4.0:Information of module
NFA8 roots 2hr KNO3 nitrogen
In comparison with Light help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0080167 response to karrikin BP 6.104e-04
GO:0010583 response to cyclopentenone BP 2.501e-03
GO:1901700 response to oxygen-containing compound BP 3.229e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 3.666e-05
GO:0051716 cellular response to stimulus BP 1.655e-04
GO:0007154 cell communication BP 1.713e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
NFA8 roots 2hr KNO3 nitrogen		 Log2 signal ratio
Light
1 248122_at AT5G54700 [Ankyrin repeat family protein] 1.273 -0.001
2 265052_at AT1G51990 [O-methyltransferase family protein] 1.152 0.064
3 244965_at ATCG00590 ORF31 0.991 0.019
4 247717_at AT5G59320 LTP3, lipid transfer protein 3 0.832 0.060
5 255138_at AT4G08380 [Proline-rich extensin-like family protein] 0.811 0.025
6 244970_at ATCG00660 RPL20, ribosomal protein L20 0.798 -0.010
7 265732_at AT2G01300 unknown 0.741 0.305
8 249635_at AT5G36870 ATGSL09, glucan synthase-like 9, atgsl9, gsl09, GSL09, glucan synthase-like 9 0.741 -0.093
9 249259_at AT5G41660 unknown 0.689 0.044
10 261474_at AT1G14540 PER4, peroxidase 4 0.675 0.686
11 261021_at AT1G26380 [FAD-binding Berberine family protein] 0.672 0.045
12 265539_at AT2G15830 unknown 0.655 0.006
13 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.646 0.012
14 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.612 0.065
15 260893_at AT1G29180 [Cysteine/Histidine-rich C1 domain family protein] 0.606 -0.061
16 265483_at AT2G15790 CYP40, CYCLOPHILIN 40, SQN, SQUINT 0.605 -0.059
17 256138_at AT1G48670 [auxin-responsive GH3 family protein] 0.599 -0.059
18 250135_at AT5G15360 unknown 0.599 0.072
19 246406_at AT1G57650 [ATP binding] 0.585 0.048
20 257061_at AT3G18250 [Putative membrane lipoprotein] 0.576 0.033
21 244921_s_at ATMG01000 ORF114 0.574 0.080
22 261581_at AT1G01140 CIPK9, CBL-interacting protein kinase 9, PKS6, PROTEIN KINASE 6, SnRK3.12, SNF1-RELATED PROTEIN KINASE 3.12 0.574 -0.057
23 256762_at AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 0.570 0.216
24 260706_at AT1G32350 AOX1D, alternative oxidase 1D 0.564 0.221
25 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] 0.558 -0.036
26 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 0.541 -0.164
27 248164_at AT5G54490 PBP1, pinoid-binding protein 1 0.535 0.258
28 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 0.526 -0.014
29 264891_at AT1G23200 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.509 0.025
30 251194_at AT3G62920 unknown 0.502 0.015
31 253532_at AT4G31570 unknown 0.493 0.014
32 262421_at AT1G50290 unknown 0.491 -0.008
33 254350_at AT4G22280 [F-box/RNI-like superfamily protein] 0.486 -0.003
34 253044_at AT4G37290 unknown 0.485 -0.003
35 255794_at AT2G33480 ANAC041, NAC domain containing protein 41, NAC041, NAC domain containing protein 41 0.485 -0.074
36 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 0.483 -0.046
37 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.481 -0.010
38 253796_at AT4G28460 unknown 0.470 0.342
39 245875_at AT1G26240 [Proline-rich extensin-like family protein] 0.470 0.090
40 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 0.460 0.009
41 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.459 0.033
42 266756_at AT2G46950 CYP709B2, cytochrome P450, family 709, subfamily B, polypeptide 2 0.455 0.057
43 256859_at AT3G22940 [F-box associated ubiquitination effector family protein] 0.452 -0.025
44 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 0.449 0.292
45 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.436 -0.030
46 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.428 0.888
47 259992_at AT1G67970 AT-HSFA8, HSFA8, heat shock transcription factor A8 0.425 0.110
48 244950_at ATMG00160 COX2, cytochrome oxidase 2 0.424 0.010
49 244967_at ATCG00630 PSAJ 0.419 -0.030
50 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.418 -0.042
51 257447_at AT2G04230 [FBD, F-box and Leucine Rich Repeat domains containing protein] 0.404 0.019
52 253052_at AT4G37310 CYP81H1, cytochrome P450, family 81, subfamily H, polypeptide 1 0.400 0.037
53 250975_at AT5G03050 unknown 0.389 -0.075
54 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.388 -0.005
55 259979_at AT1G76600 unknown 0.376 0.437
56 248140_at AT5G54980 [Uncharacterised protein family (UPF0497)] 0.372 -0.036
57 255824_at AT2G40530 unknown 0.371 -0.023
58 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 0.368 -0.029
59 257332_at ATMG01350 ORF145C 0.366 0.018
60 254221_at AT4G23820 [Pectin lyase-like superfamily protein] 0.365 -0.016
61 264393_at AT1G11880 [transferases, transferring hexosyl groups] 0.363 -0.129
62 260261_at AT1G68450 PDE337, PIGMENT DEFECTIVE 337 0.363 0.221
63 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.360 0.100
64 253663_at AT4G30160 ATVLN4, VLN4, villin 4 0.359 0.012
65 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 0.357 0.002
66 245310_at AT4G13950 RALFL31, ralf-like 31 0.353 0.001
67 250348_at AT5G11990 [proline-rich family protein] 0.349 -0.053
68 247487_at AT5G62150 [peptidoglycan-binding LysM domain-containing protein] 0.349 0.132
69 264911_at AT1G60690 [NAD(P)-linked oxidoreductase superfamily protein] 0.348 -0.021
70 264909_at AT2G17300 unknown 0.346 0.132
71 247319_at AT5G64050 ATERS, ERS, glutamate tRNA synthetase, OVA3, OVULE ABORTION 3 0.344 0.082
72 255257_at AT4G05050 UBQ11, ubiquitin 11 -1.660 -0.006
73 266851_at AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 -1.358 0.038
74 249812_at AT5G23830 [MD-2-related lipid recognition domain-containing protein] -1.276 -0.039
75 264282_at AT1G61840 [Cysteine/Histidine-rich C1 domain family protein] -1.243 0.139
76 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.226 -0.002
77 248944_at AT5G45500 [RNI-like superfamily protein] -1.218 0.008
78 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] -1.173 -0.006
79 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] -1.048 0.077
80 247729_at AT5G59530 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.015 0.033
81 252510_at AT3G46270 [receptor protein kinase-related] -1.006 0.146
82 266307_at AT2G27000 CYP705A8, cytochrome P450, family 705, subfamily A, polypeptide 8 -0.997 -0.009
83 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] -0.973 0.044
84 245674_at AT1G56680 [Chitinase family protein] -0.972 -0.015
85 252530_at AT3G46500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.932 0.050
86 265831_at AT2G14460 unknown -0.921 -0.028
87 246393_at AT1G58150 unknown -0.916 -0.028
88 250142_at AT5G14650 [Pectin lyase-like superfamily protein] -0.900 -0.026
89 252196_at AT3G50200 unknown -0.899 -0.046
90 263276_at AT2G14100 CYP705A13, cytochrome P450, family 705, subfamily A, polypeptide 13 -0.889 0.092
91 254979_at AT4G10550 [Subtilase family protein] -0.874 -0.004
92 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] -0.874 -0.058
93 261091_at AT1G07550 [Leucine-rich repeat protein kinase family protein] -0.839 -0.043
94 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] -0.831 0.015
95 266176_at AT2G02250 AtPP2-B2, phloem protein 2-B2, PP2-B2, phloem protein 2-B2 -0.825 0.052
96 262177_at AT1G74710 ATICS1, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ICS1, ISOCHORISMATE SYNTHASE 1, SID2, SALICYLIC ACID INDUCTION DEFICIENT 2 -0.747 -0.010
97 252403_at AT3G48080 [alpha/beta-Hydrolases superfamily protein] -0.745 0.123
98 259388_at AT1G13420 ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ST4B, sulfotransferase 4B -0.723 -0.043
99 249245_at AT5G42280 [Cysteine/Histidine-rich C1 domain family protein] -0.720 0.014
100 249617_at AT5G37450 [Leucine-rich repeat protein kinase family protein] -0.711 0.049
101 249724_at AT5G35450 [Disease resistance protein (CC-NBS-LRR class) family] -0.705 -0.016
102 248048_at AT5G56080 ATNAS2, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, NAS2, nicotianamine synthase 2 -0.700 0.032
103 265124_at AT1G55430 [Cysteine/Histidine-rich C1 domain family protein] -0.692 -0.010
104 247727_at AT5G59490 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.688 0.078
105 263023_at AT1G23960 unknown -0.684 -0.034
106 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] -0.683 -0.033
107 265530_at AT2G06050 AtOPR3, DDE1, DELAYED DEHISCENCE 1, OPR3, oxophytodienoate-reductase 3 -0.683 0.120
108 254326_at AT4G22610 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.680 -0.030
109 259184_at AT3G01520 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.661 -0.010
110 249186_at AT5G43040 [Cysteine/Histidine-rich C1 domain family protein] -0.657 0.233
111 252240_at AT3G50010 [Cysteine/Histidine-rich C1 domain family protein] -0.657 0.005
112 246943_at AT5G25440 [Protein kinase superfamily protein] -0.655 -0.000
113 258027_at AT3G19515 unknown -0.652 -0.008
114 249058_at AT5G44510 TAO1, target of AVRB operation1 -0.649 -0.051
115 249185_at AT5G43030 [Cysteine/Histidine-rich C1 domain family protein] -0.643 -0.032
116 246374_at AT1G51840 [protein kinase-related] -0.633 -0.004
117 264759_at AT1G61480 [S-locus lectin protein kinase family protein] -0.630 -0.063
118 245456_at AT4G16950 RPP5, RECOGNITION OF PERONOSPORA PARASITICA 5 -0.623 -0.048
119 254510_at AT4G20210 TPS08, terpene synthase 8 -0.608 0.042
120 256021_at AT1G58270 ZW9 -0.606 -0.007
121 250832_at AT5G04950 ATNAS1, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, NAS1, nicotianamine synthase 1 -0.602 0.003
122 253132_at AT4G35580 CBNAC, calmodulin-binding NAC protein, NTL9, NAC transcription factor-like 9 -0.600 -0.046
123 255059_at AT4G09420 [Disease resistance protein (TIR-NBS class)] -0.597 0.126
124 249096_at AT5G43910 [pfkB-like carbohydrate kinase family protein] -0.596 -0.083
125 257432_at AT2G21850 [Cysteine/Histidine-rich C1 domain family protein] -0.592 -0.017
126 249562_at AT5G38350 [Disease resistance protein (NBS-LRR class) family] -0.581 0.155
127 255484_at AT4G02540 [Cysteine/Histidine-rich C1 domain family protein] -0.563 0.109
128 250702_at AT5G06730 [Peroxidase superfamily protein] -0.560 0.118
129 256774_at AT3G13760 [Cysteine/Histidine-rich C1 domain family protein] -0.551 -0.011
130 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 -0.546 0.027
131 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase -0.520 0.056
132 252834_at AT4G40070 [RING/U-box superfamily protein] -0.520 0.035
133 263571_at AT2G17050 [disease resistance protein (TIR-NBS-LRR class), putative] -0.509 -0.042
134 260831_at AT1G06830 [Glutaredoxin family protein] -0.507 -0.046
135 246478_at AT5G15980 [Pentatricopeptide repeat (PPR) superfamily protein] -0.503 -0.040
136 246992_at AT5G67430 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.498 -0.024
137 252703_at AT3G43740 [Leucine-rich repeat (LRR) family protein] -0.497 -0.022
138 260796_at AT1G78360 ATGSTU21, glutathione S-transferase TAU 21, GSTU21, glutathione S-transferase TAU 21 -0.496 0.034
139 256162_at AT1G55390 [Cysteine/Histidine-rich C1 domain family protein] -0.488 0.388
140 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.488 0.074
141 253097_at AT4G37320 CYP81D5, cytochrome P450, family 81, subfamily D, polypeptide 5 -0.487 -0.053