4.0:Information of module
NFA8 roots 2hr KNO3 nitrogen
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0080167 response to karrikin BP 6.104e-04
GO:0010583 response to cyclopentenone BP 2.501e-03
GO:1901700 response to oxygen-containing compound BP 3.229e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 3.666e-05
GO:0051716 cellular response to stimulus BP 1.655e-04
GO:0007154 cell communication BP 1.713e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
NFA8 roots 2hr KNO3 nitrogen		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 248122_at AT5G54700 [Ankyrin repeat family protein] 1.273 -0.883
2 265052_at AT1G51990 [O-methyltransferase family protein] 1.152 -0.336
3 244965_at ATCG00590 ORF31 0.991 -1.108
4 247717_at AT5G59320 LTP3, lipid transfer protein 3 0.832 0.012
5 255138_at AT4G08380 [Proline-rich extensin-like family protein] 0.811 -1.677
6 244970_at ATCG00660 RPL20, ribosomal protein L20 0.798 -0.038
7 265732_at AT2G01300 unknown 0.741 -0.594
8 249635_at AT5G36870 ATGSL09, glucan synthase-like 9, atgsl9, gsl09, GSL09, glucan synthase-like 9 0.741 0.325
9 249259_at AT5G41660 unknown 0.689 0.113
10 261474_at AT1G14540 PER4, peroxidase 4 0.675 0.106
11 261021_at AT1G26380 [FAD-binding Berberine family protein] 0.672 -0.286
12 265539_at AT2G15830 unknown 0.655 -0.364
13 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.646 -0.352
14 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.612 -0.509
15 260893_at AT1G29180 [Cysteine/Histidine-rich C1 domain family protein] 0.606 -0.973
16 265483_at AT2G15790 CYP40, CYCLOPHILIN 40, SQN, SQUINT 0.605 -0.166
17 256138_at AT1G48670 [auxin-responsive GH3 family protein] 0.599 -0.904
18 250135_at AT5G15360 unknown 0.599 -0.502
19 246406_at AT1G57650 [ATP binding] 0.585 -0.828
20 257061_at AT3G18250 [Putative membrane lipoprotein] 0.576 -0.034
21 244921_s_at ATMG01000 ORF114 0.574 -0.503
22 261581_at AT1G01140 CIPK9, CBL-interacting protein kinase 9, PKS6, PROTEIN KINASE 6, SnRK3.12, SNF1-RELATED PROTEIN KINASE 3.12 0.574 0.324
23 256762_at AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 0.570 -0.163
24 260706_at AT1G32350 AOX1D, alternative oxidase 1D 0.564 -0.991
25 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] 0.558 0.725
26 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 0.541 -0.955
27 248164_at AT5G54490 PBP1, pinoid-binding protein 1 0.535 -0.355
28 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 0.526 0.210
29 264891_at AT1G23200 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.509 -0.330
30 251194_at AT3G62920 unknown 0.502 -0.111
31 253532_at AT4G31570 unknown 0.493 -0.486
32 262421_at AT1G50290 unknown 0.491 0.230
33 254350_at AT4G22280 [F-box/RNI-like superfamily protein] 0.486 -0.345
34 253044_at AT4G37290 unknown 0.485 -0.520
35 255794_at AT2G33480 ANAC041, NAC domain containing protein 41, NAC041, NAC domain containing protein 41 0.485 -0.336
36 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 0.483 -0.698
37 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.481 0.918
38 253796_at AT4G28460 unknown 0.470 0.369
39 245875_at AT1G26240 [Proline-rich extensin-like family protein] 0.470 0.007
40 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 0.460 0.214
41 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.459 -0.865
42 266756_at AT2G46950 CYP709B2, cytochrome P450, family 709, subfamily B, polypeptide 2 0.455 0.832
43 256859_at AT3G22940 [F-box associated ubiquitination effector family protein] 0.452 -0.603
44 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 0.449 -1.057
45 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.436 0.020
46 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.428 1.077
47 259992_at AT1G67970 AT-HSFA8, HSFA8, heat shock transcription factor A8 0.425 0.636
48 244950_at ATMG00160 COX2, cytochrome oxidase 2 0.424 -0.031
49 244967_at ATCG00630 PSAJ 0.419 0.379
50 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.418 1.369
51 257447_at AT2G04230 [FBD, F-box and Leucine Rich Repeat domains containing protein] 0.404 -0.014
52 253052_at AT4G37310 CYP81H1, cytochrome P450, family 81, subfamily H, polypeptide 1 0.400 -0.446
53 250975_at AT5G03050 unknown 0.389 -0.083
54 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.388 -0.667
55 259979_at AT1G76600 unknown 0.376 -0.501
56 248140_at AT5G54980 [Uncharacterised protein family (UPF0497)] 0.372 1.229
57 255824_at AT2G40530 unknown 0.371 -0.057
58 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 0.368 -0.206
59 257332_at ATMG01350 ORF145C 0.366 -0.887
60 254221_at AT4G23820 [Pectin lyase-like superfamily protein] 0.365 1.195
61 264393_at AT1G11880 [transferases, transferring hexosyl groups] 0.363 0.066
62 260261_at AT1G68450 PDE337, PIGMENT DEFECTIVE 337 0.363 -0.653
63 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.360 0.252
64 253663_at AT4G30160 ATVLN4, VLN4, villin 4 0.359 0.479
65 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 0.357 -0.952
66 245310_at AT4G13950 RALFL31, ralf-like 31 0.353 -0.172
67 250348_at AT5G11990 [proline-rich family protein] 0.349 -0.473
68 247487_at AT5G62150 [peptidoglycan-binding LysM domain-containing protein] 0.349 -0.455
69 264911_at AT1G60690 [NAD(P)-linked oxidoreductase superfamily protein] 0.348 -1.080
70 264909_at AT2G17300 unknown 0.346 -0.794
71 247319_at AT5G64050 ATERS, ERS, glutamate tRNA synthetase, OVA3, OVULE ABORTION 3 0.344 0.235
72 255257_at AT4G05050 UBQ11, ubiquitin 11 -1.660 0.861
73 266851_at AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 -1.358 0.213
74 249812_at AT5G23830 [MD-2-related lipid recognition domain-containing protein] -1.276 1.210
75 264282_at AT1G61840 [Cysteine/Histidine-rich C1 domain family protein] -1.243 -0.195
76 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.226 0.747
77 248944_at AT5G45500 [RNI-like superfamily protein] -1.218 0.733
78 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] -1.173 -0.893
79 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] -1.048 0.044
80 247729_at AT5G59530 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.015 -1.328
81 252510_at AT3G46270 [receptor protein kinase-related] -1.006 -1.057
82 266307_at AT2G27000 CYP705A8, cytochrome P450, family 705, subfamily A, polypeptide 8 -0.997 -0.846
83 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] -0.973 -0.783
84 245674_at AT1G56680 [Chitinase family protein] -0.972 0.839
85 252530_at AT3G46500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.932 -0.548
86 265831_at AT2G14460 unknown -0.921 0.822
87 246393_at AT1G58150 unknown -0.916 -0.038
88 250142_at AT5G14650 [Pectin lyase-like superfamily protein] -0.900 -0.568
89 252196_at AT3G50200 unknown -0.899 -0.490
90 263276_at AT2G14100 CYP705A13, cytochrome P450, family 705, subfamily A, polypeptide 13 -0.889 1.255
91 254979_at AT4G10550 [Subtilase family protein] -0.874 -0.327
92 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] -0.874 -1.171
93 261091_at AT1G07550 [Leucine-rich repeat protein kinase family protein] -0.839 -1.036
94 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] -0.831 -0.389
95 266176_at AT2G02250 AtPP2-B2, phloem protein 2-B2, PP2-B2, phloem protein 2-B2 -0.825 -0.584
96 262177_at AT1G74710 ATICS1, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ICS1, ISOCHORISMATE SYNTHASE 1, SID2, SALICYLIC ACID INDUCTION DEFICIENT 2 -0.747 -0.197
97 252403_at AT3G48080 [alpha/beta-Hydrolases superfamily protein] -0.745 -0.465
98 259388_at AT1G13420 ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ST4B, sulfotransferase 4B -0.723 -0.610
99 249245_at AT5G42280 [Cysteine/Histidine-rich C1 domain family protein] -0.720 0.380
100 249617_at AT5G37450 [Leucine-rich repeat protein kinase family protein] -0.711 -0.801
101 249724_at AT5G35450 [Disease resistance protein (CC-NBS-LRR class) family] -0.705 0.033
102 248048_at AT5G56080 ATNAS2, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, NAS2, nicotianamine synthase 2 -0.700 -0.490
103 265124_at AT1G55430 [Cysteine/Histidine-rich C1 domain family protein] -0.692 -0.670
104 247727_at AT5G59490 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.688 -0.235
105 263023_at AT1G23960 unknown -0.684 0.282
106 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] -0.683 0.349
107 265530_at AT2G06050 AtOPR3, DDE1, DELAYED DEHISCENCE 1, OPR3, oxophytodienoate-reductase 3 -0.683 0.918
108 254326_at AT4G22610 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.680 -0.945
109 259184_at AT3G01520 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.661 0.319
110 249186_at AT5G43040 [Cysteine/Histidine-rich C1 domain family protein] -0.657 -0.182
111 252240_at AT3G50010 [Cysteine/Histidine-rich C1 domain family protein] -0.657 -0.849
112 246943_at AT5G25440 [Protein kinase superfamily protein] -0.655 -0.683
113 258027_at AT3G19515 unknown -0.652 0.451
114 249058_at AT5G44510 TAO1, target of AVRB operation1 -0.649 -0.914
115 249185_at AT5G43030 [Cysteine/Histidine-rich C1 domain family protein] -0.643 0.230
116 246374_at AT1G51840 [protein kinase-related] -0.633 -0.127
117 264759_at AT1G61480 [S-locus lectin protein kinase family protein] -0.630 -0.522
118 245456_at AT4G16950 RPP5, RECOGNITION OF PERONOSPORA PARASITICA 5 -0.623 0.261
119 254510_at AT4G20210 TPS08, terpene synthase 8 -0.608 -0.219
120 256021_at AT1G58270 ZW9 -0.606 0.398
121 250832_at AT5G04950 ATNAS1, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, NAS1, nicotianamine synthase 1 -0.602 -0.309
122 253132_at AT4G35580 CBNAC, calmodulin-binding NAC protein, NTL9, NAC transcription factor-like 9 -0.600 0.045
123 255059_at AT4G09420 [Disease resistance protein (TIR-NBS class)] -0.597 -0.127
124 249096_at AT5G43910 [pfkB-like carbohydrate kinase family protein] -0.596 -0.775
125 257432_at AT2G21850 [Cysteine/Histidine-rich C1 domain family protein] -0.592 0.324
126 249562_at AT5G38350 [Disease resistance protein (NBS-LRR class) family] -0.581 -0.462
127 255484_at AT4G02540 [Cysteine/Histidine-rich C1 domain family protein] -0.563 1.436
128 250702_at AT5G06730 [Peroxidase superfamily protein] -0.560 -1.114
129 256774_at AT3G13760 [Cysteine/Histidine-rich C1 domain family protein] -0.551 0.644
130 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 -0.546 -0.147
131 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase -0.520 -0.319
132 252834_at AT4G40070 [RING/U-box superfamily protein] -0.520 0.335
133 263571_at AT2G17050 [disease resistance protein (TIR-NBS-LRR class), putative] -0.509 -0.682
134 260831_at AT1G06830 [Glutaredoxin family protein] -0.507 -0.717
135 246478_at AT5G15980 [Pentatricopeptide repeat (PPR) superfamily protein] -0.503 0.163
136 246992_at AT5G67430 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.498 -0.267
137 252703_at AT3G43740 [Leucine-rich repeat (LRR) family protein] -0.497 0.935
138 260796_at AT1G78360 ATGSTU21, glutathione S-transferase TAU 21, GSTU21, glutathione S-transferase TAU 21 -0.496 -0.711
139 256162_at AT1G55390 [Cysteine/Histidine-rich C1 domain family protein] -0.488 -0.142
140 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.488 0.510
141 253097_at AT4G37320 CYP81D5, cytochrome P450, family 81, subfamily D, polypeptide 5 -0.487 -0.412