4.0:Information of module
SQ8 roots 2hr KCl control
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010243 response to organonitrogen compound BP 2.183e-07
GO:0010200 response to chitin BP 2.468e-07
GO:0014070 response to organic cyclic compound BP 5.081e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042542 response to hydrogen peroxide BP 7.673e-08
GO:0000302 response to reactive oxygen species BP 9.576e-08
GO:0006950 response to stress BP 3.133e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
SQ8 roots 2hr KCl control		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 248122_at AT5G54700 [Ankyrin repeat family protein] 1.239 -0.883
2 253707_at AT4G29200 [Beta-galactosidase related protein] 1.117 0.146
3 261020_at AT1G26390 [FAD-binding Berberine family protein] 0.968 -0.084
4 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 0.906 -0.049
5 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] 0.811 -0.177
6 251334_at AT3G61390 [RING/U-box superfamily protein] 0.738 -0.955
7 248052_at AT5G55800 [Cysteine/Histidine-rich C1 domain family protein] 0.717 0.063
8 250135_at AT5G15360 unknown 0.697 -0.502
9 254566_at AT4G19240 unknown 0.693 -0.624
10 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.684 -0.352
11 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.654 0.125
12 253796_at AT4G28460 unknown 0.646 0.369
13 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] 0.634 -1.289
14 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.629 0.509
15 247215_at AT5G64905 PROPEP3, elicitor peptide 3 precursor 0.612 -0.256
16 255471_at AT4G03050 AOP3 0.603 0.614
17 252663_at AT3G44070 [Glycosyl hydrolase family 35 protein] 0.595 0.437
18 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 0.592 0.177
19 245677_at AT1G56660 unknown 0.587 0.205
20 266282_at AT2G29220 LecRK-III.1, L-type lectin receptor kinase III.1 0.586 0.059
21 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 0.566 0.210
22 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.560 0.252
23 254582_at AT4G19470 [Leucine-rich repeat (LRR) family protein] 0.549 -0.760
24 265732_at AT2G01300 unknown 0.539 -0.594
25 260121_at AT1G33910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.532 -0.606
26 259442_at AT1G02310 MAN1, endo-beta-mannanase 1 0.526 -0.288
27 260100_at AT1G73177 APC13, anaphase-promoting complex 13, BNS, BONSAI 0.526 0.059
28 254221_at AT4G23820 [Pectin lyase-like superfamily protein] 0.526 1.195
29 251755_at AT3G55790 unknown 0.522 -1.407
30 245307_at AT4G16770 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.516 -0.026
31 250576_at AT5G08250 [Cytochrome P450 superfamily protein] 0.511 -1.019
32 246777_at AT5G27420 ATL31, Arabidopsis toxicos en levadura 31, CNI1, carbon/nitrogen insensitive 1 0.498 -0.836
33 249567_at AT5G38020 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.487 0.038
34 253532_at AT4G31570 unknown 0.479 -0.486
35 267384_at AT2G44370 [Cysteine/Histidine-rich C1 domain family protein] 0.474 -0.611
36 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.468 1.077
37 255274_at AT4G05300 unknown 0.464 -0.686
38 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.462 0.020
39 267135_at AT2G23430 ICK1, KRP1, KIP-RELATED PROTEIN 1 0.462 -0.166
40 263809_at AT2G04570 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.460 -0.438
41 252334_at AT3G48850 MPT2, mitochondrial phosphate transporter 2, PHT3;2, phosphate transporter 3;2 0.459 -0.427
42 263617_at AT2G04670 [gypsy-like retrotransposon family, has a 1.2e-313 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)] 0.451 -0.488
43 249169_at AT5G42880 unknown 0.432 -0.398
44 253352_at AT4G33710 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.430 -0.834
45 260239_at AT1G74360 [Leucine-rich repeat protein kinase family protein] 0.427 -0.536
46 265689_at AT2G24310 unknown 0.425 -0.136
47 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 0.421 0.369
48 256859_at AT3G22940 [F-box associated ubiquitination effector family protein] 0.421 -0.603
49 249634_at AT5G36840 unknown 0.419 -0.922
50 261967_at AT1G36440 unknown 0.418 -0.533
51 259809_at AT1G49800 unknown 0.418 -0.213
52 247487_at AT5G62150 [peptidoglycan-binding LysM domain-containing protein] 0.417 -0.455
53 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.417 0.244
54 265186_at AT1G23560 unknown 0.408 -0.920
55 262737_at AT1G28560 SRD2, SHOOT REDIFFERENTIATION DEFECTIVE 2 0.405 0.709
56 247047_at AT5G66650 unknown 0.400 -0.742
57 264549_at AT1G09440 [Protein kinase superfamily protein] 0.399 -0.022
58 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 0.398 -0.759
59 260845_at AT1G17310 [MADS-box transcription factor family protein] 0.397 -0.794
60 258796_at AT3G04630 WDL1, WVD2-like 1 0.395 0.714
61 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.395 0.062
62 259748_at AT1G71180 [6-phosphogluconate dehydrogenase family protein] 0.394 0.301
63 266355_at AT2G01400 unknown 0.394 0.229
64 248384_at AT5G51930 [Glucose-methanol-choline (GMC) oxidoreductase family protein] 0.393 -0.551
65 260881_at AT1G21550 [Calcium-binding EF-hand family protein] 0.384 -0.074
66 257321_at ATMG01130 ORF106F 0.382 0.132
67 256287_at AT3G12190 unknown 0.381 -0.677
68 259979_at AT1G76600 unknown 0.381 -0.501
69 255881_at AT1G67070 DIN9, DARK INDUCIBLE 9, PMI2, PHOSPHOMANNOSE ISOMERASE 2 0.378 -0.035
70 259428_at AT1G01560 ATMPK11, MAP kinase 11, MPK11, MAP kinase 11 0.377 -0.835
71 245545_at AT4G15280 UGT71B5, UDP-glucosyl transferase 71B5 0.370 -0.646
72 250162_at AT5G15250 ATFTSH6, FTSH6, FTSH protease 6 0.366 -0.165
73 260261_at AT1G68450 PDE337, PIGMENT DEFECTIVE 337 0.365 -0.653
74 262821_at AT1G11800 [endonuclease/exonuclease/phosphatase family protein] 0.365 0.206
75 254727_at AT4G13670 PTAC5, plastid transcriptionally active 5 0.361 0.116
76 255257_at AT4G05050 UBQ11, ubiquitin 11 -1.689 0.861
77 248944_at AT5G45500 [RNI-like superfamily protein] -1.486 0.733
78 264282_at AT1G61840 [Cysteine/Histidine-rich C1 domain family protein] -1.288 -0.195
79 262148_at AT1G52560 [HSP20-like chaperones superfamily protein] -1.282 -1.568
80 266851_at AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 -1.207 0.213
81 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A -1.188 -0.122
82 249812_at AT5G23830 [MD-2-related lipid recognition domain-containing protein] -1.176 1.210
83 248978_at AT5G45070 AtPP2-A8, phloem protein 2-A8, PP2-A8, phloem protein 2-A8 -1.174 -0.754
84 256497_at AT1G31580 CXC750, ECS1 -1.142 0.555
85 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein -1.109 0.227
86 250142_at AT5G14650 [Pectin lyase-like superfamily protein] -1.074 -0.568
87 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] -1.036 -0.663
88 260978_at AT1G53540 [HSP20-like chaperones superfamily protein] -1.033 -0.881
89 248979_at AT5G45080 AtPP2-A6, phloem protein 2-A6, PP2-A6, phloem protein 2-A6 -1.030 0.154
90 246393_at AT1G58150 unknown -0.946 -0.038
91 247729_at AT5G59530 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.940 -1.328
92 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.932 0.107
93 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] -0.916 0.259
94 265124_at AT1G55430 [Cysteine/Histidine-rich C1 domain family protein] -0.900 -0.670
95 252510_at AT3G46270 [receptor protein kinase-related] -0.887 -1.057
96 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 -0.884 0.567
97 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like -0.867 -0.989
98 248048_at AT5G56080 ATNAS2, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, NAS2, nicotianamine synthase 2 -0.865 -0.490
99 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] -0.859 -0.041
100 254979_at AT4G10550 [Subtilase family protein] -0.850 -0.327
101 263777_at AT2G46450 ATCNGC12, cyclic nucleotide-gated channel 12, CNGC12, cyclic nucleotide-gated channel 12 -0.806 0.539
102 258059_at AT3G29035 ANAC059, Arabidopsis NAC domain containing protein 59, ATNAC3, NAC domain containing protein 3, NAC3, NAC domain containing protein 3, ORS1, ORE1 SISTER1 -0.787 -0.832
103 249617_at AT5G37450 [Leucine-rich repeat protein kinase family protein] -0.780 -0.801
104 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] -0.771 -0.389
105 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -0.767 -0.996
106 255484_at AT4G02540 [Cysteine/Histidine-rich C1 domain family protein] -0.737 1.436
107 252530_at AT3G46500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.726 -0.548
108 255547_at AT4G01920 [Cysteine/Histidine-rich C1 domain family protein] -0.722 -0.078
109 254059_at AT4G25200 ATHSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6, HSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6 -0.721 0.026
110 249185_at AT5G43030 [Cysteine/Histidine-rich C1 domain family protein] -0.707 0.230
111 248415_at AT5G51620 [Uncharacterised protein family (UPF0172)] -0.694 0.343
112 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 -0.686 0.417
113 256349_at AT1G54890 [Late embryogenesis abundant (LEA) protein-related] -0.686 0.248
114 264640_at AT1G65680 ATEXPB2, expansin B2, ATHEXP BETA 1.4, EXPB2, expansin B2 -0.683 -0.739
115 249096_at AT5G43910 [pfkB-like carbohydrate kinase family protein] -0.677 -0.775
116 245674_at AT1G56680 [Chitinase family protein] -0.676 0.839
117 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] -0.666 -1.171
118 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.665 -0.305
119 261838_at AT1G16030 Hsp70b, heat shock protein 70B -0.662 -0.622
120 245611_at AT4G14390 [Ankyrin repeat family protein] -0.658 -0.630
121 262894_at AT1G59780 [NB-ARC domain-containing disease resistance protein] -0.644 -1.097
122 248416_at AT5G51630 [Disease resistance protein (TIR-NBS-LRR class) family] -0.644 0.345
123 266176_at AT2G02250 AtPP2-B2, phloem protein 2-B2, PP2-B2, phloem protein 2-B2 -0.639 -0.584
124 257432_at AT2G21850 [Cysteine/Histidine-rich C1 domain family protein] -0.629 0.324
125 257112_at AT3G20120 CYP705A21, cytochrome P450, family 705, subfamily A, polypeptide 21 -0.615 -0.048
126 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] -0.615 -0.367
127 265530_at AT2G06050 AtOPR3, DDE1, DELAYED DEHISCENCE 1, OPR3, oxophytodienoate-reductase 3 -0.612 0.918
128 266838_at AT2G25980 [Mannose-binding lectin superfamily protein] -0.601 1.467
129 260492_at AT2G41850 ADPG2, ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, PGAZAT, polygalacturonase abscission zone A. thaliana -0.601 -0.435
130 263800_at AT2G24600 [Ankyrin repeat family protein] -0.601 0.717
131 249562_at AT5G38350 [Disease resistance protein (NBS-LRR class) family] -0.595 -0.462
132 249897_at AT5G22550 unknown -0.594 -0.493
133 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 -0.594 0.625
134 248318_at AT5G52690 [Copper transport protein family] -0.594 -1.381
135 248077_at AT5G55770 [Cysteine/Histidine-rich C1 domain family protein] -0.587 -0.910
136 250755_at AT5G05750 [DNAJ heat shock N-terminal domain-containing protein] -0.587 0.002
137 261957_at AT1G64660 ATMGL, methionine gamma-lyase, MGL, methionine gamma-lyase -0.585 -0.033
138 266590_at AT2G46240 ATBAG6, ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 6, BAG6, BCL-2-associated athanogene 6 -0.581 -0.882
139 245838_at AT1G58410 [Disease resistance protein (CC-NBS-LRR class) family] -0.573 0.438
140 250433_at AT5G10400 H3.1, histone 3.1 -0.549 0.253
141 245196_at AT1G67750 [Pectate lyase family protein] -0.547 0.482
142 264434_at AT1G10340 [Ankyrin repeat family protein] -0.545 -0.287
143 254264_at AT4G23510 [Disease resistance protein (TIR-NBS-LRR class) family] -0.536 -0.218
144 256684_at AT3G32040 [Terpenoid synthases superfamily protein] -0.532 -0.472
145 250942_at AT5G03350 [Legume lectin family protein] -0.529 -0.419
146 247988_at AT5G56910 [Proteinase inhibitor I25, cystatin, conserved region] -0.521 0.125
147 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 -0.519 -0.674
148 253132_at AT4G35580 CBNAC, calmodulin-binding NAC protein, NTL9, NAC transcription factor-like 9 -0.514 0.045
149 251934_at AT3G54070 [Ankyrin repeat family protein] -0.512 -0.663