4.0:Information of module
Var2-1 roots 2hr KNO3 nitrogen
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0002679 respiratory burst involved in defense re... BP 6.623e-07
GO:0045730 respiratory burst BP 6.623e-07
GO:0010243 response to organonitrogen compound BP 3.352e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0055114 oxidation-reduction process BP 3.790e-07
GO:0033037 polysaccharide localization BP 1.101e-06
GO:0052545 callose localization BP 4.422e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Var2-1 roots 2hr KNO3 nitrogen		 Log2 signal ratio
Leafminer damaged seedlings
1 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 1.324 0.955
2 266292_at AT2G29350 SAG13, senescence-associated gene 13 1.114 0.836
3 248736_at AT5G48110 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 1.105 0.039
4 248122_at AT5G54700 [Ankyrin repeat family protein] 1.062 -0.013
5 262421_at AT1G50290 unknown 1.055 -0.009
6 244973_at ATCG00690 PSBT, photosystem II reaction center protein T, PSBTC 0.991 -0.074
7 244994_at ATCG01010 NDHF 0.956 -0.052
8 246406_at AT1G57650 [ATP binding] 0.922 0.114
9 252234_at AT3G49780 ATPSK3 (FORMER SYMBOL), ATPSK4, phytosulfokine 4 precursor, PSK4, phytosulfokine 4 precursor 0.919 0.627
10 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 0.912 0.797
11 257168_at AT3G24430 HCF101, HIGH-CHLOROPHYLL-FLUORESCENCE 101 0.910 -0.213
12 263769_at AT2G06390 transposable element gene 0.902 -0.045
13 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 0.889 -0.094
14 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.875 0.597
15 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] 0.875 0.500
16 244965_at ATCG00590 ORF31 0.842 -0.056
17 244933_at ATCG01070 NDHE 0.839 -0.051
18 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 0.829 0.052
19 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 0.823 0.156
20 245135_at AT2G45230 [non-LTR retrotransposon family (LINE), has a 3.9e-46 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)] 0.803 -0.041
21 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.796 0.048
22 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 0.776 0.414
23 260092_at AT1G73280 scpl3, serine carboxypeptidase-like 3 0.756 -0.061
24 256442_at AT3G10930 unknown 0.735 0.757
25 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 0.735 0.518
26 244934_at ATCG01080 NDHG 0.730 -0.080
27 259441_at AT1G02300 [Cysteine proteinases superfamily protein] 0.721 0.091
28 260287_at AT1G80440 KFB20, Kelch repeat F-box 20, KMD1, KISS ME DEADLY 1 0.709 0.073
29 265483_at AT2G15790 CYP40, CYCLOPHILIN 40, SQN, SQUINT 0.707 -0.156
30 253281_at AT4G34138 UGT73B1, UDP-glucosyl transferase 73B1 0.673 0.245
31 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 0.666 0.184
32 257354_x_at AT2G23480 unknown 0.658 0.005
33 250135_at AT5G15360 unknown 0.656 -0.011
34 249495_at AT5G39100 GLP6, germin-like protein 6 0.656 -0.020
35 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] 0.650 -0.132
36 261474_at AT1G14540 PER4, peroxidase 4 0.624 0.476
37 252691_at AT3G44050 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.613 -0.085
38 264482_at AT1G77210 AtSTP14, sugar transport protein 14, STP14, sugar transport protein 14 0.613 0.190
39 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.595 0.090
40 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 0.591 0.773
41 244997_at ATCG00170 RPOC2 0.587 -0.174
42 255893_at AT1G17960 [Threonyl-tRNA synthetase] 0.584 0.053
43 247145_at AT5G65600 LecRK-IX.2, L-type lectin receptor kinase IX.2 0.581 0.611
44 254596_at AT4G18975 [Pentatricopeptide repeat (PPR) superfamily protein] 0.580 -0.016
45 255753_at AT1G18570 AtMYB51, myb domain protein 51, BW51A, BW51B, HIG1, HIGH INDOLIC GLUCOSINOLATE 1, MYB51, myb domain protein 51 0.569 0.361
46 244970_at ATCG00660 RPL20, ribosomal protein L20 0.569 -0.026
47 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 0.564 0.685
48 253597_at AT4G30690 [Translation initiation factor 3 protein] 0.562 0.033
49 248622_at AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 0.559 0.058
50 258606_at AT3G02840 [ARM repeat superfamily protein] 0.559 0.864
51 254231_at AT4G23810 ATWRKY53, WRKY53 0.557 0.667
52 254976_at AT4G10510 [Subtilase family protein] 0.553 -0.004
53 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.550 0.210
54 244903_at ATMG00660 ORF149 0.550 0.075
55 260975_at AT1G53430 [Leucine-rich repeat transmembrane protein kinase] 0.540 0.212
56 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 0.538 -0.025
57 244983_at ATCG00790 RPL16, ribosomal protein L16 0.535 -0.070
58 244921_s_at ATMG01000 ORF114 0.529 0.135
59 256965_at AT3G13450 DIN4, DARK INDUCIBLE 4 0.525 0.097
60 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.525 -0.049
61 244932_at ATCG01060 PSAC 0.524 -0.063
62 251317_at AT3G61490 [Pectin lyase-like superfamily protein] 0.523 0.143
63 254566_at AT4G19240 unknown 0.519 0.009
64 245082_at AT2G23270 unknown 0.514 0.172
65 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 0.514 0.767
66 252036_at AT3G52070 unknown 0.512 0.095
67 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.506 0.557
68 260239_at AT1G74360 [Leucine-rich repeat protein kinase family protein] 0.504 0.677
69 245008_at ATCG00360 YCF3 0.502 -0.213
70 256306_at AT1G30370 DLAH, DAD1-like acylhydrolase 0.502 0.140
71 244966_at ATCG00600 PETG 0.501 -0.107
72 245546_at AT4G15290 ATCSLB05, ATCSLB5, CELLULOSE SYNTHASE LIKE 5, CSLB05 0.499 -0.017
73 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.496 0.214
74 253796_at AT4G28460 unknown 0.495 0.082
75 265387_at AT2G20670 unknown 0.495 -0.242
76 262004_at AT1G64480 CBL8, calcineurin B-like protein 8 0.490 0.019
77 248539_at AT5G50130 [NAD(P)-binding Rossmann-fold superfamily protein] 0.487 -0.117
78 259977_at AT1G76590 [PLATZ transcription factor family protein] 0.481 0.701
79 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 0.479 0.251
80 255319_at AT4G04220 AtRLP46, receptor like protein 46, RLP46, receptor like protein 46 0.474 0.330
81 245737_at AT1G44160 [HSP40/DnaJ peptide-binding protein] 0.471 0.007
82 259976_at AT1G76560 CP12-3, CP12 domain-containing protein 3 0.471 0.413
83 260073_at AT1G73660 SIS8, SUGAR INSENSITIVE 8 0.466 -0.315
84 246316_at AT3G56890 [F-box associated ubiquitination effector family protein] 0.465 -0.029
85 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.458 0.011
86 247807_at AT5G58360 ATOFP3, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, OFP3, ovate family protein 3 0.458 -0.048
87 266072_at AT2G18700 ATTPS11, trehalose phosphatase/synthase 11, ATTPSB, TPS11, trehalose phosphatase/synthase 11, TPS11, TREHALOSE-6-PHOSPHATE SYNTHASE 11 0.458 0.496
88 257206_at AT3G16530 [Legume lectin family protein] 0.456 0.406
89 261558_at AT1G01770 unknown 0.455 -0.012
90 259831_at AT1G69600 ATHB29, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, ZFHD1, zinc finger homeodomain 1, ZHD11, ZINC FINGER HOMEODOMAIN 11 0.454 0.026
91 255257_at AT4G05050 UBQ11, ubiquitin 11 -1.439 0.023
92 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like -1.290 0.111
93 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] -1.231 0.008
94 248944_at AT5G45500 [RNI-like superfamily protein] -1.212 0.077
95 259346_at AT3G03910 glutamate dehydrogenase 3 -1.071 -0.287
96 267267_at AT2G02580 CYP71B9, cytochrome P450, family 71, subfamily B, polypeptide 9 -1.059 0.061
97 250142_at AT5G14650 [Pectin lyase-like superfamily protein] -1.047 -0.041
98 267572_at AT2G30660 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] -1.035 0.019
99 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] -1.024 -0.009
100 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -1.015 0.108
101 246393_at AT1G58150 unknown -1.010 -0.200
102 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] -0.993 0.050
103 263276_at AT2G14100 CYP705A13, cytochrome P450, family 705, subfamily A, polypeptide 13 -0.965 0.023
104 266307_at AT2G27000 CYP705A8, cytochrome P450, family 705, subfamily A, polypeptide 8 -0.965 -0.015
105 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 -0.953 0.262
106 261091_at AT1G07550 [Leucine-rich repeat protein kinase family protein] -0.947 -0.018
107 262517_at AT1G17180 ATGSTU25, glutathione S-transferase TAU 25, GSTU25, glutathione S-transferase TAU 25 -0.936 0.186
108 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 -0.932 -0.019
109 245258_at AT4G15340 04C11, ATPEN1, pentacyclic triterpene synthase 1, PEN1, pentacyclic triterpene synthase 1 -0.930 0.037
110 248048_at AT5G56080 ATNAS2, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, NAS2, nicotianamine synthase 2 -0.914 -0.543
111 246374_at AT1G51840 [protein kinase-related] -0.894 -0.021
112 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] -0.879 0.019
113 252458_at AT3G47210 unknown -0.836 -0.031
114 257617_at AT3G26550 [Cysteine/Histidine-rich C1 domain family protein] -0.832 -0.077
115 252196_at AT3G50200 unknown -0.831 -0.024
116 247228_at AT5G65140 TPPJ, trehalose-6-phosphate phosphatase J -0.816 0.162
117 265501_at AT2G15490 UGT73B4, UDP-glycosyltransferase 73B4 -0.809 0.417
118 263295_at AT2G14210 AGL44, AGAMOUS-like 44, ANR1, ARABIDOPSIS NITRATE REGULATED 1 -0.791 -0.022
119 247729_at AT5G59530 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.786 0.291
120 250063_at AT5G17880 CSA1, constitutive shade-avoidance1 -0.784 -0.143
121 257714_at AT3G27360 H3.1, histone 3.1 -0.782 0.043
122 247727_at AT5G59490 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.775 0.224
123 254979_at AT4G10550 [Subtilase family protein] -0.747 -0.125
124 265124_at AT1G55430 [Cysteine/Histidine-rich C1 domain family protein] -0.743 0.020
125 253101_at AT4G37430 CYP81F1, CYTOCHROME P450 MONOOXYGENASE 81F1, CYP91A2, cytochrome P450, family 91, subfamily A, polypeptide 2 -0.734 0.200
126 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 -0.734 -0.181
127 265870_at AT2G01660 PDLP6, plasmodesmata-located protein 6 -0.726 -0.203
128 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] -0.723 -0.019
129 252711_at AT3G43720 LTPG2, glycosylphosphatidylinositol-anchored lipid protein transfer 2 -0.719 -0.030
130 258560_at AT3G06020 FAF4, FANTASTIC FOUR 4 -0.718 0.226
131 248912_at AT5G45670 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.716 -0.270
132 249096_at AT5G43910 [pfkB-like carbohydrate kinase family protein] -0.714 0.063
133 248728_at AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 -0.708 -0.025
134 245226_at AT3G29970 [B12D protein] -0.704 0.029
135 255547_at AT4G01920 [Cysteine/Histidine-rich C1 domain family protein] -0.696 -0.040
136 254326_at AT4G22610 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.693 0.029
137 261879_at AT1G50520 CYP705A27, cytochrome P450, family 705, subfamily A, polypeptide 27 -0.688 -0.022
138 265530_at AT2G06050 AtOPR3, DDE1, DELAYED DEHISCENCE 1, OPR3, oxophytodienoate-reductase 3 -0.685 0.509
139 256593_at AT3G28510 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.679 0.062
140 265559_at AT2G05530 [Glycine-rich protein family] -0.672 0.043
141 247685_at AT5G59680 [Leucine-rich repeat protein kinase family protein] -0.666 -0.156
142 267336_at AT2G19310 [HSP20-like chaperones superfamily protein] -0.662 -0.313
143 266176_at AT2G02250 AtPP2-B2, phloem protein 2-B2, PP2-B2, phloem protein 2-B2 -0.661 -0.020
144 262177_at AT1G74710 ATICS1, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ICS1, ISOCHORISMATE SYNTHASE 1, SID2, SALICYLIC ACID INDUCTION DEFICIENT 2 -0.653 0.137
145 256684_at AT3G32040 [Terpenoid synthases superfamily protein] -0.648 0.083
146 253372_at AT4G33220 ATPME44, A. THALIANA PECTIN METHYLESTERASE 44, PME44, pectin methylesterase 44 -0.641 0.022
147 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 -0.635 0.345
148 254510_at AT4G20210 TPS08, terpene synthase 8 -0.633 0.019
149 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] -0.631 0.017
150 255059_at AT4G09420 [Disease resistance protein (TIR-NBS class)] -0.629 -0.071
151 245270_at AT4G14960 TUA6, Tubulin alpha-6 -0.616 -0.079
152 265290_at AT2G22590 [UDP-Glycosyltransferase superfamily protein] -0.609 -0.050
153 254743_at AT4G13420 ATHAK5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, HAK5, high affinity K+ transporter 5 -0.607 0.007
154 258059_at AT3G29035 ANAC059, Arabidopsis NAC domain containing protein 59, ATNAC3, NAC domain containing protein 3, NAC3, NAC domain containing protein 3, ORS1, ORE1 SISTER1 -0.594 0.129
155 263145_at AT1G54090 ATEXO70D2, exocyst subunit exo70 family protein D2, EXO70D2, exocyst subunit exo70 family protein D2 -0.589 0.029
156 245550_at AT4G15330 CYP705A1, cytochrome P450, family 705, subfamily A, polypeptide 1 -0.588 0.069
157 248077_at AT5G55770 [Cysteine/Histidine-rich C1 domain family protein] -0.587 -0.024
158 252004_at AT3G52780 ATPAP20, PAP20 -0.586 -0.052
159 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 -0.580 0.198
160 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 -0.579 -0.100
161 246992_at AT5G67430 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.578 -0.005
162 245553_at AT4G15370 BARS1, baruol synthase 1, PEN2, PENTACYCLIC TRITERPENE SYNTHASE 2 -0.575 0.027
163 250771_at AT5G05400 [LRR and NB-ARC domains-containing disease resistance protein] -0.570 0.016
164 251044_at AT5G02350 [Cysteine/Histidine-rich C1 domain family protein] -0.566 -0.010
165 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.560 -0.156
166 262010_at AT1G35612 [expressed protein] -0.558 -0.027
167 262376_at AT1G72970 EDA17, embryo sac development arrest 17, HTH, HOTHEAD -0.555 -0.411
168 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 -0.552 -0.055
169 245612_at AT4G14440 ATECI3, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, ECI3, DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, HCD1, 3-hydroxyacyl-CoA dehydratase 1 -0.542 -0.065
170 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -0.539 -0.017
171 264101_at AT1G79000 ATHAC1, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, ATHPCAT2, ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, HAC1, histone acetyltransferase of the CBP family 1, PCAT2, P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2 -0.534 -0.032
172 265151_at AT1G51340 [MATE efflux family protein] -0.519 -0.266
173 257112_at AT3G20120 CYP705A21, cytochrome P450, family 705, subfamily A, polypeptide 21 -0.518 -0.076
174 249245_at AT5G42280 [Cysteine/Histidine-rich C1 domain family protein] -0.516 -0.191
175 246478_at AT5G15980 [Pentatricopeptide repeat (PPR) superfamily protein] -0.515 -0.113
176 254320_at AT4G22580 [Exostosin family protein] -0.514 -0.064
177 254902_at AT4G11550 [Cysteine/Histidine-rich C1 domain family protein] -0.514 -0.107
178 256162_at AT1G55390 [Cysteine/Histidine-rich C1 domain family protein] -0.512 -0.017
179 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.511 0.068