4.0:Information of module
A. thaliana-A. halleri hybrid
In comparison with long 12-degree- help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0033692 cellular polysaccharide biosynthetic pro... BP 3.966e-04
GO:0005976 polysaccharide metabolic process BP 4.491e-04
GO:0015979 photosynthesis BP 4.517e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006952 defense response BP 1.991e-04
GO:0006950 response to stress BP 2.380e-04
GO:0098542 defense response to other organism BP 7.257e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
A. thaliana-A. halleri hybrid		 Log2 signal ratio
long 12-degree-
1 255471_at AT4G03050 AOP3 1.521 -0.020
2 256096_at AT1G13650 unknown 1.358 -0.212
3 256460_at AT1G36240 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 1.211 0.034
4 253658_at AT4G30120 ATHMA3, A. THALIANA HEAVY METAL ATPASE 3, HMA3, heavy metal atpase 3 1.122 0.029
5 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 1.116 0.056
6 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor 1.090 -0.006
7 250773_at AT5G05430 [RNA-binding protein] 1.046 -0.053
8 266383_at AT2G14580 ATPRB1, basic pathogenesis-related protein 1, PRB1, basic pathogenesis-related protein 1 0.969 0.105
9 267569_at AT2G30790 PSBP-2, photosystem II subunit P-2 0.843 -0.012
10 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.818 0.078
11 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.811 0.089
12 251949_at AT3G53590 [Leucine-rich repeat protein kinase family protein] 0.781 -0.019
13 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 0.772 -0.023
14 250891_at AT5G04530 KCS19, 3-ketoacyl-CoA synthase 19 0.756 -0.129
15 249461_at AT5G39640 [Putative endonuclease or glycosyl hydrolase] 0.742 0.022
16 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.704 0.018
17 264940_at AT1G60470 AtGolS4, galactinol synthase 4, GolS4, galactinol synthase 4 0.703 0.030
18 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.699 0.026
19 251620_at AT3G58060 [Cation efflux family protein] 0.678 0.020
20 262416_at AT1G49390 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.676 0.010
21 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.676 0.035
22 253754_at AT4G29020 [glycine-rich protein] 0.659 -0.009
23 264240_at AT1G54820 [Protein kinase superfamily protein] 0.622 0.018
24 249004_at AT5G44570 unknown 0.621 0.034
25 267355_at AT2G39900 WLIM2a, WLIM2a 0.616 -0.029
26 250135_at AT5G15360 unknown 0.606 0.014
27 260930_at AT1G02620 [Ras-related small GTP-binding family protein] 0.599 -0.008
28 262464_at AT1G50280 [Phototropic-responsive NPH3 family protein] 0.595 -0.037
29 249775_at AT5G24160 SQE6, squalene monoxygenase 6 0.590 -0.437
30 247463_at AT5G62210 [Embryo-specific protein 3, (ATS3)] 0.590 0.372
31 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 0.588 0.179
32 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 0.587 0.079
33 253532_at AT4G31570 unknown 0.587 0.033
34 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.580 0.006
35 248734_at AT5G48090 ELP1, EDM2-like protein1 0.576 -0.001
36 251919_at AT3G53800 Fes1B, Fes1B 0.574 -0.058
37 259522_at AT1G12490 [F-box associated ubiquitination effector family protein] 0.556 0.023
38 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 0.529 -0.052
39 263979_at AT2G42840 PDF1, protodermal factor 1 0.511 0.016
40 246011_at AT5G08330 AtTCP11, TCP11, TCP domain protein 11 0.504 -0.116
41 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 0.501 -0.151
42 253050_at AT4G37450 AGP18, arabinogalactan protein 18, ATAGP18 0.493 -0.029
43 257275_at AT3G14450 CID9, CTC-interacting domain 9 0.466 -0.003
44 246817_at AT5G27240 [DNAJ heat shock N-terminal domain-containing protein] 0.462 -0.064
45 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B 0.458 0.066
46 254566_at AT4G19240 unknown 0.453 -0.092
47 262040_at AT1G80080 AtRLP17, Receptor Like Protein 17, TMM, TOO MANY MOUTHS 0.452 -0.016
48 262354_at AT1G64200 VHA-E3, vacuolar H+-ATPase subunit E isoform 3 0.452 -0.131
49 252447_at AT3G47040 [Glycosyl hydrolase family protein] 0.448 0.007
50 257417_at AT1G10110 [F-box family protein] 0.444 0.005
51 252345_at AT3G48640 unknown 0.443 0.072
52 266718_at AT2G46800 ATCDF1, A. THALIANA CATION DIFFUSION FACILITATOR 1, ATMTP1, MTP1, metal tolerance protein 1, OZS1, OVERLY ZINC SENSITIVE 1, ZAT, zinc transporter of Arabidopsis thaliana, ZAT1, ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1 0.430 -0.008
53 255613_at AT4G01270 [RING/U-box superfamily protein] 0.429 0.033
54 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 0.426 -0.072
55 263365_at AT2G20550 [HSP40/DnaJ peptide-binding protein] 0.423 -0.044
56 260151_at AT1G52910 unknown 0.422 0.051
57 258356_at AT3G14340 unknown 0.422 0.037
58 265057_at AT1G52140 unknown 0.416 -0.033
59 259912_at AT1G72670 iqd8, IQ-domain 8 0.415 0.051
60 267266_at AT2G23150 ATNRAMP3, NRAMP3, natural resistance-associated macrophage protein 3 0.413 0.059
61 255891_at AT1G17870 ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 0.412 0.044
62 245454_at AT4G16920 [Disease resistance protein (TIR-NBS-LRR class) family] 0.407 0.046
63 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 0.407 -0.056
64 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 0.395 -0.094
65 245929_at AT5G24760 [GroES-like zinc-binding dehydrogenase family protein] 0.394 0.027
66 252997_at AT4G38400 ATEXLA2, expansin-like A2, ATEXPL2, ATHEXP BETA 2.2, EXLA2, expansin-like A2, EXPL2, EXPANSIN L2 0.391 0.047
67 267019_at AT2G39130 [Transmembrane amino acid transporter family protein] 0.385 -0.033
68 246000_at AT5G20820 SAUR76, SMALL AUXIN UPREGULATED RNA 76 0.384 0.030
69 261068_at AT1G07450 [NAD(P)-binding Rossmann-fold superfamily protein] 0.383 0.097
70 257772_at AT3G23080 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.379 0.003
71 250437_at AT5G10430 AGP4, arabinogalactan protein 4, ATAGP4 0.377 0.020
72 261984_at AT1G33760 [Integrase-type DNA-binding superfamily protein] 0.364 0.036
73 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 0.357 -0.047
74 253729_at AT4G29360 [O-Glycosyl hydrolases family 17 protein] 0.349 0.025
75 265587_at AT2G19980 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.343 0.053
76 264852_at AT2G17480 ATMLO8, MILDEW RESISTANCE LOCUS O 8, MLO8, MILDEW RESISTANCE LOCUS O 8 0.341 -0.047
77 264235_at AT1G54560 ATXIE, MYOSIN XI E, XIE 0.335 0.041
78 246002_at AT5G20740 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.332 -0.026
79 265425_at AT2G20770 GCL2, GCR2-like 2 0.330 0.019
80 261685_at AT1G47290 3BETAHSD/D1, 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1, AT3BETAHSD/D1, 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 0.328 0.038
81 264104_at AT2G13750 [CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-17 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.326 0.030
82 265382_at AT2G16790 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.324 -0.020
83 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 0.324 -0.073
84 250133_at AT5G16400 ATF2, TRXF2, thioredoxin F2 0.320 -0.038
85 263688_at AT1G26920 unknown 0.319 -0.089
86 262920_at AT1G79500 AtkdsA1 0.317 0.027
87 245574_at AT4G14750 IQD19, IQ-domain 19 0.314 -0.104
88 265611_at AT2G25510 unknown -1.480 0.007
89 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 -1.368 -0.028
90 247684_at AT5G59670 [Leucine-rich repeat protein kinase family protein] -1.242 -0.091
91 265615_at AT2G25450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.182 0.011
92 256940_at AT3G30720 QQS, QUA-QUINE STARCH -1.109 0.019
93 258027_at AT3G19515 unknown -1.027 0.056
94 259559_at AT1G21240 WAK3, wall associated kinase 3 -0.980 0.046
95 245193_at AT1G67810 SUFE2, sulfur E2 -0.925 0.001
96 254894_at AT4G11840 PLDGAMMA3, phospholipase D gamma 3 -0.921 0.057
97 249639_at AT5G36930 [Disease resistance protein (TIR-NBS-LRR class) family] -0.899 -0.156
98 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] -0.887 -0.002
99 254481_at AT4G20480 [Putative endonuclease or glycosyl hydrolase] -0.868 0.016
100 250063_at AT5G17880 CSA1, constitutive shade-avoidance1 -0.822 -0.061
101 245451_at AT4G16890 BAL, BALL, SNC1, SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 -0.816 -0.037
102 252170_at AT3G50480 HR4, homolog of RPW8 4 -0.814 -0.033
103 257625_at AT3G26230 CYP71B24, cytochrome P450, family 71, subfamily B, polypeptide 24 -0.812 -0.065
104 256617_at AT3G22240 unknown -0.795 -0.005
105 262615_at AT1G13950 ATELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A-1, EIF-5A, EIF5A, EUKARYOTIC ELONGATION FACTOR 5A, ELF5A-1, eukaryotic elongation factor 5A-1 -0.783 -0.107
106 264893_at AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.780 0.289
107 254585_at AT4G19500 [nucleoside-triphosphatases] -0.774 -0.035
108 264041_at AT2G03710 AGL3, AGAMOUS-like 3, SEP4, SEPALLATA 4 -0.766 0.001
109 262010_at AT1G35612 [expressed protein] -0.744 -0.106
110 255627_at AT4G00955 unknown -0.720 -0.071
111 248944_at AT5G45500 [RNI-like superfamily protein] -0.717 -0.004
112 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 -0.696 -0.080
113 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 -0.656 0.094
114 265917_at AT2G15080 AtRLP19, receptor like protein 19, RLP19, receptor like protein 19 -0.651 -0.064
115 258113_at AT3G14650 CYP72A11, cytochrome P450, family 72, subfamily A, polypeptide 11 -0.646 0.023
116 262669_at AT1G62850 [Class I peptide chain release factor] -0.631 -0.015
117 257741_at AT3G27340 unknown -0.621 -0.010
118 252659_at AT3G44430 unknown -0.621 0.107
119 248092_at AT5G55170 ATSUMO3, SUM3, SMALL UBIQUITIN-LIKE MODIFIER 3, SUMO 3, SMALL UBIQUITIN-LIKE MODIFIER 3, SUMO3, small ubiquitin-like modifier 3 -0.620 -0.116
120 249124_at AT5G43740 [Disease resistance protein (CC-NBS-LRR class) family] -0.614 0.031
121 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] -0.606 -0.015
122 258228_at AT3G27610 [Nucleotidylyl transferase superfamily protein] -0.596 -0.090
123 252165_at AT3G50550 unknown -0.568 0.168
124 260005_at AT1G67920 unknown -0.567 0.102
125 248079_at AT5G55790 unknown -0.565 -0.047
126 255319_at AT4G04220 AtRLP46, receptor like protein 46, RLP46, receptor like protein 46 -0.562 -0.027
127 253422_at AT4G32240 unknown -0.559 -0.068
128 259529_at AT1G12400 [Nucleotide excision repair, TFIIH, subunit TTDA] -0.555 0.027
129 247988_at AT5G56910 [Proteinase inhibitor I25, cystatin, conserved region] -0.555 -0.060
130 265245_at AT2G43060 AtIBH1, IBH1, ILI1 binding bHLH 1 -0.553 -0.037
131 254586_at AT4G19510 [Disease resistance protein (TIR-NBS-LRR class)] -0.551 -0.037
132 245384_at AT4G16790 [hydroxyproline-rich glycoprotein family protein] -0.551 0.030
133 250931_at AT5G03200 LUL1, LOG2-LIKE UBIQUITIN LIGASE1 -0.551 -0.016
134 252593_at AT3G45590 ATSEN1, splicing endonuclease 1, SEN1, splicing endonuclease 1 -0.544 0.024
135 251346_at AT3G60980 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.543 0.028
136 245055_at AT2G26470 unknown -0.543 0.050
137 248060_at AT5G55560 [Protein kinase superfamily protein] -0.538 0.021
138 256568_at AT3G19520 unknown -0.533 -0.051
139 256303_at AT1G69550 [disease resistance protein (TIR-NBS-LRR class)] -0.533 0.039
140 255257_at AT4G05050 UBQ11, ubiquitin 11 -0.506 -0.003
141 257824_at AT3G25290 [Auxin-responsive family protein] -0.485 -0.065
142 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -0.482 -0.048
143 252282_at AT3G49360 PGL2, 6-phosphogluconolactonase 2 -0.481 -0.024
144 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] -0.481 0.092
145 251037_at AT5G02100 ORP3A, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3A, UNE18, UNFERTILIZED EMBRYO SAC 18 -0.470 -0.025
146 260966_at AT1G12220 RPS5, RESISTANT TO P. SYRINGAE 5 -0.466 -0.086
147 247105_at AT5G66630 DAR5, DA1-related protein 5 -0.464 -0.033
148 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 -0.463 0.155
149 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.463 -0.011
150 255260_at AT4G05040 [ankyrin repeat family protein] -0.460 0.046
151 248726_at AT5G47960 ATRABA4C, RAB GTPase homolog A4C, RABA4C, RAB GTPase homolog A4C, SMG1, SMALL MOLECULAR WEIGHT G-PROTEIN 1 -0.455 0.073
152 249822_at AT5G23710 [DNA binding] -0.453 0.047
153 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 -0.446 -0.005
154 254797_at AT4G13030 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.444 -0.048
155 260110_at AT1G63350 [Disease resistance protein (CC-NBS-LRR class) family] -0.438 -0.065
156 264232_at AT1G67470 [Protein kinase superfamily protein] -0.438 0.027
157 261317_at AT1G53030 [Cytochrome C oxidase copper chaperone (COX17)] -0.428 0.089
158 266659_at AT2G25850 PAPS2, poly(A) polymerase 2 -0.415 -0.099
159 248315_at AT5G52630 MEF1, mitochondrial RNA editing factor 1 -0.411 -0.013
160 245807_at AT1G46768 RAP2.1, related to AP2 1 -0.408 0.126
161 259934_at AT1G71340 AtGDPD4, GDPD4, glycerophosphodiester phosphodiesterase 4 -0.408 -0.028
162 266480_at AT2G31130 unknown -0.407 -0.022
163 264658_at AT1G09910 [Rhamnogalacturonate lyase family protein] -0.404 -0.033
164 249838_at AT5G23460 unknown -0.400 0.013
165 259479_at AT1G19020 unknown -0.394 0.168
166 261561_at AT1G01730 unknown -0.373 -0.011
167 248694_at AT5G48340 unknown -0.360 0.026
168 247934_at AT5G57000 unknown -0.359 -0.039
169 266782_at AT2G29120 ATGLR2.7, glutamate receptor 2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, GLR2.7, glutamate receptor 2.7 -0.355 0.004
170 260189_at AT1G67550 URE, urease -0.347 0.097
171 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] -0.346 0.016
172 247167_at AT5G65850 [F-box and associated interaction domains-containing protein] -0.346 -0.035
173 262668_at AT1G62830 ATLSD1, ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATSWP1, LDL1, LSD1-like 1, LSD1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1 -0.340 0.005