4.0:Information of module
SQ8 roots 2hr KNO3 nitrogen
In comparison with Chemically help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 3.087e-14
GO:0010243 response to organonitrogen compound BP 7.374e-14
GO:1901698 response to nitrogen compound BP 1.090e-12
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 1.515e-04
GO:0048443 stamen development BP 6.412e-04
GO:0048466 androecium development BP 6.412e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
SQ8 roots 2hr KNO3 nitrogen		 Log2 signal ratio
Chemically
1 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 1.271 0.013
2 248122_at AT5G54700 [Ankyrin repeat family protein] 1.246 0.030
3 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 1.149 -0.337
4 261020_at AT1G26390 [FAD-binding Berberine family protein] 1.104 -0.243
5 261021_at AT1G26380 [FAD-binding Berberine family protein] 1.046 0.042
6 261474_at AT1G14540 PER4, peroxidase 4 1.034 -0.049
7 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 0.993 0.024
8 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] 0.968 0.016
9 253707_at AT4G29200 [Beta-galactosidase related protein] 0.939 0.008
10 245677_at AT1G56660 unknown 0.922 0.001
11 266282_at AT2G29220 LecRK-III.1, L-type lectin receptor kinase III.1 0.882 -0.016
12 261542_at AT1G63560 [Receptor-like protein kinase-related family protein] 0.870 0.034
13 261475_at AT1G14550 [Peroxidase superfamily protein] 0.853 0.010
14 255471_at AT4G03050 AOP3 0.843 0.022
15 247913_at AT5G57510 unknown 0.773 -0.008
16 256442_at AT3G10930 unknown 0.667 -0.067
17 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.659 0.123
18 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.651 -0.040
19 261466_at AT1G07690 unknown 0.635 -0.026
20 260556_at AT2G43620 [Chitinase family protein] 0.625 0.232
21 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.614 -0.279
22 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 0.610 -0.021
23 251401_at AT3G60270 [Cupredoxin superfamily protein] 0.604 0.046
24 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 0.604 -0.203
25 248384_at AT5G51930 [Glucose-methanol-choline (GMC) oxidoreductase family protein] 0.601 0.015
26 261006_at AT1G26410 [FAD-binding Berberine family protein] 0.590 -0.015
27 254566_at AT4G19240 unknown 0.575 0.048
28 244970_at ATCG00660 RPL20, ribosomal protein L20 0.552 0.093
29 256930_at AT3G22460 OASA2, O-acetylserine (thiol) lyase (OAS-TL) isoform A2 0.546 0.064
30 253796_at AT4G28460 unknown 0.543 0.018
31 267457_at AT2G33790 AGP30, arabinogalactan protein 30, ATAGP30 0.542 -0.412
32 261581_at AT1G01140 CIPK9, CBL-interacting protein kinase 9, PKS6, PROTEIN KINASE 6, SnRK3.12, SNF1-RELATED PROTEIN KINASE 3.12 0.542 0.025
33 256347_at AT1G54923 unknown 0.536 -0.005
34 249071_at AT5G44050 [MATE efflux family protein] 0.532 -0.106
35 250135_at AT5G15360 unknown 0.525 -0.039
36 254582_at AT4G19470 [Leucine-rich repeat (LRR) family protein] 0.524 0.049
37 247622_at AT5G60350 unknown 0.512 -0.043
38 247848_at AT5G58120 [Disease resistance protein (TIR-NBS-LRR class) family] 0.511 0.032
39 265618_at AT2G25460 unknown 0.500 -0.087
40 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 0.500 0.085
41 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.499 0.076
42 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 0.496 -0.658
43 251950_at AT3G53600 [C2H2-type zinc finger family protein] 0.495 0.005
44 249567_at AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.495 -0.283
45 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] 0.494 0.182
46 267343_at AT2G44260 unknown 0.490 -0.053
47 257417_at AT1G10110 [F-box family protein] 0.489 0.043
48 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 0.488 0.017
49 244921_s_at ATMG01000 ORF114 0.482 -0.005
50 256306_at AT1G30370 DLAH, DAD1-like acylhydrolase 0.475 -0.005
51 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 0.472 -0.008
52 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] 0.469 0.045
53 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.466 0.067
54 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.457 0.114
55 261567_at AT1G33055 unknown 0.455 -0.072
56 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 0.450 -0.024
57 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] 0.442 0.109
58 255733_at AT1G25400 unknown 0.441 -0.068
59 257925_at AT3G23170 unknown 0.438 0.068
60 267414_at AT2G34790 EDA28, EMBRYO SAC DEVELOPMENT ARREST 28, MEE23, MATERNAL EFFECT EMBRYO ARREST 23 0.435 0.076
61 262303_at AT1G70920 ATHB18, homeobox-leucine zipper protein 18, HB18, homeobox-leucine zipper protein 18 0.429 0.062
62 265513_at AT2G06140 unknown 0.428 0.067
63 245385_at AT4G14020 [Rapid alkalinization factor (RALF) family protein] 0.427 0.065
64 266010_at AT2G37430 ZAT11, zinc finger of Arabidopsis thaliana 11 0.424 0.036
65 252395_at AT3G47950 AHA4, H(+)-ATPase 4, HA4, H(+)-ATPase 4 0.422 -0.032
66 252663_at AT3G44070 [Glycosyl hydrolase family 35 protein] 0.422 -0.024
67 253827_at AT4G28085 unknown 0.420 -0.087
68 255257_at AT4G05050 UBQ11, ubiquitin 11 -1.467 0.009
69 248978_at AT5G45070 AtPP2-A8, phloem protein 2-A8, PP2-A8, phloem protein 2-A8 -1.422 -0.042
70 249812_at AT5G23830 [MD-2-related lipid recognition domain-containing protein] -1.224 0.011
71 266851_at AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 -1.143 -0.028
72 264282_at AT1G61840 [Cysteine/Histidine-rich C1 domain family protein] -1.137 -0.026
73 248944_at AT5G45500 [RNI-like superfamily protein] -1.093 -0.004
74 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 -1.070 -0.006
75 265124_at AT1G55430 [Cysteine/Histidine-rich C1 domain family protein] -0.970 0.032
76 250142_at AT5G14650 [Pectin lyase-like superfamily protein] -0.947 0.164
77 247729_at AT5G59530 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.940 -0.039
78 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like -0.923 0.266
79 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] -0.922 -0.039
80 259346_at AT3G03910 glutamate dehydrogenase 3 -0.894 -0.004
81 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] -0.884 -0.054
82 254979_at AT4G10550 [Subtilase family protein] -0.864 0.014
83 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] -0.847 -0.164
84 258059_at AT3G29035 ANAC059, Arabidopsis NAC domain containing protein 59, ATNAC3, NAC domain containing protein 3, NAC3, NAC domain containing protein 3, ORS1, ORE1 SISTER1 -0.819 0.034
85 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] -0.804 -0.056
86 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] -0.802 -0.044
87 245611_at AT4G14390 [Ankyrin repeat family protein] -0.791 0.077
88 250755_at AT5G05750 [DNAJ heat shock N-terminal domain-containing protein] -0.751 -0.040
89 249562_at AT5G38350 [Disease resistance protein (NBS-LRR class) family] -0.750 -0.021
90 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.749 0.265
91 249617_at AT5G37450 [Leucine-rich repeat protein kinase family protein] -0.722 0.053
92 248048_at AT5G56080 ATNAS2, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, NAS2, nicotianamine synthase 2 -0.719 0.017
93 252703_at AT3G43740 [Leucine-rich repeat (LRR) family protein] -0.715 -0.023
94 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] -0.711 0.049
95 264434_at AT1G10340 [Ankyrin repeat family protein] -0.696 0.024
96 249186_at AT5G43040 [Cysteine/Histidine-rich C1 domain family protein] -0.692 -0.045
97 246478_at AT5G15980 [Pentatricopeptide repeat (PPR) superfamily protein] -0.689 0.035
98 250433_at AT5G10400 H3.1, histone 3.1 -0.685 -0.004
99 255484_at AT4G02540 [Cysteine/Histidine-rich C1 domain family protein] -0.672 -0.009
100 251465_at AT3G59360 ATUTR6, UDP-GALACTOSE TRANSPORTER 6, UTR6, UDP-galactose transporter 6 -0.669 -0.006
101 257432_at AT2G21850 [Cysteine/Histidine-rich C1 domain family protein] -0.658 -0.070
102 263777_at AT2G46450 ATCNGC12, cyclic nucleotide-gated channel 12, CNGC12, cyclic nucleotide-gated channel 12 -0.657 0.037
103 264101_at AT1G79000 ATHAC1, ARABIDOPSIS HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 1, ATHPCAT2, ARABIDOPSIS THALIANA P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2, HAC1, histone acetyltransferase of the CBP family 1, PCAT2, P300/CBP ACETYLTRANSFERASE-RELATED PROTEIN 2 -0.640 -0.005
104 245456_at AT4G16950 RPP5, RECOGNITION OF PERONOSPORA PARASITICA 5 -0.639 -0.025
105 246807_at AT5G27100 ATGLR2.1, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, GLR2.1, glutamate receptor 2.1 -0.639 0.008
106 248415_at AT5G51620 [Uncharacterised protein family (UPF0172)] -0.635 -0.015
107 249096_at AT5G43910 [pfkB-like carbohydrate kinase family protein] -0.623 0.027
108 254306_at AT4G22330 ATCES1 -0.621 0.007
109 249185_at AT5G43030 [Cysteine/Histidine-rich C1 domain family protein] -0.597 -0.093
110 250771_at AT5G05400 [LRR and NB-ARC domains-containing disease resistance protein] -0.583 -0.092
111 255547_at AT4G01920 [Cysteine/Histidine-rich C1 domain family protein] -0.567 -0.032
112 248416_at AT5G51630 [Disease resistance protein (TIR-NBS-LRR class) family] -0.565 -0.003
113 253132_at AT4G35580 CBNAC, calmodulin-binding NAC protein, NTL9, NAC transcription factor-like 9 -0.541 0.018
114 247591_at AT5G60770 ATNRT2.4, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, NRT2.4, nitrate transporter 2.4 -0.539 0.039
115 263800_at AT2G24600 [Ankyrin repeat family protein] -0.538 0.046
116 266176_at AT2G02250 AtPP2-B2, phloem protein 2-B2, PP2-B2, phloem protein 2-B2 -0.538 -0.030
117 262918_at AT1G65000 unknown -0.523 -0.032
118 249016_at AT5G44750 ATREV1, ARABIDOPSIS THALIANA HOMOLOG OF REVERSIONLESS 1, REV1 -0.520 0.011
119 255924_at AT1G22170 [Phosphoglycerate mutase family protein] -0.514 0.019
120 247519_at AT5G61430 ANAC100, NAC domain containing protein 100, ATNAC5, NAC100, NAC domain containing protein 100 -0.509 0.016
121 258545_at AT3G07050 NSN1, nucleostemin-like 1 -0.506 0.084
122 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 -0.506 0.006
123 259558_at AT1G21230 WAK5, wall associated kinase 5 -0.504 0.012
124 248427_at AT5G51750 ATSBT1.3, subtilase 1.3, SBT1.3, subtilase 1.3 -0.498 0.012
125 249724_at AT5G35450 [Disease resistance protein (CC-NBS-LRR class) family] -0.496 0.004
126 245327_at AT4G16850 unknown -0.495 -0.009
127 247345_at AT5G63760 ARI15, ARIADNE 15, ATARI15, ARABIDOPSIS ARIADNE 15 -0.494 0.034
128 250426_at AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -0.486 0.245
129 252619_at AT3G45210 unknown -0.482 -0.009
130 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.481 0.046
131 249897_at AT5G22550 unknown -0.479 0.009
132 255260_at AT4G05040 [ankyrin repeat family protein] -0.475 0.013
133 266838_at AT2G25980 [Mannose-binding lectin superfamily protein] -0.474 -0.088