4.0:Information of module
SQ8 roots 2hr KNO3 nitrogen
In comparison with torpedo-basal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 3.087e-14
GO:0010243 response to organonitrogen compound BP 7.374e-14
GO:1901698 response to nitrogen compound BP 1.090e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 1.515e-04
GO:0048443 stamen development BP 6.412e-04
GO:0048466 androecium development BP 6.412e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
SQ8 roots 2hr KNO3 nitrogen		 Log2 signal ratio
torpedo-basal
1 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 1.271 -0.982
2 248122_at AT5G54700 [Ankyrin repeat family protein] 1.246 -0.615
3 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 1.149 0.060
4 261020_at AT1G26390 [FAD-binding Berberine family protein] 1.104 0.264
5 261021_at AT1G26380 [FAD-binding Berberine family protein] 1.046 -0.648
6 261474_at AT1G14540 PER4, peroxidase 4 1.034 -0.289
7 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 0.993 -0.019
8 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] 0.968 0.048
9 253707_at AT4G29200 [Beta-galactosidase related protein] 0.939 0.499
10 245677_at AT1G56660 unknown 0.922 0.247
11 266282_at AT2G29220 LecRK-III.1, L-type lectin receptor kinase III.1 0.882 0.372
12 261542_at AT1G63560 [Receptor-like protein kinase-related family protein] 0.870 -0.480
13 261475_at AT1G14550 [Peroxidase superfamily protein] 0.853 0.399
14 255471_at AT4G03050 AOP3 0.843 1.375
15 247913_at AT5G57510 unknown 0.773 -0.923
16 256442_at AT3G10930 unknown 0.667 -0.485
17 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.659 -0.183
18 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.651 -0.288
19 261466_at AT1G07690 unknown 0.635 0.003
20 260556_at AT2G43620 [Chitinase family protein] 0.625 0.234
21 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.614 0.547
22 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 0.610 -0.156
23 251401_at AT3G60270 [Cupredoxin superfamily protein] 0.604 -0.421
24 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.604 -0.360
25 248384_at AT5G51930 [Glucose-methanol-choline (GMC) oxidoreductase family protein] 0.601 -0.211
26 261006_at AT1G26410 [FAD-binding Berberine family protein] 0.590 0.267
27 254566_at AT4G19240 unknown 0.575 -0.455
28 244970_at ATCG00660 RPL20, ribosomal protein L20 0.552 0.028
29 256930_at AT3G22460 OASA2, O-acetylserine (thiol) lyase (OAS-TL) isoform A2 0.546 0.783
30 253796_at AT4G28460 unknown 0.543 0.832
31 267457_at AT2G33790 AGP30, arabinogalactan protein 30, ATAGP30 0.542 -0.929
32 261581_at AT1G01140 CIPK9, CBL-interacting protein kinase 9, PKS6, PROTEIN KINASE 6, SnRK3.12, SNF1-RELATED PROTEIN KINASE 3.12 0.542 0.056
33 256347_at AT1G54923 unknown 0.536 -0.234
34 249071_at AT5G44050 [MATE efflux family protein] 0.532 -0.588
35 250135_at AT5G15360 unknown 0.525 0.094
36 254582_at AT4G19470 [Leucine-rich repeat (LRR) family protein] 0.524 -0.520
37 247622_at AT5G60350 unknown 0.512 0.038
38 247848_at AT5G58120 [Disease resistance protein (TIR-NBS-LRR class) family] 0.511 0.195
39 265618_at AT2G25460 unknown 0.500 -0.355
40 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 0.500 0.628
41 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.499 0.323
42 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 0.496 0.068
43 251950_at AT3G53600 [C2H2-type zinc finger family protein] 0.495 -1.201
44 249567_at AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.495 0.458
45 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] 0.494 -1.176
46 267343_at AT2G44260 unknown 0.490 -0.254
47 257417_at AT1G10110 [F-box family protein] 0.489 -0.300
48 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 0.488 0.494
49 244921_s_at ATMG01000 ORF114 0.482 -0.074
50 256306_at AT1G30370 DLAH, DAD1-like acylhydrolase 0.475 -0.326
51 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 0.472 -0.696
52 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] 0.469 0.663
53 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.466 -0.158
54 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.457 0.236
55 261567_at AT1G33055 unknown 0.455 0.418
56 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 0.450 0.965
57 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] 0.442 0.010
58 255733_at AT1G25400 unknown 0.441 -0.274
59 257925_at AT3G23170 unknown 0.438 0.516
60 267414_at AT2G34790 EDA28, EMBRYO SAC DEVELOPMENT ARREST 28, MEE23, MATERNAL EFFECT EMBRYO ARREST 23 0.435 -0.532
61 262303_at AT1G70920 ATHB18, homeobox-leucine zipper protein 18, HB18, homeobox-leucine zipper protein 18 0.429 0.090
62 265513_at AT2G06140 unknown 0.428 -0.344
63 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.427 -0.001
64 266010_at AT2G37430 ZAT11, zinc finger of Arabidopsis thaliana 11 0.424 0.489
65 252395_at AT3G47950 AHA4, H(+)-ATPase 4, HA4, H(+)-ATPase 4 0.422 0.104
66 252663_at AT3G44070 [Glycosyl hydrolase family 35 protein] 0.422 0.943
67 253827_at AT4G28085 unknown 0.420 -0.382
68 255257_at AT4G05050 UBQ11, ubiquitin 11 -1.467 0.375
69 248978_at AT5G45070 AtPP2-A8, phloem protein 2-A8, PP2-A8, phloem protein 2-A8 -1.422 -0.141
70 249812_at AT5G23830 [MD-2-related lipid recognition domain-containing protein] -1.224 0.299
71 266851_at AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 -1.143 0.528
72 264282_at AT1G61840 [Cysteine/Histidine-rich C1 domain family protein] -1.137 -0.490
73 248944_at AT5G45500 [RNI-like superfamily protein] -1.093 0.713
74 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 -1.070 0.065
75 265124_at AT1G55430 [Cysteine/Histidine-rich C1 domain family protein] -0.970 -0.374
76 250142_at AT5G14650 [Pectin lyase-like superfamily protein] -0.947 -0.234
77 247729_at AT5G59530 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.940 -1.181
78 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like -0.923 -0.569
79 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] -0.922 0.598
80 259346_at AT3G03910 glutamate dehydrogenase 3 -0.894 0.041
81 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] -0.884 0.027
82 254979_at AT4G10550 [Subtilase family protein] -0.864 0.243
83 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] -0.847 -0.607
84 258059_at AT3G29035 ANAC059, Arabidopsis NAC domain containing protein 59, ATNAC3, NAC domain containing protein 3, NAC3, NAC domain containing protein 3, ORS1, ORE1 SISTER1 -0.819 -0.632
85 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] -0.804 -0.751
86 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] -0.802 -0.423
87 245611_at AT4G14390 [Ankyrin repeat family protein] -0.791 -0.254
88 250755_at AT5G05750 [DNAJ heat shock N-terminal domain-containing protein] -0.751 -0.356
89 249562_at AT5G38350 [Disease resistance protein (NBS-LRR class) family] -0.750 -0.133
90 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.749 -0.018
91 249617_at AT5G37450 [Leucine-rich repeat protein kinase family protein] -0.722 -0.527
92 248048_at AT5G56080 ATNAS2, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, NAS2, nicotianamine synthase 2 -0.719 -0.124
93 252703_at AT3G43740 [Leucine-rich repeat (LRR) family protein] -0.715 0.621
94 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] -0.711 -1.238
95 264434_at AT1G10340 [Ankyrin repeat family protein] -0.696 0.280
96 249186_at AT5G43040 [Cysteine/Histidine-rich C1 domain family protein] -0.692 -0.257
97 246478_at AT5G15980 [Pentatricopeptide repeat (PPR) superfamily protein] -0.689 0.112
98 250433_at AT5G10400 H3.1, histone 3.1 -0.685 0.035
99 255484_at AT4G02540 [Cysteine/Histidine-rich C1 domain family protein] -0.672 1.479
100 251465_at AT3G59360 ATUTR6, UDP-GALACTOSE TRANSPORTER 6, UTR6, UDP-galactose transporter 6 -0.669 -0.326
101 257432_at AT2G21850 [Cysteine/Histidine-rich C1 domain family protein] -0.658 0.419
102 263777_at AT2G46450 ATCNGC12, cyclic nucleotide-gated channel 12, CNGC12, cyclic nucleotide-gated channel 12 -0.657 0.218
103 264101_at AT1G79000 ATHAC1, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, ATHPCAT2, ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, HAC1, histone acetyltransferase of the CBP family 1, PCAT2, P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2 -0.640 -1.122
104 245456_at AT4G16950 RPP5, RECOGNITION OF PERONOSPORA PARASITICA 5 -0.639 0.169
105 246807_at AT5G27100 ATGLR2.1, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, GLR2.1, glutamate receptor 2.1 -0.639 -0.346
106 248415_at AT5G51620 [Uncharacterised protein family (UPF0172)] -0.635 -0.005
107 249096_at AT5G43910 [pfkB-like carbohydrate kinase family protein] -0.623 -0.701
108 254306_at AT4G22330 ATCES1 -0.621 0.263
109 249185_at AT5G43030 [Cysteine/Histidine-rich C1 domain family protein] -0.597 0.081
110 250771_at AT5G05400 [LRR and NB-ARC domains-containing disease resistance protein] -0.583 -0.434
111 255547_at AT4G01920 [Cysteine/Histidine-rich C1 domain family protein] -0.567 -0.005
112 248416_at AT5G51630 [Disease resistance protein (TIR-NBS-LRR class) family] -0.565 0.854
113 253132_at AT4G35580 CBNAC, calmodulin-binding NAC protein, NTL9, NAC transcription factor-like 9 -0.541 -0.318
114 247591_at AT5G60770 ATNRT2.4, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, NRT2.4, nitrate transporter 2.4 -0.539 0.342
115 263800_at AT2G24600 [Ankyrin repeat family protein] -0.538 0.703
116 266176_at AT2G02250 AtPP2-B2, phloem protein 2-B2, PP2-B2, phloem protein 2-B2 -0.538 -0.271
117 262918_at AT1G65000 unknown -0.523 0.306
118 249016_at AT5G44750 ATREV1, ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, REV1 -0.520 -0.739
119 255924_at AT1G22170 [Phosphoglycerate mutase family protein] -0.514 -0.028
120 247519_at AT5G61430 ANAC100, NAC domain containing protein 100, ATNAC5, NAC100, NAC domain containing protein 100 -0.509 -0.628
121 258545_at AT3G07050 NSN1, nucleostemin-like 1 -0.506 1.140
122 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 -0.506 -0.523
123 259558_at AT1G21230 WAK5, wall associated kinase 5 -0.504 -0.730
124 248427_at AT5G51750 ATSBT1.3, subtilase 1.3, SBT1.3, subtilase 1.3 -0.498 0.606
125 249724_at AT5G35450 [Disease resistance protein (CC-NBS-LRR class) family] -0.496 -0.176
126 245327_at AT4G16850 unknown -0.495 -0.452
127 247345_at AT5G63760 ARI15, ARIADNE 15, ATARI15, ARABIDOPSIS ARIADNE 15 -0.494 -0.207
128 250426_at AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -0.486 -0.116
129 252619_at AT3G45210 unknown -0.482 0.408
130 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.481 0.024
131 249897_at AT5G22550 unknown -0.479 -0.671
132 255260_at AT4G05040 [ankyrin repeat family protein] -0.475 -0.066
133 266838_at AT2G25980 [Mannose-binding lectin superfamily protein] -0.474 1.033