4.0:Information of module
A. thaliana-A. halleri hybrid
In comparison with rli help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0033692 cellular polysaccharide biosynthetic pro... BP 3.966e-04
GO:0005976 polysaccharide metabolic process BP 4.491e-04
GO:0015979 photosynthesis BP 4.517e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006952 defense response BP 1.991e-04
GO:0006950 response to stress BP 2.380e-04
GO:0098542 defense response to other organism BP 7.257e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
A. thaliana-A. halleri hybrid		 Log2 signal ratio
rli
1 255471_at AT4G03050 AOP3 1.521 0.043
2 256096_at AT1G13650 unknown 1.358 -0.470
3 256460_at AT1G36240 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 1.211 0.074
4 253658_at AT4G30120 ATHMA3, A. THALIANA HEAVY METAL ATPASE 3, HMA3, heavy metal atpase 3 1.122 -0.036
5 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 1.116 0.840
6 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor 1.090 -0.043
7 250773_at AT5G05430 [RNA-binding protein] 1.046 -0.060
8 266383_at AT2G14580 ATPRB1, basic pathogenesis-related protein 1, PRB1, basic pathogenesis-related protein 1 0.969 -0.023
9 267569_at AT2G30790 PSBP-2, photosystem II subunit P-2 0.843 0.175
10 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.818 -0.554
11 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.811 -0.111
12 251949_at AT3G53590 [Leucine-rich repeat protein kinase family protein] 0.781 -0.032
13 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 0.772 -0.107
14 250891_at AT5G04530 KCS19, 3-ketoacyl-CoA synthase 19 0.756 0.083
15 249461_at AT5G39640 [Putative endonuclease or glycosyl hydrolase] 0.742 -0.037
16 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.704 0.389
17 264940_at AT1G60470 AtGolS4, galactinol synthase 4, GolS4, galactinol synthase 4 0.703 0.009
18 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.699 0.156
19 251620_at AT3G58060 [Cation efflux family protein] 0.678 -0.036
20 262416_at AT1G49390 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.676 -0.065
21 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.676 -0.457
22 253754_at AT4G29020 [glycine-rich protein] 0.659 0.010
23 264240_at AT1G54820 [Protein kinase superfamily protein] 0.622 -0.041
24 249004_at AT5G44570 unknown 0.621 -0.525
25 267355_at AT2G39900 WLIM2a, WLIM2a 0.616 -0.052
26 250135_at AT5G15360 unknown 0.606 -0.598
27 260930_at AT1G02620 [Ras-related small GTP-binding family protein] 0.599 -0.169
28 262464_at AT1G50280 [Phototropic-responsive NPH3 family protein] 0.595 -0.071
29 249775_at AT5G24160 SQE6, squalene monoxygenase 6 0.590 -0.092
30 247463_at AT5G62210 [Embryo-specific protein 3, (ATS3)] 0.590 -0.003
31 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 0.588 -0.088
32 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 0.587 -0.112
33 253532_at AT4G31570 unknown 0.587 -0.493
34 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.580 -0.156
35 248734_at AT5G48090 ELP1, EDM2-like protein1 0.576 -0.283
36 251919_at AT3G53800 Fes1B, Fes1B 0.574 -0.145
37 259522_at AT1G12490 [F-box associated ubiquitination effector family protein] 0.556 0.059
38 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 0.529 -0.202
39 263979_at AT2G42840 PDF1, protodermal factor 1 0.511 0.035
40 246011_at AT5G08330 AtTCP11, TCP11, TCP domain protein 11 0.504 -0.071
41 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 0.501 -0.229
42 253050_at AT4G37450 AGP18, arabinogalactan protein 18, ATAGP18 0.493 0.029
43 257275_at AT3G14450 CID9, CTC-interacting domain 9 0.466 -0.033
44 246817_at AT5G27240 [DNAJ heat shock N-terminal domain-containing protein] 0.462 -0.138
45 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B 0.458 0.395
46 254566_at AT4G19240 unknown 0.453 -0.526
47 262040_at AT1G80080 AtRLP17, Receptor Like Protein 17, TMM, TOO MANY MOUTHS 0.452 0.004
48 262354_at AT1G64200 VHA-E3, vacuolar H+-ATPase subunit E isoform 3 0.452 -0.071
49 252447_at AT3G47040 [Glycosyl hydrolase family protein] 0.448 -0.053
50 257417_at AT1G10110 [F-box family protein] 0.444 -0.376
51 252345_at AT3G48640 unknown 0.443 0.032
52 266718_at AT2G46800 ATCDF1, A. THALIANA CATION DIFFUSION FACILITATOR 1, ATMTP1, MTP1, metal tolerance protein 1, OZS1, OVERLY ZINC SENSITIVE 1, ZAT, zinc transporter of Arabidopsis thaliana, ZAT1, ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1 0.430 0.038
53 255613_at AT4G01270 [RING/U-box superfamily protein] 0.429 -0.067
54 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 0.426 0.069
55 263365_at AT2G20550 [HSP40/DnaJ peptide-binding protein] 0.423 0.223
56 260151_at AT1G52910 unknown 0.422 -0.103
57 258356_at AT3G14340 unknown 0.422 0.112
58 265057_at AT1G52140 unknown 0.416 -0.073
59 259912_at AT1G72670 iqd8, IQ-domain 8 0.415 -0.102
60 267266_at AT2G23150 ATNRAMP3, NRAMP3, natural resistance-associated macrophage protein 3 0.413 0.039
61 255891_at AT1G17870 ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 0.412 0.156
62 245454_at AT4G16920 [Disease resistance protein (TIR-NBS-LRR class) family] 0.407 0.025
63 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 0.407 -0.081
64 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 0.395 -0.113
65 245929_at AT5G24760 [GroES-like zinc-binding dehydrogenase family protein] 0.394 -0.040
66 252997_at AT4G38400 ATEXLA2, expansin-like A2, ATEXPL2, ATHEXP BETA 2.2, EXLA2, expansin-like A2, EXPL2, EXPANSIN L2 0.391 0.116
67 267019_at AT2G39130 [Transmembrane amino acid transporter family protein] 0.385 -0.149
68 246000_at AT5G20820 SAUR76, SMALL AUXIN UPREGULATED RNA 76 0.384 -0.113
69 261068_at AT1G07450 [NAD(P)-binding Rossmann-fold superfamily protein] 0.383 -0.053
70 257772_at AT3G23080 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.379 0.046
71 250437_at AT5G10430 AGP4, arabinogalactan protein 4, ATAGP4 0.377 -0.117
72 261984_at AT1G33760 [Integrase-type DNA-binding superfamily protein] 0.364 0.552
73 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 0.357 -0.187
74 253729_at AT4G29360 [O-Glycosyl hydrolases family 17 protein] 0.349 -0.052
75 265587_at AT2G19980 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.343 -0.147
76 264852_at AT2G17480 ATMLO8, MILDEW RESISTANCE LOCUS O 8, MLO8, MILDEW RESISTANCE LOCUS O 8 0.341 -0.066
77 264235_at AT1G54560 ATXIE, MYOSIN XI E, XIE 0.335 -0.271
78 246002_at AT5G20740 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.332 0.055
79 265425_at AT2G20770 GCL2, GCR2-like 2 0.330 -0.017
80 261685_at AT1G47290 3BETAHSD/D1, 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1, AT3BETAHSD/D1, 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 0.328 -0.129
81 264104_at AT2G13750 [CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-17 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.326 0.007
82 265382_at AT2G16790 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.324 -0.195
83 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 0.324 -0.284
84 250133_at AT5G16400 ATF2, TRXF2, thioredoxin F2 0.320 -0.042
85 263688_at AT1G26920 unknown 0.319 -0.064
86 262920_at AT1G79500 AtkdsA1 0.317 -0.105
87 245574_at AT4G14750 IQD19, IQ-domain 19 0.314 -0.075
88 265611_at AT2G25510 unknown -1.480 -0.008
89 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 -1.368 1.207
90 247684_at AT5G59670 [Leucine-rich repeat protein kinase family protein] -1.242 0.092
91 265615_at AT2G25450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.182 0.011
92 256940_at AT3G30720 QQS, QUA-QUINE STARCH -1.109 0.590
93 258027_at AT3G19515 unknown -1.027 -0.053
94 259559_at AT1G21240 WAK3, wall associated kinase 3 -0.980 0.221
95 245193_at AT1G67810 SUFE2, sulfur E2 -0.925 0.261
96 254894_at AT4G11840 PLDGAMMA3, phospholipase D gamma 3 -0.921 -0.033
97 249639_at AT5G36930 [Disease resistance protein (TIR-NBS-LRR class) family] -0.899 0.239
98 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] -0.887 0.688
99 254481_at AT4G20480 [Putative endonuclease or glycosyl hydrolase] -0.868 0.487
100 250063_at AT5G17880 CSA1, constitutive shade-avoidance1 -0.822 0.437
101 245451_at AT4G16890 BAL, BALL, SNC1, SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 -0.816 0.770
102 252170_at AT3G50480 HR4, homolog of RPW8 4 -0.814 0.815
103 257625_at AT3G26230 CYP71B24, cytochrome P450, family 71, subfamily B, polypeptide 24 -0.812 0.504
104 256617_at AT3G22240 unknown -0.795 0.789
105 262615_at AT1G13950 ATELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A-1, EIF-5A, EIF5A, EUKARYOTIC ELONGATION FACTOR 5A, ELF5A-1, eukaryotic elongation factor 5A-1 -0.783 0.047
106 264893_at AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.780 0.055
107 254585_at AT4G19500 [nucleoside-triphosphatases] -0.774 0.820
108 264041_at AT2G03710 AGL3, AGAMOUS-like 3, SEP4, SEPALLATA 4 -0.766 0.220
109 262010_at AT1G35612 [expressed protein] -0.744 0.157
110 255627_at AT4G00955 unknown -0.720 -0.178
111 248944_at AT5G45500 [RNI-like superfamily protein] -0.717 0.172
112 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 -0.696 -0.030
113 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 -0.656 0.196
114 265917_at AT2G15080 AtRLP19, receptor like protein 19, RLP19, receptor like protein 19 -0.651 0.438
115 258113_at AT3G14650 CYP72A11, cytochrome P450, family 72, subfamily A, polypeptide 11 -0.646 0.110
116 262669_at AT1G62850 [Class I peptide chain release factor] -0.631 0.213
117 257741_at AT3G27340 unknown -0.621 0.339
118 252659_at AT3G44430 unknown -0.621 -0.131
119 248092_at AT5G55170 ATSUMO3, SUM3, SMALL UBIQUITIN-LIKE MODIFIER 3, SUMO 3, SMALL UBIQUITIN-LIKE MODIFIER 3, SUMO3, small ubiquitin-like modifier 3 -0.620 -0.089
120 249124_at AT5G43740 [Disease resistance protein (CC-NBS-LRR class) family] -0.614 -0.125
121 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] -0.606 0.065
122 258228_at AT3G27610 [Nucleotidylyl transferase superfamily protein] -0.596 0.306
123 252165_at AT3G50550 unknown -0.568 0.041
124 260005_at AT1G67920 unknown -0.567 0.152
125 248079_at AT5G55790 unknown -0.565 0.285
126 255319_at AT4G04220 AtRLP46, receptor like protein 46, RLP46, receptor like protein 46 -0.562 -0.101
127 253422_at AT4G32240 unknown -0.559 0.024
128 259529_at AT1G12400 [Nucleotide excision repair, TFIIH, subunit TTDA] -0.555 0.719
129 247988_at AT5G56910 [Proteinase inhibitor I25, cystatin, conserved region] -0.555 0.431
130 265245_at AT2G43060 AtIBH1, IBH1, ILI1 binding bHLH 1 -0.553 0.021
131 254586_at AT4G19510 [Disease resistance protein (TIR-NBS-LRR class)] -0.551 0.376
132 245384_at AT4G16790 [hydroxyproline-rich glycoprotein family protein] -0.551 0.103
133 250931_at AT5G03200 LUL1, LOG2-LIKE UBIQUITIN LIGASE1 -0.551 0.306
134 252593_at AT3G45590 ATSEN1, splicing endonuclease 1, SEN1, splicing endonuclease 1 -0.544 -0.159
135 251346_at AT3G60980 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.543 -0.220
136 245055_at AT2G26470 unknown -0.543 0.363
137 248060_at AT5G55560 [Protein kinase superfamily protein] -0.538 0.142
138 256568_at AT3G19520 unknown -0.533 -0.033
139 256303_at AT1G69550 [disease resistance protein (TIR-NBS-LRR class)] -0.533 0.128
140 255257_at AT4G05050 UBQ11, ubiquitin 11 -0.506 0.015
141 257824_at AT3G25290 [Auxin-responsive family protein] -0.485 0.250
142 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -0.482 0.081
143 252282_at AT3G49360 PGL2, 6-phosphogluconolactonase 2 -0.481 0.276
144 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] -0.481 0.041
145 251037_at AT5G02100 ORP3A, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3A, UNE18, UNFERTILIZED EMBRYO SAC 18 -0.470 0.153
146 260966_at AT1G12220 RPS5, RESISTANT TO P. SYRINGAE 5 -0.466 0.264
147 247105_at AT5G66630 DAR5, DA1-related protein 5 -0.464 -0.010
148 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 -0.463 0.130
149 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.463 -0.120
150 255260_at AT4G05040 [ankyrin repeat family protein] -0.460 -0.143
151 248726_at AT5G47960 ATRABA4C, RAB GTPase homolog A4C, RABA4C, RAB GTPase homolog A4C, SMG1, SMALL MOLECULAR WEIGHT G-PROTEIN 1 -0.455 0.283
152 249822_at AT5G23710 [DNA binding] -0.453 -0.023
153 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 -0.446 0.055
154 254797_at AT4G13030 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.444 0.345
155 260110_at AT1G63350 [Disease resistance protein (CC-NBS-LRR class) family] -0.438 0.252
156 264232_at AT1G67470 [Protein kinase superfamily protein] -0.438 0.192
157 261317_at AT1G53030 [Cytochrome C oxidase copper chaperone (COX17)] -0.428 -0.071
158 266659_at AT2G25850 PAPS2, poly(A) polymerase 2 -0.415 0.123
159 248315_at AT5G52630 MEF1, mitochondrial RNA editing factor 1 -0.411 -0.017
160 245807_at AT1G46768 RAP2.1, related to AP2 1 -0.408 0.058
161 259934_at AT1G71340 AtGDPD4, GDPD4, glycerophosphodiester phosphodiesterase 4 -0.408 0.110
162 266480_at AT2G31130 unknown -0.407 0.015
163 264658_at AT1G09910 [Rhamnogalacturonate lyase family protein] -0.404 0.375
164 249838_at AT5G23460 unknown -0.400 0.124
165 259479_at AT1G19020 unknown -0.394 0.044
166 261561_at AT1G01730 unknown -0.373 0.138
167 248694_at AT5G48340 unknown -0.360 0.118
168 247934_at AT5G57000 unknown -0.359 0.032
169 266782_at AT2G29120 ATGLR2.7, glutamate receptor 2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, GLR2.7, glutamate receptor 2.7 -0.355 -0.050
170 260189_at AT1G67550 URE, urease -0.347 -0.078
171 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] -0.346 0.203
172 247167_at AT5G65850 [F-box and associated interaction domains-containing protein] -0.346 0.324
173 262668_at AT1G62830 ATLSD1, ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATSWP1, LDL1, LSD1-like 1, LSD1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1 -0.340 0.040