4.0:Information of module
NFA8 roots 2hr KNO3 nitrogen
In comparison with 2hr continuous KNO3 and MSX PeR cell help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0080167 response to karrikin BP 6.104e-04
GO:0010583 response to cyclopentenone BP 2.501e-03
GO:1901700 response to oxygen-containing compound BP 3.229e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 3.666e-05
GO:0051716 cellular response to stimulus BP 1.655e-04
GO:0007154 cell communication BP 1.713e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
NFA8 roots 2hr KNO3 nitrogen		 Log2 signal ratio
2hr continuous KNO3 and MSX PeR cell
1 248122_at AT5G54700 [Ankyrin repeat family protein] 1.273 -0.065
2 265052_at AT1G51990 [O-methyltransferase family protein] 1.152 -0.006
3 244965_at ATCG00590 ORF31 0.991 -0.019
4 247717_at AT5G59320 LTP3, lipid transfer protein 3 0.832 0.182
5 255138_at AT4G08380 [Proline-rich extensin-like family protein] 0.811 0.208
6 244970_at ATCG00660 RPL20, ribosomal protein L20 0.798 -0.072
7 265732_at AT2G01300 unknown 0.741 0.053
8 249635_at AT5G36870 ATGSL09, glucan synthase-like 9, atgsl9, gsl09, GSL09, glucan synthase-like 9 0.741 0.008
9 249259_at AT5G41660 unknown 0.689 -0.047
10 261474_at AT1G14540 PER4, peroxidase 4 0.675 0.062
11 261021_at AT1G26380 [FAD-binding Berberine family protein] 0.672 0.050
12 265539_at AT2G15830 unknown 0.655 0.112
13 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.646 -0.039
14 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.612 -0.093
15 260893_at AT1G29180 [Cysteine/Histidine-rich C1 domain family protein] 0.606 -0.013
16 265483_at AT2G15790 CYP40, CYCLOPHILIN 40, SQN, SQUINT 0.605 -0.044
17 256138_at AT1G48670 [auxin-responsive GH3 family protein] 0.599 0.047
18 250135_at AT5G15360 unknown 0.599 -0.000
19 246406_at AT1G57650 [ATP binding] 0.585 -0.073
20 257061_at AT3G18250 [Putative membrane lipoprotein] 0.576 0.077
21 244921_s_at ATMG01000 ORF114 0.574 -0.093
22 261581_at AT1G01140 CIPK9, CBL-interacting protein kinase 9, PKS6, PROTEIN KINASE 6, SnRK3.12, SNF1-RELATED PROTEIN KINASE 3.12 0.574 -0.090
23 256762_at AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 0.570 -0.099
24 260706_at AT1G32350 AOX1D, alternative oxidase 1D 0.564 -0.003
25 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] 0.558 -0.199
26 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 0.541 -0.021
27 248164_at AT5G54490 PBP1, pinoid-binding protein 1 0.535 -0.016
28 264507_at AT1G09415 NIMIN-3, NIM1-interacting 3 0.526 -0.204
29 264891_at AT1G23200 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.509 -0.030
30 251194_at AT3G62920 unknown 0.502 0.009
31 253532_at AT4G31570 unknown 0.493 0.019
32 262421_at AT1G50290 unknown 0.491 0.062
33 254350_at AT4G22280 [F-box/RNI-like superfamily protein] 0.486 -0.061
34 253044_at AT4G37290 unknown 0.485 -0.027
35 255794_at AT2G33480 ANAC041, NAC domain containing protein 41, NAC041, NAC domain containing protein 41 0.485 -0.060
36 261913_at AT1G65860 FMO GS-OX1, flavin-monooxygenase glucosinolate S-oxygenase 1 0.483 0.033
37 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.481 0.005
38 253796_at AT4G28460 unknown 0.470 0.112
39 245875_at AT1G26240 [Proline-rich extensin-like family protein] 0.470 0.238
40 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 0.460 -0.116
41 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.459 0.031
42 266756_at AT2G46950 CYP709B2, cytochrome P450, family 709, subfamily B, polypeptide 2 0.455 -0.038
43 256859_at AT3G22940 [F-box associated ubiquitination effector family protein] 0.452 -0.027
44 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 0.449 0.010
45 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.436 -0.060
46 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.428 0.010
47 259992_at AT1G67970 AT-HSFA8, HSFA8, heat shock transcription factor A8 0.425 0.070
48 244950_at ATMG00160 COX2, cytochrome oxidase 2 0.424 -0.146
49 244967_at ATCG00630 PSAJ 0.419 -0.156
50 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.418 -0.002
51 257447_at AT2G04230 [FBD, F-box and Leucine Rich Repeat domains containing protein] 0.404 -0.047
52 253052_at AT4G37310 CYP81H1, cytochrome P450, family 81, subfamily H, polypeptide 1 0.400 0.009
53 250975_at AT5G03050 unknown 0.389 -0.020
54 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.388 -0.150
55 259979_at AT1G76600 unknown 0.376 0.024
56 248140_at AT5G54980 [Uncharacterised protein family (UPF0497)] 0.372 0.021
57 255824_at AT2G40530 unknown 0.371 0.028
58 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 0.368 0.019
59 257332_at ATMG01350 ORF145C 0.366 -0.041
60 254221_at AT4G23820 [Pectin lyase-like superfamily protein] 0.365 -0.023
61 264393_at AT1G11880 [transferases, transferring hexosyl groups] 0.363 -0.014
62 260261_at AT1G68450 PDE337, PIGMENT DEFECTIVE 337 0.363 -0.003
63 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.360 0.011
64 253663_at AT4G30160 ATVLN4, VLN4, villin 4 0.359 -0.081
65 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 0.357 -0.044
66 245310_at AT4G13950 RALFL31, ralf-like 31 0.353 -0.042
67 250348_at AT5G11990 [proline-rich family protein] 0.349 -0.077
68 247487_at AT5G62150 [peptidoglycan-binding LysM domain-containing protein] 0.349 0.128
69 264911_at AT1G60690 [NAD(P)-linked oxidoreductase superfamily protein] 0.348 0.065
70 264909_at AT2G17300 unknown 0.346 -0.239
71 247319_at AT5G64050 ATERS, ERS, glutamate tRNA synthetase, OVA3, OVULE ABORTION 3 0.344 -0.091
72 255257_at AT4G05050 UBQ11, ubiquitin 11 -1.660 -0.037
73 266851_at AT2G26820 ATPP2-A3, phloem protein 2-A3, PP2-A3, phloem protein 2-A3 -1.358 0.423
74 249812_at AT5G23830 [MD-2-related lipid recognition domain-containing protein] -1.276 -0.120
75 264282_at AT1G61840 [Cysteine/Histidine-rich C1 domain family protein] -1.243 0.097
76 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -1.226 -0.309
77 248944_at AT5G45500 [RNI-like superfamily protein] -1.218 0.038
78 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] -1.173 0.015
79 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] -1.048 -0.016
80 247729_at AT5G59530 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.015 -0.081
81 252510_at AT3G46270 [receptor protein kinase-related] -1.006 0.022
82 266307_at AT2G27000 CYP705A8, cytochrome P450, family 705, subfamily A, polypeptide 8 -0.997 0.004
83 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] -0.973 0.019
84 245674_at AT1G56680 [Chitinase family protein] -0.972 -0.035
85 252530_at AT3G46500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.932 0.006
86 265831_at AT2G14460 unknown -0.921 0.097
87 246393_at AT1G58150 unknown -0.916 0.049
88 250142_at AT5G14650 [Pectin lyase-like superfamily protein] -0.900 0.053
89 252196_at AT3G50200 unknown -0.899 0.056
90 263276_at AT2G14100 CYP705A13, cytochrome P450, family 705, subfamily A, polypeptide 13 -0.889 -0.055
91 254979_at AT4G10550 [Subtilase family protein] -0.874 -0.119
92 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] -0.874 -0.314
93 261091_at AT1G07550 [Leucine-rich repeat protein kinase family protein] -0.839 -0.093
94 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] -0.831 -0.046
95 266176_at AT2G02250 AtPP2-B2, phloem protein 2-B2, PP2-B2, phloem protein 2-B2 -0.825 0.179
96 262177_at AT1G74710 ATICS1, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ICS1, ISOCHORISMATE SYNTHASE 1, SID2, SALICYLIC ACID INDUCTION DEFICIENT 2 -0.747 0.065
97 252403_at AT3G48080 [alpha/beta-Hydrolases superfamily protein] -0.745 0.071
98 259388_at AT1G13420 ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ST4B, sulfotransferase 4B -0.723 0.058
99 249245_at AT5G42280 [Cysteine/Histidine-rich C1 domain family protein] -0.720 0.111
100 249617_at AT5G37450 [Leucine-rich repeat protein kinase family protein] -0.711 -0.043
101 249724_at AT5G35450 [Disease resistance protein (CC-NBS-LRR class) family] -0.705 -0.052
102 248048_at AT5G56080 ATNAS2, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, NAS2, nicotianamine synthase 2 -0.700 -0.000
103 265124_at AT1G55430 [Cysteine/Histidine-rich C1 domain family protein] -0.692 -0.118
104 247727_at AT5G59490 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.688 0.076
105 263023_at AT1G23960 unknown -0.684 0.022
106 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] -0.683 -0.110
107 265530_at AT2G06050 AtOPR3, DDE1, DELAYED DEHISCENCE 1, OPR3, oxophytodienoate-reductase 3 -0.683 0.016
108 254326_at AT4G22610 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.680 0.017
109 259184_at AT3G01520 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.661 -0.062
110 249186_at AT5G43040 [Cysteine/Histidine-rich C1 domain family protein] -0.657 0.008
111 252240_at AT3G50010 [Cysteine/Histidine-rich C1 domain family protein] -0.657 0.075
112 246943_at AT5G25440 [Protein kinase superfamily protein] -0.655 -0.063
113 258027_at AT3G19515 unknown -0.652 -0.042
114 249058_at AT5G44510 TAO1, target of AVRB operation1 -0.649 0.012
115 249185_at AT5G43030 [Cysteine/Histidine-rich C1 domain family protein] -0.643 -0.043
116 246374_at AT1G51840 [protein kinase-related] -0.633 -0.002
117 264759_at AT1G61480 [S-locus lectin protein kinase family protein] -0.630 0.125
118 245456_at AT4G16950 RPP5, RECOGNITION OF PERONOSPORA PARASITICA 5 -0.623 0.097
119 254510_at AT4G20210 TPS08, terpene synthase 8 -0.608 0.083
120 256021_at AT1G58270 ZW9 -0.606 -0.017
121 250832_at AT5G04950 ATNAS1, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, NAS1, nicotianamine synthase 1 -0.602 -0.020
122 253132_at AT4G35580 CBNAC, calmodulin-binding NAC protein, NTL9, NAC transcription factor-like 9 -0.600 0.047
123 255059_at AT4G09420 [Disease resistance protein (TIR-NBS class)] -0.597 0.041
124 249096_at AT5G43910 [pfkB-like carbohydrate kinase family protein] -0.596 0.125
125 257432_at AT2G21850 [Cysteine/Histidine-rich C1 domain family protein] -0.592 0.088
126 249562_at AT5G38350 [Disease resistance protein (NBS-LRR class) family] -0.581 0.014
127 255484_at AT4G02540 [Cysteine/Histidine-rich C1 domain family protein] -0.563 -0.038
128 250702_at AT5G06730 [Peroxidase superfamily protein] -0.560 0.124
129 256774_at AT3G13760 [Cysteine/Histidine-rich C1 domain family protein] -0.551 0.026
130 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 -0.546 -0.100
131 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase -0.520 -0.121
132 252834_at AT4G40070 [RING/U-box superfamily protein] -0.520 0.086
133 263571_at AT2G17050 [disease resistance protein (TIR-NBS-LRR class), putative] -0.509 0.020
134 260831_at AT1G06830 [Glutaredoxin family protein] -0.507 0.146
135 246478_at AT5G15980 [Pentatricopeptide repeat (PPR) superfamily protein] -0.503 0.146
136 246992_at AT5G67430 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.498 -0.222
137 252703_at AT3G43740 [Leucine-rich repeat (LRR) family protein] -0.497 -0.071
138 260796_at AT1G78360 ATGSTU21, glutathione S-transferase TAU 21, GSTU21, glutathione S-transferase TAU 21 -0.496 0.087
139 256162_at AT1G55390 [Cysteine/Histidine-rich C1 domain family protein] -0.488 0.028
140 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.488 -0.213
141 253097_at AT4G37320 CYP81D5, cytochrome P450, family 81, subfamily D, polypeptide 5 -0.487 0.019