4.0:Information of module
A. thaliana-A. lyrata hybrid
In comparison with AgNO3 3 h  help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0071281 cellular response to iron ion BP 6.434e-06
GO:0071241 cellular response to inorganic substance BP 1.450e-05
GO:0009250 glucan biosynthetic process BP 9.755e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 1.813e-25
GO:0006955 immune response BP 4.152e-25
GO:0045087 innate immune response BP 4.152e-25
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
A. thaliana-A. lyrata hybrid		 Log2 signal ratio
AgNO3 3 h
1 251677_at AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 1.294 0.133
2 256460_at AT1G36240 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 1.264 -0.162
3 245465_at AT4G16590 ATCSLA01, cellulose synthase-like A01, ATCSLA1, CELLULOSE SYNTHASE-LIKE A1, CSLA01, CSLA01, cellulose synthase-like A01 1.118 -0.075
4 248197_at AT5G54190 PORA, protochlorophyllide oxidoreductase A 1.092 -0.060
5 250773_at AT5G05430 [RNA-binding protein] 1.059 0.015
6 258370_at AT3G14395 unknown 0.933 -0.011
7 254699_at AT4G17990 unknown 0.907 0.089
8 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 0.852 -0.320
9 259054_at AT3G03480 CHAT, acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase 0.833 0.009
10 246273_at AT4G36700 [RmlC-like cupins superfamily protein] 0.811 0.212
11 260934_at AT1G45100 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.804 -0.059
12 255576_at AT4G01440 UMAMIT31, Usually multiple acids move in and out Transporters 31 0.780 -0.166
13 262212_at AT1G74890 ARR15, response regulator 15 0.765 -0.056
14 262978_at AT1G75780 TUB1, tubulin beta-1 chain 0.744 -0.321
15 249775_at AT5G24160 SQE6, squalene monoxygenase 6 0.736 0.443
16 267569_at AT2G30790 PSBP-2, photosystem II subunit P-2 0.732 -0.038
17 260930_at AT1G02620 [Ras-related small GTP-binding family protein] 0.725 -0.027
18 252677_at AT3G44320 AtNIT3, NITRILASE 3, NIT3, nitrilase 3 0.701 -0.036
19 245814_at AT1G49910 BUB3.2, BUB (BUDDING UNINHIBITED BY BENZYMIDAZOL) 3.2 0.685 -0.002
20 267355_at AT2G39900 WLIM2a, WLIM2a 0.665 -0.189
21 254785_at AT4G12730 FLA2, FASCICLIN-like arabinogalactan 2 0.647 -0.283
22 265405_at AT2G16750 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] 0.631 -0.027
23 248691_at AT5G48310 unknown 0.629 -0.055
24 264181_at AT1G65350 UBQ13, ubiquitin 13 0.613 -0.041
25 264240_at AT1G54820 [Protein kinase superfamily protein] 0.592 -0.354
26 257473_at AT1G33840 unknown 0.550 -0.068
27 253729_at AT4G29360 [O-Glycosyl hydrolases family 17 protein] 0.549 -0.136
28 262180_at AT1G78050 PGM, phosphoglycerate/bisphosphoglycerate mutase 0.547 0.215
29 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.543 0.056
30 249469_at AT5G39320 UDG4, UDP-glucose dehydrogenase 4 0.538 -0.128
31 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.524 0.432
32 250304_at AT5G12110 [Glutathione S-transferase, C-terminal-like] 0.519 -0.172
33 260151_at AT1G52910 unknown 0.506 -0.115
34 250783_at AT5G05260 CYP79A2, cytochrome p450 79a2 0.500 0.047
35 262354_at AT1G64200 VHA-E3, vacuolar H+-ATPase subunit E isoform 3 0.495 -0.125
36 245593_at AT4G14550 IAA14, indole-3-acetic acid inducible 14, SLR, SOLITARY ROOT 0.490 -0.121
37 263151_at AT1G54120 unknown 0.477 -0.172
38 248074_at AT5G55730 FLA1, FASCICLIN-like arabinogalactan 1 0.475 -0.190
39 262454_at AT1G11190 BFN1, bifunctional nuclease i, ENDO1, ENDONUCLEASE 1 0.471 -0.096
40 246231_at AT4G37080 unknown 0.469 -0.254
41 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 0.457 -0.171
42 256832_at AT3G22880 ARLIM15, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, ATDMC1, ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, DMC1, DISRUPTION OF MEIOTIC CONTROL 1 0.442 0.072
43 265057_at AT1G52140 unknown 0.441 -0.039
44 267425_at AT2G34810 [FAD-binding Berberine family protein] 0.440 -0.100
45 258122_at AT3G14570 ATGSL04, glucan synthase-like 4, atgsl4, gsl04, GSL04, glucan synthase-like 4 0.440 0.014
46 266891_at AT2G44690 ARAC9, Arabidopsis RAC-like 9, ATROP8, RHO-RELATED PROTEIN FROM PLANTS 8, ROP8, RHO-RELATED PROTEIN FROM PLANTS 8 0.427 -0.030
47 247625_at AT5G60200 TMO6, TARGET OF MONOPTEROS 6 0.410 0.069
48 261129_at AT1G04820 TOR2, TORTIFOLIA 2, TUA4, tubulin alpha-4 chain 0.400 -0.083
49 266913_at AT2G45890 ATROPGEF4, RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 4, GEF4, guanine exchange factor 4, RHS11, ROOT HAIR SPECIFIC 11, ROPGEF4, ROP (rho of plants) guanine nucleotide exchange factor 4 0.400 -0.327
50 253891_at AT4G27720 [Major facilitator superfamily protein] 0.399 -0.128
51 258241_at AT3G27650 LBD25, LOB domain-containing protein 25 0.398 -0.014
52 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 0.397 -0.150
53 261025_at AT1G01225 [NC domain-containing protein-related] 0.396 -0.041
54 267388_at AT2G44450 BGLU15, beta glucosidase 15 0.394 -0.160
55 251961_at AT3G53620 AtPPa4, pyrophosphorylase 4, PPa4, pyrophosphorylase 4 0.391 0.007
56 253010_at AT4G37750 ANT, AINTEGUMENTA, CKC, CKC1, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, DRG, DRAGON 0.390 -0.042
57 248924_at AT5G45960 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.384 -0.058
58 254059_at AT4G25200 ATHSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6, HSP23.6-MITO, mitochondrion-localized small heat shock protein 23.6 0.383 0.016
59 267402_at AT2G26180 IQD6, IQ-domain 6 0.378 -0.005
60 246512_at AT5G15630 COBL4, COBRA-LIKE4, IRX6, IRREGULAR XYLEM 6 0.377 -0.054
61 245113_at AT2G41660 MIZ1, mizu-kussei 1 0.374 -0.168
62 259736_at AT1G64390 AtGH9C2, glycosyl hydrolase 9C2, GH9C2, glycosyl hydrolase 9C2 0.372 -0.143
63 247441_at AT5G62710 [Leucine-rich repeat protein kinase family protein] 0.368 -0.041
64 248257_at AT5G53410 unknown 0.364 -0.010
65 253788_at AT4G28680 AtTYDC, TYDC, L-tyrosine decarboxylase, TYRDC, L-tyrosine decarboxylase, TYRDC1, L-TYROSINE DECARBOXYLASE 1 0.364 -0.089
66 254606_at AT4G19030 AT-NLM1, ATNLM1, NOD26-LIKE MAJOR INTRINSIC PROTEIN 1, NIP1;1, NOD26-LIKE INTRINSIC PROTEIN 1;1, NLM1, NOD26-like major intrinsic protein 1 0.362 -0.681
67 251547_at AT3G58860 [F-box/RNI-like superfamily protein] 0.361 -0.048
68 257772_at AT3G23080 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.359 -0.147
69 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] 0.358 -0.136
70 248681_at AT5G48900 [Pectin lyase-like superfamily protein] 0.356 -0.297
71 255417_at AT4G03190 AFB1, AUXIN SIGNALING F BOX PROTEIN 1, ATGRH1, GRH1, GRR1-like protein 1 0.356 -0.151
72 264466_at AT1G10380 [Putative membrane lipoprotein] 0.351 -0.060
73 250892_at AT5G03760 ATCSLA09, ATCSLA9, CSLA09, CSLA9, CELLULOSE SYNTHASE LIKE A9, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4 0.350 -0.119
74 257247_at AT3G24140 FMA, FAMA 0.346 -0.091
75 248457_at AT5G51420 [long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein] 0.345 0.031
76 248270_at AT5G53450 ORG1, OBP3-responsive gene 1 0.344 0.194
77 257342_at AT1G42365 [gypsy-like retrotransposon family (Athila), has a 9.0e-234 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] 0.344 -0.008
78 257647_at AT3G25805 unknown 0.342 -0.073
79 257480_at AT1G15640 unknown 0.341 0.066
80 256704_at AT3G30280 [HXXXD-type acyl-transferase family protein] 0.339 -0.027
81 267129_at AT2G23380 CLF, CURLY LEAF, ICU1, INCURVATA 1, SDG1, SETDOMAIN GROUP 1, SET1, SETDOMAIN 1 0.338 0.025
82 255577_at AT4G01410 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.335 -0.196
83 260335_at AT1G74000 SS3, strictosidine synthase 3 0.335 0.188
84 266905_at AT2G34560 AtCCP1, CCP1, conserved in ciliated species and in the land plants 1 0.333 -0.111
85 245524_at AT4G15920 AtSWEET17, SWEET17 0.333 0.086
86 253533_at AT4G31590 ATCSLC05, CELLULOSE-SYNTHASE LIKE C5, ATCSLC5, Cellulose-synthase-like C5, CSLC05, CELLULOSE-SYNTHASE LIKE C5, CSLC5, Cellulose-synthase-like C5 0.332 -0.141
87 256442_at AT3G10930 unknown -1.428 0.764
88 258947_at AT3G01830 [Calcium-binding EF-hand family protein] -1.414 0.552
89 259879_at AT1G76650 CML38, calmodulin-like 38 -1.324 0.504
90 251336_at AT3G61190 BAP1, BON association protein 1 -1.200 0.439
91 258606_at AT3G02840 [ARM repeat superfamily protein] -1.190 1.128
92 263182_at AT1G05575 unknown -1.123 0.972
93 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis -1.122 0.612
94 249197_at AT5G42380 CML37, calmodulin like 37 -1.119 0.508
95 254271_at AT4G23150 CRK7, cysteine-rich RLK (RECEPTOR-like protein kinase) 7 -1.109 0.206
96 260005_at AT1G67920 unknown -1.096 0.356
97 259559_at AT1G21240 WAK3, wall associated kinase 3 -1.091 0.052
98 255340_at AT4G04490 CRK36, cysteine-rich RLK (RECEPTOR-like protein kinase) 36 -1.062 0.046
99 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 -1.039 0.645
100 256522_at AT1G66160 ATCMPG1, CMPG1, CYS, MET, PRO, and GLY protein 1 -1.001 0.478
101 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] -0.995 0.552
102 248164_at AT5G54490 PBP1, pinoid-binding protein 1 -0.988 0.495
103 245193_at AT1G67810 SUFE2, sulfur E2 -0.986 0.565
104 249940_at AT5G22380 anac090, NAC domain containing protein 90, NAC090, NAC domain containing protein 90 -0.984 0.065
105 258203_at AT3G13950 unknown -0.984 0.317
106 247800_at AT5G58570 unknown -0.972 0.303
107 245711_at AT5G04340 C2H2, CZF2, COLD INDUCED ZINC FINGER PROTEIN 2, ZAT6, zinc finger of Arabidopsis thaliana 6 -0.971 0.568
108 259479_at AT1G19020 unknown -0.953 0.549
109 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G -0.946 0.787
110 267546_at AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 -0.942 0.580
111 257100_at AT3G25010 AtRLP41, receptor like protein 41, RLP41, receptor like protein 41 -0.940 0.221
112 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 -0.937 0.143
113 246777_at AT5G27420 ATL31, Arabidopsis toxicos en levadura 31, CNI1, carbon/nitrogen insensitive 1 -0.935 0.806
114 247071_at AT5G66640 DAR3, DA1-related protein 3 -0.928 0.343
115 252417_at AT3G47480 [Calcium-binding EF-hand family protein] -0.918 0.423
116 247314_at AT5G64000 ATSAL2, SAL2 -0.912 0.377
117 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 -0.911 0.033
118 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.902 0.932
119 260881_at AT1G21550 [Calcium-binding EF-hand family protein] -0.895 -0.047
120 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.885 -0.337
121 266658_at AT2G25735 unknown -0.884 0.924
122 266292_at AT2G29350 SAG13, senescence-associated gene 13 -0.883 0.106
123 252136_at AT3G50770 CML41, calmodulin-like 41 -0.882 0.522
124 254231_at AT4G23810 ATWRKY53, WRKY53 -0.855 0.645
125 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] -0.846 0.533
126 260568_at AT2G43570 CHI, chitinase, putative -0.840 0.495
127 264866_at AT1G24140 [Matrixin family protein] -0.839 0.614
128 267509_at AT2G45660 AGL20, AGAMOUS-like 20, ATSOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1, SOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1 -0.835 -0.046
129 255406_at AT4G03450 [Ankyrin repeat family protein] -0.831 0.215
130 259550_at AT1G35230 AGP5, arabinogalactan protein 5 -0.826 0.935
131 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.821 0.842
132 254074_at AT4G25490 ATCBF1, CBF1, C-repeat/DRE binding factor 1, DREB1B, DRE BINDING PROTEIN 1B -0.806 -0.000
133 262615_at AT1G13950 ATELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A-1, EIF-5A, EIF5A, EUKARYOTIC ELONGATION FACTOR 5A, ELF5A-1, eukaryotic elongation factor 5A-1 -0.804 -0.125
134 252977_at AT4G38560 [Arabidopsis phospholipase-like protein (PEARLI 4) family] -0.796 0.254
135 252098_at AT3G51330 [Eukaryotic aspartyl protease family protein] -0.770 -0.101
136 264434_at AT1G10340 [Ankyrin repeat family protein] -0.769 0.470
137 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 -0.767 0.159
138 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 -0.753 0.919
139 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 -0.750 0.960
140 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 -0.738 1.024
141 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 -0.714 0.530
142 257591_at AT3G24900 AtRLP39, receptor like protein 39, RLP39, receptor like protein 39 -0.706 0.097
143 246302_at AT3G51860 ATCAX3, ATHCX1, CAX1-LIKE, CAX3, cation exchanger 3 -0.698 0.236
144 262118_at AT1G02850 BGLU11, beta glucosidase 11 -0.692 0.573
145 252345_at AT3G48640 unknown -0.687 0.119
146 266017_at AT2G18690 unknown -0.677 0.381
147 266780_at AT2G29110 ATGLR2.8, glutamate receptor 2.8, GLR2.8, GLR2.8, glutamate receptor 2.8 -0.668 0.117
148 263852_at AT2G04450 ATNUDT6, nudix hydrolase homolog 6, ATNUDX6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, NUDT6, nudix hydrolase homolog 6, NUDX6, nucleoside diphosphates linked to some moiety X 6 -0.663 0.091
149 246842_at AT5G26731 unknown -0.653 -0.053
150 252681_at AT3G44350 anac061, NAC domain containing protein 61, NAC061, NAC domain containing protein 61 -0.646 -0.056
151 266821_at AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 -0.641 0.291
152 246108_at AT5G28630 [glycine-rich protein] -0.629 0.621
153 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 -0.628 -0.052
154 263800_at AT2G24600 [Ankyrin repeat family protein] -0.621 0.737
155 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.615 0.298
156 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 -0.608 0.989
157 250796_at AT5G05300 unknown -0.599 0.487
158 246144_at AT5G20110 [Dynein light chain type 1 family protein] -0.594 -0.032
159 245375_at AT4G17660 [Protein kinase superfamily protein] -0.587 0.163
160 247047_at AT5G66650 unknown -0.580 0.252
161 247266_at AT5G64570 ATBXL4, ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, XYL4, beta-D-xylosidase 4 -0.579 -0.092
162 246600_at AT5G14930 SAG101, senescence-associated gene 101 -0.577 0.425
163 255807_at AT4G10270 [Wound-responsive family protein] -0.577 -0.046
164 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 -0.574 0.798
165 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] -0.563 0.462
166 255596_at AT4G01720 AtWRKY47, WRKY47 -0.554 0.133
167 265327_at AT2G18210 unknown -0.552 0.463
168 248726_at AT5G47960 ATRABA4C, RAB GTPase homolog A4C, RABA4C, RAB GTPase homolog A4C, SMG1, SMALL MOLECULAR WEIGHT G-PROTEIN 1 -0.549 0.365
169 249622_at AT5G37550 unknown -0.549 -0.092
170 263379_at AT2G40140 ATSZF2, CZF1, SZF2, (SALT-INDUCIBLE ZINC FINGER 2, ZFAR1 -0.542 0.335
171 255753_at AT1G18570 AtMYB51, myb domain protein 51, BW51A, BW51B, HIG1, HIGH INDOLIC GLUCOSINOLATE 1, MYB51, myb domain protein 51 -0.527 0.792