4.0:Information of module
A. thaliana-A. halleri hybrid
In comparison with vtc1 (II) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0033692 cellular polysaccharide biosynthetic pro... BP 3.966e-04
GO:0005976 polysaccharide metabolic process BP 4.491e-04
GO:0015979 photosynthesis BP 4.517e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006952 defense response BP 1.991e-04
GO:0006950 response to stress BP 2.380e-04
GO:0098542 defense response to other organism BP 7.257e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
A. thaliana-A. halleri hybrid		 Log2 signal ratio
vtc1 (II)
1 255471_at AT4G03050 AOP3 1.521 0.010
2 256096_at AT1G13650 unknown 1.358 -0.056
3 256460_at AT1G36240 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 1.211 0.004
4 253658_at AT4G30120 ATHMA3, A. THALIANA HEAVY METAL ATPASE 3, HMA3, heavy metal atpase 3 1.122 -0.006
5 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 1.116 0.135
6 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor 1.090 -0.029
7 250773_at AT5G05430 [RNA-binding protein] 1.046 -0.070
8 266383_at AT2G14580 ATPRB1, basic pathogenesis-related protein 1, PRB1, basic pathogenesis-related protein 1 0.969 0.033
9 267569_at AT2G30790 PSBP-2, photosystem II subunit P-2 0.843 0.083
10 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.818 -0.524
11 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.811 -0.001
12 251949_at AT3G53590 [Leucine-rich repeat protein kinase family protein] 0.781 -0.031
13 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 0.772 -0.015
14 250891_at AT5G04530 KCS19, 3-ketoacyl-CoA synthase 19 0.756 -0.180
15 249461_at AT5G39640 [Putative endonuclease or glycosyl hydrolase] 0.742 -0.023
16 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.704 0.003
17 264940_at AT1G60470 AtGolS4, galactinol synthase 4, GolS4, galactinol synthase 4 0.703 0.062
18 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.699 -0.076
19 251620_at AT3G58060 [Cation efflux family protein] 0.678 -0.063
20 262416_at AT1G49390 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.676 -0.103
21 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.676 -0.641
22 253754_at AT4G29020 [glycine-rich protein] 0.659 -0.098
23 264240_at AT1G54820 [Protein kinase superfamily protein] 0.622 -0.013
24 249004_at AT5G44570 unknown 0.621 0.212
25 267355_at AT2G39900 WLIM2a, WLIM2a 0.616 -0.098
26 250135_at AT5G15360 unknown 0.606 -0.697
27 260930_at AT1G02620 [Ras-related small GTP-binding family protein] 0.599 -0.061
28 262464_at AT1G50280 [Phototropic-responsive NPH3 family protein] 0.595 -0.047
29 249775_at AT5G24160 SQE6, squalene monoxygenase 6 0.590 -0.209
30 247463_at AT5G62210 [Embryo-specific protein 3, (ATS3)] 0.590 -0.279
31 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 0.588 0.042
32 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 0.587 -0.288
33 253532_at AT4G31570 unknown 0.587 -0.325
34 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.580 -0.100
35 248734_at AT5G48090 ELP1, EDM2-like protein1 0.576 -0.098
36 251919_at AT3G53800 Fes1B, Fes1B 0.574 -0.101
37 259522_at AT1G12490 [F-box associated ubiquitination effector family protein] 0.556 -0.057
38 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 0.529 -0.140
39 263979_at AT2G42840 PDF1, protodermal factor 1 0.511 -0.179
40 246011_at AT5G08330 AtTCP11, TCP11, TCP domain protein 11 0.504 -0.050
41 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 0.501 -0.102
42 253050_at AT4G37450 AGP18, arabinogalactan protein 18, ATAGP18 0.493 -0.058
43 257275_at AT3G14450 CID9, CTC-interacting domain 9 0.466 -0.281
44 246817_at AT5G27240 [DNAJ heat shock N-terminal domain-containing protein] 0.462 -0.179
45 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B 0.458 -0.304
46 254566_at AT4G19240 unknown 0.453 -0.594
47 262040_at AT1G80080 AtRLP17, Receptor Like Protein 17, TMM, TOO MANY MOUTHS 0.452 -0.123
48 262354_at AT1G64200 VHA-E3, vacuolar H+-ATPase subunit E isoform 3 0.452 -0.163
49 252447_at AT3G47040 [Glycosyl hydrolase family protein] 0.448 -0.017
50 257417_at AT1G10110 [F-box family protein] 0.444 -0.032
51 252345_at AT3G48640 unknown 0.443 0.508
52 266718_at AT2G46800 ATCDF1, A. THALIANA CATION DIFFUSION FACILITATOR 1, ATMTP1, MTP1, metal tolerance protein 1, OZS1, OVERLY ZINC SENSITIVE 1, ZAT, zinc transporter of Arabidopsis thaliana, ZAT1, ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1 0.430 -0.023
53 255613_at AT4G01270 [RING/U-box superfamily protein] 0.429 0.064
54 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 0.426 -0.110
55 263365_at AT2G20550 [HSP40/DnaJ peptide-binding protein] 0.423 -0.081
56 260151_at AT1G52910 unknown 0.422 -0.051
57 258356_at AT3G14340 unknown 0.422 -0.025
58 265057_at AT1G52140 unknown 0.416 -0.147
59 259912_at AT1G72670 iqd8, IQ-domain 8 0.415 -0.034
60 267266_at AT2G23150 ATNRAMP3, NRAMP3, natural resistance-associated macrophage protein 3 0.413 -0.029
61 255891_at AT1G17870 ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 0.412 -0.186
62 245454_at AT4G16920 [Disease resistance protein (TIR-NBS-LRR class) family] 0.407 -0.002
63 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 0.407 -0.071
64 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 0.395 -0.022
65 245929_at AT5G24760 [GroES-like zinc-binding dehydrogenase family protein] 0.394 -0.026
66 252997_at AT4G38400 ATEXLA2, expansin-like A2, ATEXPL2, ATHEXP BETA 2.2, EXLA2, expansin-like A2, EXPL2, EXPANSIN L2 0.391 -0.165
67 267019_at AT2G39130 [Transmembrane amino acid transporter family protein] 0.385 -0.093
68 246000_at AT5G20820 SAUR76, SMALL AUXIN UPREGULATED RNA 76 0.384 -0.044
69 261068_at AT1G07450 [NAD(P)-binding Rossmann-fold superfamily protein] 0.383 -0.157
70 257772_at AT3G23080 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.379 0.046
71 250437_at AT5G10430 AGP4, arabinogalactan protein 4, ATAGP4 0.377 -0.150
72 261984_at AT1G33760 [Integrase-type DNA-binding superfamily protein] 0.364 -0.088
73 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 0.357 -0.051
74 253729_at AT4G29360 [O-Glycosyl hydrolases family 17 protein] 0.349 -0.097
75 265587_at AT2G19980 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.343 -0.071
76 264852_at AT2G17480 ATMLO8, MILDEW RESISTANCE LOCUS O 8, MLO8, MILDEW RESISTANCE LOCUS O 8 0.341 0.012
77 264235_at AT1G54560 ATXIE, MYOSIN XI E, XIE 0.335 -0.000
78 246002_at AT5G20740 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.332 -0.010
79 265425_at AT2G20770 GCL2, GCR2-like 2 0.330 -0.048
80 261685_at AT1G47290 3BETAHSD/D1, 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1, AT3BETAHSD/D1, 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 0.328 -0.013
81 264104_at AT2G13750 [CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-17 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.326 0.014
82 265382_at AT2G16790 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.324 -0.080
83 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 0.324 -0.023
84 250133_at AT5G16400 ATF2, TRXF2, thioredoxin F2 0.320 -0.023
85 263688_at AT1G26920 unknown 0.319 -0.121
86 262920_at AT1G79500 AtkdsA1 0.317 -0.148
87 245574_at AT4G14750 IQD19, IQ-domain 19 0.314 0.031
88 265611_at AT2G25510 unknown -1.480 -0.017
89 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 -1.368 0.321
90 247684_at AT5G59670 [Leucine-rich repeat protein kinase family protein] -1.242 -0.126
91 265615_at AT2G25450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.182 -0.065
92 256940_at AT3G30720 QQS, QUA-QUINE STARCH -1.109 0.304
93 258027_at AT3G19515 unknown -1.027 -0.108
94 259559_at AT1G21240 WAK3, wall associated kinase 3 -0.980 0.790
95 245193_at AT1G67810 SUFE2, sulfur E2 -0.925 0.245
96 254894_at AT4G11840 PLDGAMMA3, phospholipase D gamma 3 -0.921 0.139
97 249639_at AT5G36930 [Disease resistance protein (TIR-NBS-LRR class) family] -0.899 0.356
98 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] -0.887 0.423
99 254481_at AT4G20480 [Putative endonuclease or glycosyl hydrolase] -0.868 0.167
100 250063_at AT5G17880 CSA1, constitutive shade-avoidance1 -0.822 0.269
101 245451_at AT4G16890 BAL, BALL, SNC1, SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 -0.816 0.131
102 252170_at AT3G50480 HR4, homolog of RPW8 4 -0.814 0.341
103 257625_at AT3G26230 CYP71B24, cytochrome P450, family 71, subfamily B, polypeptide 24 -0.812 0.315
104 256617_at AT3G22240 unknown -0.795 0.017
105 262615_at AT1G13950 ATELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A-1, EIF-5A, EIF5A, EUKARYOTIC ELONGATION FACTOR 5A, ELF5A-1, eukaryotic elongation factor 5A-1 -0.783 0.116
106 264893_at AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.780 0.427
107 254585_at AT4G19500 [nucleoside-triphosphatases] -0.774 0.258
108 264041_at AT2G03710 AGL3, AGAMOUS-like 3, SEP4, SEPALLATA 4 -0.766 0.127
109 262010_at AT1G35612 [expressed protein] -0.744 0.146
110 255627_at AT4G00955 unknown -0.720 0.157
111 248944_at AT5G45500 [RNI-like superfamily protein] -0.717 0.027
112 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 -0.696 0.197
113 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 -0.656 0.303
114 265917_at AT2G15080 AtRLP19, receptor like protein 19, RLP19, receptor like protein 19 -0.651 0.409
115 258113_at AT3G14650 CYP72A11, cytochrome P450, family 72, subfamily A, polypeptide 11 -0.646 0.015
116 262669_at AT1G62850 [Class I peptide chain release factor] -0.631 0.037
117 257741_at AT3G27340 unknown -0.621 0.122
118 252659_at AT3G44430 unknown -0.621 -0.148
119 248092_at AT5G55170 ATSUMO3, SUM3, SMALL UBIQUITIN-LIKE MODIFIER 3, SUMO 3, SMALL UBIQUITIN-LIKE MODIFIER 3, SUMO3, small ubiquitin-like modifier 3 -0.620 0.073
120 249124_at AT5G43740 [Disease resistance protein (CC-NBS-LRR class) family] -0.614 0.324
121 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] -0.606 0.052
122 258228_at AT3G27610 [Nucleotidylyl transferase superfamily protein] -0.596 0.240
123 252165_at AT3G50550 unknown -0.568 0.009
124 260005_at AT1G67920 unknown -0.567 0.245
125 248079_at AT5G55790 unknown -0.565 0.085
126 255319_at AT4G04220 AtRLP46, receptor like protein 46, RLP46, receptor like protein 46 -0.562 0.199
127 253422_at AT4G32240 unknown -0.559 -0.057
128 259529_at AT1G12400 [Nucleotide excision repair, TFIIH, subunit TTDA] -0.555 0.261
129 247988_at AT5G56910 [Proteinase inhibitor I25, cystatin, conserved region] -0.555 0.241
130 265245_at AT2G43060 AtIBH1, IBH1, ILI1 binding bHLH 1 -0.553 0.084
131 254586_at AT4G19510 [Disease resistance protein (TIR-NBS-LRR class)] -0.551 0.171
132 245384_at AT4G16790 [hydroxyproline-rich glycoprotein family protein] -0.551 0.208
133 250931_at AT5G03200 LUL1, LOG2-LIKE UBIQUITIN LIGASE1 -0.551 0.063
134 252593_at AT3G45590 ATSEN1, splicing endonuclease 1, SEN1, splicing endonuclease 1 -0.544 -0.041
135 251346_at AT3G60980 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.543 -0.233
136 245055_at AT2G26470 unknown -0.543 0.196
137 248060_at AT5G55560 [Protein kinase superfamily protein] -0.538 0.162
138 256568_at AT3G19520 unknown -0.533 -0.022
139 256303_at AT1G69550 [disease resistance protein (TIR-NBS-LRR class)] -0.533 0.130
140 255257_at AT4G05050 UBQ11, ubiquitin 11 -0.506 0.038
141 257824_at AT3G25290 [Auxin-responsive family protein] -0.485 0.317
142 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -0.482 -0.002
143 252282_at AT3G49360 PGL2, 6-phosphogluconolactonase 2 -0.481 0.081
144 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] -0.481 0.037
145 251037_at AT5G02100 ORP3A, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3A, UNE18, UNFERTILIZED EMBRYO SAC 18 -0.470 0.091
146 260966_at AT1G12220 RPS5, RESISTANT TO P. SYRINGAE 5 -0.466 0.049
147 247105_at AT5G66630 DAR5, DA1-related protein 5 -0.464 0.099
148 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 -0.463 0.102
149 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.463 -0.126
150 255260_at AT4G05040 [ankyrin repeat family protein] -0.460 -0.059
151 248726_at AT5G47960 ATRABA4C, RAB GTPase homolog A4C, RABA4C, RAB GTPase homolog A4C, SMG1, SMALL MOLECULAR WEIGHT G-PROTEIN 1 -0.455 0.236
152 249822_at AT5G23710 [DNA binding] -0.453 0.041
153 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 -0.446 0.377
154 254797_at AT4G13030 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.444 -0.004
155 260110_at AT1G63350 [Disease resistance protein (CC-NBS-LRR class) family] -0.438 0.204
156 264232_at AT1G67470 [Protein kinase superfamily protein] -0.438 0.045
157 261317_at AT1G53030 [Cytochrome C oxidase copper chaperone (COX17)] -0.428 -0.055
158 266659_at AT2G25850 PAPS2, poly(A) polymerase 2 -0.415 0.056
159 248315_at AT5G52630 MEF1, mitochondrial RNA editing factor 1 -0.411 -0.024
160 245807_at AT1G46768 RAP2.1, related to AP2 1 -0.408 -0.212
161 259934_at AT1G71340 AtGDPD4, GDPD4, glycerophosphodiester phosphodiesterase 4 -0.408 0.025
162 266480_at AT2G31130 unknown -0.407 0.001
163 264658_at AT1G09910 [Rhamnogalacturonate lyase family protein] -0.404 0.112
164 249838_at AT5G23460 unknown -0.400 0.066
165 259479_at AT1G19020 unknown -0.394 0.311
166 261561_at AT1G01730 unknown -0.373 0.040
167 248694_at AT5G48340 unknown -0.360 -0.076
168 247934_at AT5G57000 unknown -0.359 -0.122
169 266782_at AT2G29120 ATGLR2.7, glutamate receptor 2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, GLR2.7, glutamate receptor 2.7 -0.355 0.212
170 260189_at AT1G67550 URE, urease -0.347 0.033
171 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] -0.346 -0.105
172 247167_at AT5G65850 [F-box and associated interaction domains-containing protein] -0.346 0.159
173 262668_at AT1G62830 ATLSD1, ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATSWP1, LDL1, LSD1-like 1, LSD1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1 -0.340 0.023