139 -0.125
145 260427_at AT1G72430 SAUR78, SMALL AUXIN UPREGULATED RNA 78 -0.137 -0.003
146 261999_at AT1G33800 AtGXMT1, GXM1, glucuronoxylan methyltransferase 1, GXMT1, glucuronoxylan methyltransferase 1 -0.137 -0.200
147 260067_at AT1G73780 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.136 0.087
148 263589_at AT2G25280 unknown -0.134 -0.051
149 261241_at AT1G32950 [Subtilase family protein] -0.132 -0.004
150 261162_at AT1G34440 unknown -0.131 -0.018
151 246907_at AT5G25510 [Protein phosphatase 2A regulatory B subunit family protein] -0.130 -0.059
152 256113_at AT1G16810 unknown -0.130 0.035
153 253863_at AT4G27420 ABCG9, ATP-binding cassette G9 -0.129 0.004
154 252142_at AT3G51120 [DNA binding] -0.128 0.161
155 249990_at AT5G18540 unknown -0.128 0.187
156 250081_at AT5G17180 unknown -0.127 -0.004
157 262674_at AT1G75910 EXL4, extracellular lipase 4 -0.127 -0.099
158 251444_at AT3G59990 MAP2B, methionine aminopeptidase 2B -0.127 -0.055
159 247481_at AT5G62400 unknown -0.125 -0.013
160 246303_at AT3G51870 [Mitochondrial substrate carrier family protein] -0.125 -0.073
161 261763_at AT1G15520 ABCG40, ATP-binding cassette G40, ATABCG40, Arabidopsis thaliana ATP-binding cassette G40, ATPDR12, PLEIOTROPIC DRUG RESISTANCE 12, PDR12, pleiotropic drug resistance 12 -0.123 0.159
162 245142_at AT2G45270 GCP1, glycoprotease 1 -0.122 0.014
163 254726_at AT4G13660 ATPRR2, PRR2, pinoresinol reductase 2 -0.122 -0.023
164 257855_at AT3G13040 [myb-like HTH transcriptional regulator family protein] -0.122 0.092
165 246028_at AT5G21170 5'-AMP-activated protein kinase beta-2 subunit protein -0.121 0.038