4.0:Information of module
SQ8 roots 2hr KNO3 nitrogen
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 0 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 3.087e-14
GO:0010243 response to organonitrogen compound BP 7.374e-14
GO:1901698 response to nitrogen compound BP 1.090e-12
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 1.515e-04
GO:0048443 stamen development BP 6.412e-04
GO:0048466 androecium development BP 6.412e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
SQ8 roots 2hr KNO3 nitrogen		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 0 hrs Taking 70 mm of Stump (4dpg)
1 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 1.271 -0.867
2 248122_at AT5G54700 [Ankyrin repeat family protein] 1.246 -0.799
3 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 1.149 0.005
4 261020_at AT1G26390 [FAD-binding Berberine family protein] 1.104 0.219
5 261021_at AT1G26380 [FAD-binding Berberine family protein] 1.046 -0.506
6 261474_at AT1G14540 PER4, peroxidase 4 1.034 -0.448
7 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 0.993 -0.253
8 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] 0.968 0.208
9 253707_at AT4G29200 [Beta-galactosidase related protein] 0.939 0.309
10 245677_at AT1G56660 unknown 0.922 0.416
11 266282_at AT2G29220 LecRK-III.1, L-type lectin receptor kinase III.1 0.882 0.393
12 261542_at AT1G63560 [Receptor-like protein kinase-related family protein] 0.870 -0.708
13 261475_at AT1G14550 [Peroxidase superfamily protein] 0.853 -0.058
14 255471_at AT4G03050 AOP3 0.843 0.787
15 247913_at AT5G57510 unknown 0.773 -0.953
16 256442_at AT3G10930 unknown 0.667 -0.559
17 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.659 -0.480
18 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.651 -0.284
19 261466_at AT1G07690 unknown 0.635 -0.065
20 260556_at AT2G43620 [Chitinase family protein] 0.625 0.210
21 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.614 0.535
22 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 0.610 -0.293
23 251401_at AT3G60270 [Cupredoxin superfamily protein] 0.604 -0.421
24 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.604 -0.614
25 248384_at AT5G51930 [Glucose-methanol-choline (GMC) oxidoreductase family protein] 0.601 -0.153
26 261006_at AT1G26410 [FAD-binding Berberine family protein] 0.590 0.191
27 254566_at AT4G19240 unknown 0.575 -0.326
28 244970_at ATCG00660 RPL20, ribosomal protein L20 0.552 0.200
29 256930_at AT3G22460 OASA2, O-acetylserine (thiol) lyase (OAS-TL) isoform A2 0.546 0.656
30 253796_at AT4G28460 unknown 0.543 0.556
31 267457_at AT2G33790 AGP30, arabinogalactan protein 30, ATAGP30 0.542 0.124
32 261581_at AT1G01140 CIPK9, CBL-interacting protein kinase 9, PKS6, PROTEIN KINASE 6, SnRK3.12, SNF1-RELATED PROTEIN KINASE 3.12 0.542 -0.433
33 256347_at AT1G54923 unknown 0.536 -0.319
34 249071_at AT5G44050 [MATE efflux family protein] 0.532 -0.688
35 250135_at AT5G15360 unknown 0.525 -0.095
36 254582_at AT4G19470 [Leucine-rich repeat (LRR) family protein] 0.524 -0.601
37 247622_at AT5G60350 unknown 0.512 -0.014
38 247848_at AT5G58120 [Disease resistance protein (TIR-NBS-LRR class) family] 0.511 -0.066
39 265618_at AT2G25460 unknown 0.500 -0.164
40 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 0.500 0.776
41 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.499 1.185
42 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 0.496 0.091
43 251950_at AT3G53600 [C2H2-type zinc finger family protein] 0.495 -1.190
44 249567_at AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.495 0.315
45 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] 0.494 -1.383
46 267343_at AT2G44260 unknown 0.490 -0.222
47 257417_at AT1G10110 [F-box family protein] 0.489 -0.276
48 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 0.488 0.113
49 244921_s_at ATMG01000 ORF114 0.482 -0.015
50 256306_at AT1G30370 DLAH, DAD1-like acylhydrolase 0.475 -0.493
51 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 0.472 -0.781
52 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] 0.469 0.327
53 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.466 -0.272
54 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.457 0.098
55 261567_at AT1G33055 unknown 0.455 -0.080
56 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 0.450 0.694
57 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] 0.442 -0.189
58 255733_at AT1G25400 unknown 0.441 -0.479
59 257925_at AT3G23170 unknown 0.438 0.475
60 267414_at AT2G34790 EDA28, EMBRYO SAC DEVELOPMENT ARREST 28, MEE23, MATERNAL EFFECT EMBRYO ARREST 23 0.435 -0.610
61 262303_at AT1G70920 ATHB18, homeobox-leucine zipper protein 18, HB18, homeobox-leucine zipper protein 18 0.429 0.026
62 265513_at AT2G06140 unknown 0.428 -0.279
63 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.427 -0.079
64 266010_at AT2G37430 ZAT11, zinc finger of Arabidopsis thaliana 11 0.424 0.528
65 252395_at AT3G47950 AHA4, H(+)-ATPase 4, HA4, H(+)-ATPase 4 0.422 -0.239
66 252663_at AT3G44070 [Glycosyl hydrolase family 35 protein] 0.422 0.911
67 253827_at AT4G28085 unknown 0.420 -0.178
68 255257_at AT4G05050 UBQ11, ubiquitin 11 -1.467 0.573
69 248978_at AT5G45070 AtPP2-A8, phloem protein 2-A8, PP2-A8, phloem protein 2-A8 -1.422 -0.297
70 249812_at AT5G23830 [MD-2-related lipid recognition domain-containing protein] -1.224 1.586
71 266851_at AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 -1.143 0.524
72 264282_at AT1G61840 [Cysteine/Histidine-rich C1 domain family protein] -1.137 -0.508
73 248944_at AT5G45500 [RNI-like superfamily protein] -1.093 0.808
74 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 -1.070 0.141
75 265124_at AT1G55430 [Cysteine/Histidine-rich C1 domain family protein] -0.970 -0.355
76 250142_at AT5G14650 [Pectin lyase-like superfamily protein] -0.947 -0.346
77 247729_at AT5G59530 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.940 -1.148
78 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like -0.923 -0.731
79 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] -0.922 0.432
80 259346_at AT3G03910 glutamate dehydrogenase 3 -0.894 0.060
81 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] -0.884 0.171
82 254979_at AT4G10550 [Subtilase family protein] -0.864 -0.258
83 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] -0.847 -0.285
84 258059_at AT3G29035 ANAC059, Arabidopsis NAC domain containing protein 59, ATNAC3, NAC domain containing protein 3, NAC3, NAC domain containing protein 3, ORS1, ORE1 SISTER1 -0.819 -0.381
85 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] -0.804 -0.662
86 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] -0.802 0.039
87 245611_at AT4G14390 [Ankyrin repeat family protein] -0.791 -0.320
88 250755_at AT5G05750 [DNAJ heat shock N-terminal domain-containing protein] -0.751 -0.181
89 249562_at AT5G38350 [Disease resistance protein (NBS-LRR class) family] -0.750 -0.315
90 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.749 0.062
91 249617_at AT5G37450 [Leucine-rich repeat protein kinase family protein] -0.722 -0.410
92 248048_at AT5G56080 ATNAS2, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, NAS2, nicotianamine synthase 2 -0.719 -0.014
93 252703_at AT3G43740 [Leucine-rich repeat (LRR) family protein] -0.715 0.892
94 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] -0.711 -0.797
95 264434_at AT1G10340 [Ankyrin repeat family protein] -0.696 0.157
96 249186_at AT5G43040 [Cysteine/Histidine-rich C1 domain family protein] -0.692 -0.065
97 246478_at AT5G15980 [Pentatricopeptide repeat (PPR) superfamily protein] -0.689 0.346
98 250433_at AT5G10400 H3.1, histone 3.1 -0.685 -0.065
99 255484_at AT4G02540 [Cysteine/Histidine-rich C1 domain family protein] -0.672 1.601
100 251465_at AT3G59360 ATUTR6, UDP-GALACTOSE TRANSPORTER 6, UTR6, UDP-galactose transporter 6 -0.669 -0.273
101 257432_at AT2G21850 [Cysteine/Histidine-rich C1 domain family protein] -0.658 0.903
102 263777_at AT2G46450 ATCNGC12, cyclic nucleotide-gated channel 12, CNGC12, cyclic nucleotide-gated channel 12 -0.657 0.451
103 264101_at AT1G79000 ATHAC1, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, ATHPCAT2, ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, HAC1, histone acetyltransferase of the CBP family 1, PCAT2, P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2 -0.640 -1.015
104 245456_at AT4G16950 RPP5, RECOGNITION OF PERONOSPORA PARASITICA 5 -0.639 0.111
105 246807_at AT5G27100 ATGLR2.1, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, GLR2.1, glutamate receptor 2.1 -0.639 -0.275
106 248415_at AT5G51620 [Uncharacterised protein family (UPF0172)] -0.635 0.628
107 249096_at AT5G43910 [pfkB-like carbohydrate kinase family protein] -0.623 -0.726
108 254306_at AT4G22330 ATCES1 -0.621 0.447
109 249185_at AT5G43030 [Cysteine/Histidine-rich C1 domain family protein] -0.597 0.692
110 250771_at AT5G05400 [LRR and NB-ARC domains-containing disease resistance protein] -0.583 -0.480
111 255547_at AT4G01920 [Cysteine/Histidine-rich C1 domain family protein] -0.567 0.144
112 248416_at AT5G51630 [Disease resistance protein (TIR-NBS-LRR class) family] -0.565 0.570
113 253132_at AT4G35580 CBNAC, calmodulin-binding NAC protein, NTL9, NAC transcription factor-like 9 -0.541 0.014
114 247591_at AT5G60770 ATNRT2.4, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, NRT2.4, nitrate transporter 2.4 -0.539 0.140
115 263800_at AT2G24600 [Ankyrin repeat family protein] -0.538 0.439
116 266176_at AT2G02250 AtPP2-B2, phloem protein 2-B2, PP2-B2, phloem protein 2-B2 -0.538 -0.317
117 262918_at AT1G65000 unknown -0.523 0.589
118 249016_at AT5G44750 ATREV1, ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, REV1 -0.520 -0.944
119 255924_at AT1G22170 [Phosphoglycerate mutase family protein] -0.514 0.175
120 247519_at AT5G61430 ANAC100, NAC domain containing protein 100, ATNAC5, NAC100, NAC domain containing protein 100 -0.509 -0.853
121 258545_at AT3G07050 NSN1, nucleostemin-like 1 -0.506 0.912
122 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 -0.506 -0.741
123 259558_at AT1G21230 WAK5, wall associated kinase 5 -0.504 -0.745
124 248427_at AT5G51750 ATSBT1.3, subtilase 1.3, SBT1.3, subtilase 1.3 -0.498 -0.030
125 249724_at AT5G35450 [Disease resistance protein (CC-NBS-LRR class) family] -0.496 -0.093
126 245327_at AT4G16850 unknown -0.495 -0.598
127 247345_at AT5G63760 ARI15, ARIADNE 15, ATARI15, ARABIDOPSIS ARIADNE 15 -0.494 -0.350
128 250426_at AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -0.486 -0.365
129 252619_at AT3G45210 unknown -0.482 0.235
130 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.481 0.070
131 249897_at AT5G22550 unknown -0.479 -0.571
132 255260_at AT4G05040 [ankyrin repeat family protein] -0.475 -0.208
133 266838_at AT2G25980 [Mannose-binding lectin superfamily protein] -0.474 1.590