4.0:Information of module
SQ8 roots 2hr KNO3 nitrogen
In comparison with seed germinating in countinuous light 48 h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 3.087e-14
GO:0010243 response to organonitrogen compound BP 7.374e-14
GO:1901698 response to nitrogen compound BP 1.090e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 1.515e-04
GO:0048443 stamen development BP 6.412e-04
GO:0048466 androecium development BP 6.412e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
SQ8 roots 2hr KNO3 nitrogen		 Log2 signal ratio
seed germinating in countinuous light 48 h SL
1 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 1.271 -0.985
2 248122_at AT5G54700 [Ankyrin repeat family protein] 1.246 -0.821
3 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 1.149 -0.089
4 261020_at AT1G26390 [FAD-binding Berberine family protein] 1.104 -0.074
5 261021_at AT1G26380 [FAD-binding Berberine family protein] 1.046 -0.639
6 261474_at AT1G14540 PER4, peroxidase 4 1.034 -0.083
7 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 0.993 -0.329
8 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] 0.968 -0.228
9 253707_at AT4G29200 [Beta-galactosidase related protein] 0.939 0.132
10 245677_at AT1G56660 unknown 0.922 0.307
11 266282_at AT2G29220 LecRK-III.1, L-type lectin receptor kinase III.1 0.882 0.080
12 261542_at AT1G63560 [Receptor-like protein kinase-related family protein] 0.870 -0.794
13 261475_at AT1G14550 [Peroxidase superfamily protein] 0.853 0.091
14 255471_at AT4G03050 AOP3 0.843 0.556
15 247913_at AT5G57510 unknown 0.773 -1.059
16 256442_at AT3G10930 unknown 0.667 -0.502
17 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.659 -0.301
18 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.651 -0.602
19 261466_at AT1G07690 unknown 0.635 0.067
20 260556_at AT2G43620 [Chitinase family protein] 0.625 0.323
21 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.614 0.246
22 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 0.610 0.057
23 251401_at AT3G60270 [Cupredoxin superfamily protein] 0.604 -0.718
24 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.604 0.249
25 248384_at AT5G51930 [Glucose-methanol-choline (GMC) oxidoreductase family protein] 0.601 -0.535
26 261006_at AT1G26410 [FAD-binding Berberine family protein] 0.590 -0.066
27 254566_at AT4G19240 unknown 0.575 -0.631
28 244970_at ATCG00660 RPL20, ribosomal protein L20 0.552 -0.282
29 256930_at AT3G22460 OASA2, O-acetylserine (thiol) lyase (OAS-TL) isoform A2 0.546 0.452
30 253796_at AT4G28460 unknown 0.543 0.497
31 267457_at AT2G33790 AGP30, arabinogalactan protein 30, ATAGP30 0.542 -0.180
32 261581_at AT1G01140 CIPK9, CBL-interacting protein kinase 9, PKS6, PROTEIN KINASE 6, SnRK3.12, SNF1-RELATED PROTEIN KINASE 3.12 0.542 0.352
33 256347_at AT1G54923 unknown 0.536 -0.659
34 249071_at AT5G44050 [MATE efflux family protein] 0.532 -0.462
35 250135_at AT5G15360 unknown 0.525 -0.519
36 254582_at AT4G19470 [Leucine-rich repeat (LRR) family protein] 0.524 -0.781
37 247622_at AT5G60350 unknown 0.512 -0.168
38 247848_at AT5G58120 [Disease resistance protein (TIR-NBS-LRR class) family] 0.511 -0.362
39 265618_at AT2G25460 unknown 0.500 -0.400
40 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 0.500 0.319
41 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.499 0.908
42 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 0.496 0.924
43 251950_at AT3G53600 [C2H2-type zinc finger family protein] 0.495 -1.244
44 249567_at AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.495 0.865
45 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] 0.494 -0.512
46 267343_at AT2G44260 unknown 0.490 -0.321
47 257417_at AT1G10110 [F-box family protein] 0.489 -0.613
48 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 0.488 0.112
49 244921_s_at ATMG01000 ORF114 0.482 -0.518
50 256306_at AT1G30370 DLAH, DAD1-like acylhydrolase 0.475 -0.610
51 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 0.472 -0.979
52 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] 0.469 0.147
53 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.466 -0.007
54 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.457 0.146
55 261567_at AT1G33055 unknown 0.455 0.101
56 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 0.450 0.713
57 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] 0.442 -0.180
58 255733_at AT1G25400 unknown 0.441 -0.511
59 257925_at AT3G23170 unknown 0.438 0.884
60 267414_at AT2G34790 EDA28, EMBRYO SAC DEVELOPMENT ARREST 28, MEE23, MATERNAL EFFECT EMBRYO ARREST 23 0.435 -0.568
61 262303_at AT1G70920 ATHB18, homeobox-leucine zipper protein 18, HB18, homeobox-leucine zipper protein 18 0.429 -0.314
62 265513_at AT2G06140 unknown 0.428 -0.478
63 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.427 0.042
64 266010_at AT2G37430 ZAT11, zinc finger of Arabidopsis thaliana 11 0.424 0.276
65 252395_at AT3G47950 AHA4, H(+)-ATPase 4, HA4, H(+)-ATPase 4 0.422 -0.385
66 252663_at AT3G44070 [Glycosyl hydrolase family 35 protein] 0.422 0.520
67 253827_at AT4G28085 unknown 0.420 -0.607
68 255257_at AT4G05050 UBQ11, ubiquitin 11 -1.467 0.888
69 248978_at AT5G45070 AtPP2-A8, phloem protein 2-A8, PP2-A8, phloem protein 2-A8 -1.422 -0.719
70 249812_at AT5G23830 [MD-2-related lipid recognition domain-containing protein] -1.224 1.399
71 266851_at AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 -1.143 0.295
72 264282_at AT1G61840 [Cysteine/Histidine-rich C1 domain family protein] -1.137 -0.731
73 248944_at AT5G45500 [RNI-like superfamily protein] -1.093 0.753
74 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 -1.070 0.278
75 265124_at AT1G55430 [Cysteine/Histidine-rich C1 domain family protein] -0.970 -0.604
76 250142_at AT5G14650 [Pectin lyase-like superfamily protein] -0.947 -0.504
77 247729_at AT5G59530 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.940 -1.367
78 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like -0.923 -0.958
79 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] -0.922 0.279
80 259346_at AT3G03910 glutamate dehydrogenase 3 -0.894 -0.083
81 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] -0.884 0.140
82 254979_at AT4G10550 [Subtilase family protein] -0.864 -0.406
83 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] -0.847 -0.326
84 258059_at AT3G29035 ANAC059, Arabidopsis NAC domain containing protein 59, ATNAC3, NAC domain containing protein 3, NAC3, NAC domain containing protein 3, ORS1, ORE1 SISTER1 -0.819 -0.697
85 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] -0.804 -0.782
86 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] -0.802 -0.052
87 245611_at AT4G14390 [Ankyrin repeat family protein] -0.791 -0.563
88 250755_at AT5G05750 [DNAJ heat shock N-terminal domain-containing protein] -0.751 -0.063
89 249562_at AT5G38350 [Disease resistance protein (NBS-LRR class) family] -0.750 -0.400
90 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.749 -0.071
91 249617_at AT5G37450 [Leucine-rich repeat protein kinase family protein] -0.722 -0.805
92 248048_at AT5G56080 ATNAS2, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, NAS2, nicotianamine synthase 2 -0.719 -0.236
93 252703_at AT3G43740 [Leucine-rich repeat (LRR) family protein] -0.715 0.873
94 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] -0.711 -1.090
95 264434_at AT1G10340 [Ankyrin repeat family protein] -0.696 -0.263
96 249186_at AT5G43040 [Cysteine/Histidine-rich C1 domain family protein] -0.692 -0.409
97 246478_at AT5G15980 [Pentatricopeptide repeat (PPR) superfamily protein] -0.689 0.012
98 250433_at AT5G10400 H3.1, histone 3.1 -0.685 0.189
99 255484_at AT4G02540 [Cysteine/Histidine-rich C1 domain family protein] -0.672 1.394
100 251465_at AT3G59360 ATUTR6, UDP-GALACTOSE TRANSPORTER 6, UTR6, UDP-galactose transporter 6 -0.669 0.067
101 257432_at AT2G21850 [Cysteine/Histidine-rich C1 domain family protein] -0.658 0.422
102 263777_at AT2G46450 ATCNGC12, cyclic nucleotide-gated channel 12, CNGC12, cyclic nucleotide-gated channel 12 -0.657 0.369
103 264101_at AT1G79000 ATHAC1, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, ATHPCAT2, ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, HAC1, histone acetyltransferase of the CBP family 1, PCAT2, P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2 -0.640 -0.612
104 245456_at AT4G16950 RPP5, RECOGNITION OF PERONOSPORA PARASITICA 5 -0.639 0.443
105 246807_at AT5G27100 ATGLR2.1, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, GLR2.1, glutamate receptor 2.1 -0.639 -0.739
106 248415_at AT5G51620 [Uncharacterised protein family (UPF0172)] -0.635 0.130
107 249096_at AT5G43910 [pfkB-like carbohydrate kinase family protein] -0.623 -0.696
108 254306_at AT4G22330 ATCES1 -0.621 0.473
109 249185_at AT5G43030 [Cysteine/Histidine-rich C1 domain family protein] -0.597 -0.034
110 250771_at AT5G05400 [LRR and NB-ARC domains-containing disease resistance protein] -0.583 -0.567
111 255547_at AT4G01920 [Cysteine/Histidine-rich C1 domain family protein] -0.567 -0.093
112 248416_at AT5G51630 [Disease resistance protein (TIR-NBS-LRR class) family] -0.565 0.349
113 253132_at AT4G35580 CBNAC, calmodulin-binding NAC protein, NTL9, NAC transcription factor-like 9 -0.541 0.079
114 247591_at AT5G60770 ATNRT2.4, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, NRT2.4, nitrate transporter 2.4 -0.539 -0.220
115 263800_at AT2G24600 [Ankyrin repeat family protein] -0.538 0.432
116 266176_at AT2G02250 AtPP2-B2, phloem protein 2-B2, PP2-B2, phloem protein 2-B2 -0.538 -0.525
117 262918_at AT1G65000 unknown -0.523 0.088
118 249016_at AT5G44750 ATREV1, ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, REV1 -0.520 -0.880
119 255924_at AT1G22170 [Phosphoglycerate mutase family protein] -0.514 0.063
120 247519_at AT5G61430 ANAC100, NAC domain containing protein 100, ATNAC5, NAC100, NAC domain containing protein 100 -0.509 -0.825
121 258545_at AT3G07050 NSN1, nucleostemin-like 1 -0.506 0.986
122 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 -0.506 -0.930
123 259558_at AT1G21230 WAK5, wall associated kinase 5 -0.504 -0.951
124 248427_at AT5G51750 ATSBT1.3, subtilase 1.3, SBT1.3, subtilase 1.3 -0.498 0.662
125 249724_at AT5G35450 [Disease resistance protein (CC-NBS-LRR class) family] -0.496 -0.017
126 245327_at AT4G16850 unknown -0.495 -0.549
127 247345_at AT5G63760 ARI15, ARIADNE 15, ATARI15, ARABIDOPSIS ARIADNE 15 -0.494 -0.439
128 250426_at AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -0.486 -0.509
129 252619_at AT3G45210 unknown -0.482 0.713
130 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.481 0.475
131 249897_at AT5G22550 unknown -0.479 -0.651
132 255260_at AT4G05040 [ankyrin repeat family protein] -0.475 -0.174
133 266838_at AT2G25980 [Mannose-binding lectin superfamily protein] -0.474 1.416