4.0:Information of module
A. thaliana-A. halleri hybrid
In comparison with AgNO3 3 h  help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0033692 cellular polysaccharide biosynthetic pro... BP 3.966e-04
GO:0005976 polysaccharide metabolic process BP 4.491e-04
GO:0015979 photosynthesis BP 4.517e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006952 defense response BP 1.991e-04
GO:0006950 response to stress BP 2.380e-04
GO:0098542 defense response to other organism BP 7.257e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
A. thaliana-A. halleri hybrid		 Log2 signal ratio
AgNO3 3 h
1 255471_at AT4G03050 AOP3 1.521 0.031
2 256096_at AT1G13650 unknown 1.358 -0.298
3 256460_at AT1G36240 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 1.211 -0.162
4 253658_at AT4G30120 ATHMA3, A. THALIANA HEAVY METAL ATPASE 3, HMA3, heavy metal atpase 3 1.122 -0.018
5 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 1.116 0.591
6 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor 1.090 -0.265
7 250773_at AT5G05430 [RNA-binding protein] 1.046 0.015
8 266383_at AT2G14580 ATPRB1, basic pathogenesis-related protein 1, PRB1, basic pathogenesis-related protein 1 0.969 0.002
9 267569_at AT2G30790 PSBP-2, photosystem II subunit P-2 0.843 -0.038
10 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.818 0.432
11 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.811 0.384
12 251949_at AT3G53590 [Leucine-rich repeat protein kinase family protein] 0.781 0.019
13 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 0.772 -0.094
14 250891_at AT5G04530 KCS19, 3-ketoacyl-CoA synthase 19 0.756 -0.278
15 249461_at AT5G39640 [Putative endonuclease or glycosyl hydrolase] 0.742 0.044
16 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.704 -0.102
17 264940_at AT1G60470 AtGolS4, galactinol synthase 4, GolS4, galactinol synthase 4 0.703 0.107
18 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.699 0.585
19 251620_at AT3G58060 [Cation efflux family protein] 0.678 -0.092
20 262416_at AT1G49390 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.676 0.017
21 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.676 0.086
22 253754_at AT4G29020 [glycine-rich protein] 0.659 -0.112
23 264240_at AT1G54820 [Protein kinase superfamily protein] 0.622 -0.354
24 249004_at AT5G44570 unknown 0.621 0.158
25 267355_at AT2G39900 WLIM2a, WLIM2a 0.616 -0.189
26 250135_at AT5G15360 unknown 0.606 -0.050
27 260930_at AT1G02620 [Ras-related small GTP-binding family protein] 0.599 -0.027
28 262464_at AT1G50280 [Phototropic-responsive NPH3 family protein] 0.595 -0.124
29 249775_at AT5G24160 SQE6, squalene monoxygenase 6 0.590 0.443
30 247463_at AT5G62210 [Embryo-specific protein 3, (ATS3)] 0.590 -0.175
31 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 0.588 0.253
32 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 0.587 -0.139
33 253532_at AT4G31570 unknown 0.587 0.006
34 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.580 0.056
35 248734_at AT5G48090 ELP1, EDM2-like protein1 0.576 0.013
36 251919_at AT3G53800 Fes1B, Fes1B 0.574 -0.062
37 259522_at AT1G12490 [F-box associated ubiquitination effector family protein] 0.556 -0.021
38 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 0.529 -0.397
39 263979_at AT2G42840 PDF1, protodermal factor 1 0.511 -0.052
40 246011_at AT5G08330 AtTCP11, TCP11, TCP domain protein 11 0.504 -0.295
41 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 0.501 -0.198
42 253050_at AT4G37450 AGP18, arabinogalactan protein 18, ATAGP18 0.493 -0.165
43 257275_at AT3G14450 CID9, CTC-interacting domain 9 0.466 -0.260
44 246817_at AT5G27240 [DNAJ heat shock N-terminal domain-containing protein] 0.462 -0.007
45 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B 0.458 0.062
46 254566_at AT4G19240 unknown 0.453 0.040
47 262040_at AT1G80080 AtRLP17, Receptor Like Protein 17, TMM, TOO MANY MOUTHS 0.452 0.081
48 262354_at AT1G64200 VHA-E3, vacuolar H+-ATPase subunit E isoform 3 0.452 -0.125
49 252447_at AT3G47040 [Glycosyl hydrolase family protein] 0.448 -0.044
50 257417_at AT1G10110 [F-box family protein] 0.444 -0.042
51 252345_at AT3G48640 unknown 0.443 0.119
52 266718_at AT2G46800 ATCDF1, A. THALIANA CATION DIFFUSION FACILITATOR 1, ATMTP1, MTP1, metal tolerance protein 1, OZS1, OVERLY ZINC SENSITIVE 1, ZAT, zinc transporter of Arabidopsis thaliana, ZAT1, ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1 0.430 -0.042
53 255613_at AT4G01270 [RING/U-box superfamily protein] 0.429 -0.207
54 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 0.426 -0.249
55 263365_at AT2G20550 [HSP40/DnaJ peptide-binding protein] 0.423 0.025
56 260151_at AT1G52910 unknown 0.422 -0.115
57 258356_at AT3G14340 unknown 0.422 -0.117
58 265057_at AT1G52140 unknown 0.416 -0.039
59 259912_at AT1G72670 iqd8, IQ-domain 8 0.415 -0.039
60 267266_at AT2G23150 ATNRAMP3, NRAMP3, natural resistance-associated macrophage protein 3 0.413 0.138
61 255891_at AT1G17870 ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 0.412 -0.073
62 245454_at AT4G16920 [Disease resistance protein (TIR-NBS-LRR class) family] 0.407 -0.143
63 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 0.407 -0.146
64 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 0.395 -0.268
65 245929_at AT5G24760 [GroES-like zinc-binding dehydrogenase family protein] 0.394 0.037
66 252997_at AT4G38400 ATEXLA2, expansin-like A2, ATEXPL2, ATHEXP BETA 2.2, EXLA2, expansin-like A2, EXPL2, EXPANSIN L2 0.391 -0.246
67 267019_at AT2G39130 [Transmembrane amino acid transporter family protein] 0.385 -0.175
68 246000_at AT5G20820 SAUR76, SMALL AUXIN UPREGULATED RNA 76 0.384 -0.113
69 261068_at AT1G07450 [NAD(P)-binding Rossmann-fold superfamily protein] 0.383 -0.082
70 257772_at AT3G23080 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.379 -0.147
71 250437_at AT5G10430 AGP4, arabinogalactan protein 4, ATAGP4 0.377 -0.276
72 261984_at AT1G33760 [Integrase-type DNA-binding superfamily protein] 0.364 -0.042
73 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 0.357 -0.177
74 253729_at AT4G29360 [O-Glycosyl hydrolases family 17 protein] 0.349 -0.136
75 265587_at AT2G19980 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.343 0.016
76 264852_at AT2G17480 ATMLO8, MILDEW RESISTANCE LOCUS O 8, MLO8, MILDEW RESISTANCE LOCUS O 8 0.341 0.144
77 264235_at AT1G54560 ATXIE, MYOSIN XI E, XIE 0.335 -0.017
78 246002_at AT5G20740 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.332 -0.190
79 265425_at AT2G20770 GCL2, GCR2-like 2 0.330 0.017
80 261685_at AT1G47290 3BETAHSD/D1, 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1, AT3BETAHSD/D1, 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 0.328 -0.121
81 264104_at AT2G13750 [CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-17 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.326 0.035
82 265382_at AT2G16790 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.324 -0.009
83 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 0.324 -0.150
84 250133_at AT5G16400 ATF2, TRXF2, thioredoxin F2 0.320 -0.030
85 263688_at AT1G26920 unknown 0.319 -0.228
86 262920_at AT1G79500 AtkdsA1 0.317 -0.060
87 245574_at AT4G14750 IQD19, IQ-domain 19 0.314 -0.200
88 265611_at AT2G25510 unknown -1.480 0.002
89 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 -1.368 -0.031
90 247684_at AT5G59670 [Leucine-rich repeat protein kinase family protein] -1.242 -0.057
91 265615_at AT2G25450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.182 0.001
92 256940_at AT3G30720 QQS, QUA-QUINE STARCH -1.109 0.004
93 258027_at AT3G19515 unknown -1.027 -0.135
94 259559_at AT1G21240 WAK3, wall associated kinase 3 -0.980 0.052
95 245193_at AT1G67810 SUFE2, sulfur E2 -0.925 0.565
96 254894_at AT4G11840 PLDGAMMA3, phospholipase D gamma 3 -0.921 -0.087
97 249639_at AT5G36930 [Disease resistance protein (TIR-NBS-LRR class) family] -0.899 -0.012
98 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] -0.887 0.533
99 254481_at AT4G20480 [Putative endonuclease or glycosyl hydrolase] -0.868 0.045
100 250063_at AT5G17880 CSA1, constitutive shade-avoidance1 -0.822 0.046
101 245451_at AT4G16890 BAL, BALL, SNC1, SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 -0.816 0.102
102 252170_at AT3G50480 HR4, homolog of RPW8 4 -0.814 0.416
103 257625_at AT3G26230 CYP71B24, cytochrome P450, family 71, subfamily B, polypeptide 24 -0.812 0.285
104 256617_at AT3G22240 unknown -0.795 0.076
105 262615_at AT1G13950 ATELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A-1, EIF-5A, EIF5A, EUKARYOTIC ELONGATION FACTOR 5A, ELF5A-1, eukaryotic elongation factor 5A-1 -0.783 -0.125
106 264893_at AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.780 0.131
107 254585_at AT4G19500 [nucleoside-triphosphatases] -0.774 -0.024
108 264041_at AT2G03710 AGL3, AGAMOUS-like 3, SEP4, SEPALLATA 4 -0.766 -0.114
109 262010_at AT1G35612 [expressed protein] -0.744 -0.073
110 255627_at AT4G00955 unknown -0.720 0.076
111 248944_at AT5G45500 [RNI-like superfamily protein] -0.717 0.027
112 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 -0.696 1.000
113 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 -0.656 0.159
114 265917_at AT2G15080 AtRLP19, receptor like protein 19, RLP19, receptor like protein 19 -0.651 0.806
115 258113_at AT3G14650 CYP72A11, cytochrome P450, family 72, subfamily A, polypeptide 11 -0.646 -0.196
116 262669_at AT1G62850 [Class I peptide chain release factor] -0.631 0.108
117 257741_at AT3G27340 unknown -0.621 -0.050
118 252659_at AT3G44430 unknown -0.621 0.019
119 248092_at AT5G55170 ATSUMO3, SUM3, SMALL UBIQUITIN-LIKE MODIFIER 3, SUMO 3, SMALL UBIQUITIN-LIKE MODIFIER 3, SUMO3, small ubiquitin-like modifier 3 -0.620 -0.126
120 249124_at AT5G43740 [Disease resistance protein (CC-NBS-LRR class) family] -0.614 -0.043
121 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] -0.606 0.046
122 258228_at AT3G27610 [Nucleotidylyl transferase superfamily protein] -0.596 0.075
123 252165_at AT3G50550 unknown -0.568 0.077
124 260005_at AT1G67920 unknown -0.567 0.356
125 248079_at AT5G55790 unknown -0.565 -0.118
126 255319_at AT4G04220 AtRLP46, receptor like protein 46, RLP46, receptor like protein 46 -0.562 0.688
127 253422_at AT4G32240 unknown -0.559 -0.036
128 259529_at AT1G12400 [Nucleotide excision repair, TFIIH, subunit TTDA] -0.555 0.020
129 247988_at AT5G56910 [Proteinase inhibitor I25, cystatin, conserved region] -0.555 0.044
130 265245_at AT2G43060 AtIBH1, IBH1, ILI1 binding bHLH 1 -0.553 0.136
131 254586_at AT4G19510 [Disease resistance protein (TIR-NBS-LRR class)] -0.551 0.001
132 245384_at AT4G16790 [hydroxyproline-rich glycoprotein family protein] -0.551 0.040
133 250931_at AT5G03200 LUL1, LOG2-LIKE UBIQUITIN LIGASE1 -0.551 -0.018
134 252593_at AT3G45590 ATSEN1, splicing endonuclease 1, SEN1, splicing endonuclease 1 -0.544 0.103
135 251346_at AT3G60980 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.543 0.004
136 245055_at AT2G26470 unknown -0.543 -0.093
137 248060_at AT5G55560 [Protein kinase superfamily protein] -0.538 0.208
138 256568_at AT3G19520 unknown -0.533 0.055
139 256303_at AT1G69550 [disease resistance protein (TIR-NBS-LRR class)] -0.533 -0.050
140 255257_at AT4G05050 UBQ11, ubiquitin 11 -0.506 0.043
141 257824_at AT3G25290 [Auxin-responsive family protein] -0.485 -0.150
142 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -0.482 0.277
143 252282_at AT3G49360 PGL2, 6-phosphogluconolactonase 2 -0.481 -0.115
144 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] -0.481 0.115
145 251037_at AT5G02100 ORP3A, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3A, UNE18, UNFERTILIZED EMBRYO SAC 18 -0.470 0.068
146 260966_at AT1G12220 RPS5, RESISTANT TO P. SYRINGAE 5 -0.466 0.157
147 247105_at AT5G66630 DAR5, DA1-related protein 5 -0.464 0.045
148 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 -0.463 0.161
149 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.463 -0.231
150 255260_at AT4G05040 [ankyrin repeat family protein] -0.460 -0.127
151 248726_at AT5G47960 ATRABA4C, RAB GTPase homolog A4C, RABA4C, RAB GTPase homolog A4C, SMG1, SMALL MOLECULAR WEIGHT G-PROTEIN 1 -0.455 0.365
152 249822_at AT5G23710 [DNA binding] -0.453 0.053
153 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 -0.446 0.798
154 254797_at AT4G13030 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.444 -0.187
155 260110_at AT1G63350 [Disease resistance protein (CC-NBS-LRR class) family] -0.438 0.143
156 264232_at AT1G67470 [Protein kinase superfamily protein] -0.438 0.114
157 261317_at AT1G53030 [Cytochrome C oxidase copper chaperone (COX17)] -0.428 0.233
158 266659_at AT2G25850 PAPS2, poly(A) polymerase 2 -0.415 0.271
159 248315_at AT5G52630 MEF1, mitochondrial RNA editing factor 1 -0.411 -0.113
160 245807_at AT1G46768 RAP2.1, related to AP2 1 -0.408 0.036
161 259934_at AT1G71340 AtGDPD4, GDPD4, glycerophosphodiester phosphodiesterase 4 -0.408 0.001
162 266480_at AT2G31130 unknown -0.407 0.131
163 264658_at AT1G09910 [Rhamnogalacturonate lyase family protein] -0.404 0.100
164 249838_at AT5G23460 unknown -0.400 0.098
165 259479_at AT1G19020 unknown -0.394 0.549
166 261561_at AT1G01730 unknown -0.373 0.074
167 248694_at AT5G48340 unknown -0.360 -0.067
168 247934_at AT5G57000 unknown -0.359 0.026
169 266782_at AT2G29120 ATGLR2.7, glutamate receptor 2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, GLR2.7, glutamate receptor 2.7 -0.355 0.481
170 260189_at AT1G67550 URE, urease -0.347 0.016
171 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] -0.346 0.209
172 247167_at AT5G65850 [F-box and associated interaction domains-containing protein] -0.346 -0.035
173 262668_at AT1G62830 ATLSD1, ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATSWP1, LDL1, LSD1-like 1, LSD1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1 -0.340 -0.140