4.0:Information of module
A. thaliana-A. halleri hybrid
In comparison with WT 24h cold help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0033692 cellular polysaccharide biosynthetic pro... BP 3.966e-04
GO:0005976 polysaccharide metabolic process BP 4.491e-04
GO:0015979 photosynthesis BP 4.517e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006952 defense response BP 1.991e-04
GO:0006950 response to stress BP 2.380e-04
GO:0098542 defense response to other organism BP 7.257e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
A. thaliana-A. halleri hybrid		 Log2 signal ratio
WT 24h cold
1 255471_at AT4G03050 AOP3 1.521 0.067
2 256096_at AT1G13650 unknown 1.358 -1.023
3 256460_at AT1G36240 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 1.211 0.055
4 253658_at AT4G30120 ATHMA3, A. THALIANA HEAVY METAL ATPASE 3, HMA3, heavy metal atpase 3 1.122 0.009
5 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 1.116 -0.040
6 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor 1.090 -0.016
7 250773_at AT5G05430 [RNA-binding protein] 1.046 0.042
8 266383_at AT2G14580 ATPRB1, basic pathogenesis-related protein 1, PRB1, basic pathogenesis-related protein 1 0.969 -0.083
9 267569_at AT2G30790 PSBP-2, photosystem II subunit P-2 0.843 -0.346
10 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.818 -0.015
11 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.811 0.210
12 251949_at AT3G53590 [Leucine-rich repeat protein kinase family protein] 0.781 -0.067
13 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 0.772 -0.020
14 250891_at AT5G04530 KCS19, 3-ketoacyl-CoA synthase 19 0.756 -0.169
15 249461_at AT5G39640 [Putative endonuclease or glycosyl hydrolase] 0.742 0.050
16 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.704 0.042
17 264940_at AT1G60470 AtGolS4, galactinol synthase 4, GolS4, galactinol synthase 4 0.703 0.132
18 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.699 -0.151
19 251620_at AT3G58060 [Cation efflux family protein] 0.678 0.022
20 262416_at AT1G49390 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.676 0.023
21 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.676 0.037
22 253754_at AT4G29020 [glycine-rich protein] 0.659 -0.021
23 264240_at AT1G54820 [Protein kinase superfamily protein] 0.622 -0.413
24 249004_at AT5G44570 unknown 0.621 -0.060
25 267355_at AT2G39900 WLIM2a, WLIM2a 0.616 -0.070
26 250135_at AT5G15360 unknown 0.606 -0.003
27 260930_at AT1G02620 [Ras-related small GTP-binding family protein] 0.599 -0.093
28 262464_at AT1G50280 [Phototropic-responsive NPH3 family protein] 0.595 -0.125
29 249775_at AT5G24160 SQE6, squalene monoxygenase 6 0.590 -0.568
30 247463_at AT5G62210 [Embryo-specific protein 3, (ATS3)] 0.590 0.311
31 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 0.588 -0.097
32 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 0.587 -0.519
33 253532_at AT4G31570 unknown 0.587 -0.007
34 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.580 0.047
35 248734_at AT5G48090 ELP1, EDM2-like protein1 0.576 0.054
36 251919_at AT3G53800 Fes1B, Fes1B 0.574 -0.532
37 259522_at AT1G12490 [F-box associated ubiquitination effector family protein] 0.556 0.003
38 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 0.529 -0.133
39 263979_at AT2G42840 PDF1, protodermal factor 1 0.511 -0.021
40 246011_at AT5G08330 AtTCP11, TCP11, TCP domain protein 11 0.504 -0.228
41 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 0.501 -0.318
42 253050_at AT4G37450 AGP18, arabinogalactan protein 18, ATAGP18 0.493 -0.082
43 257275_at AT3G14450 CID9, CTC-interacting domain 9 0.466 -0.005
44 246817_at AT5G27240 [DNAJ heat shock N-terminal domain-containing protein] 0.462 0.096
45 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B 0.458 0.970
46 254566_at AT4G19240 unknown 0.453 0.045
47 262040_at AT1G80080 AtRLP17, Receptor Like Protein 17, TMM, TOO MANY MOUTHS 0.452 0.023
48 262354_at AT1G64200 VHA-E3, vacuolar H+-ATPase subunit E isoform 3 0.452 -0.504
49 252447_at AT3G47040 [Glycosyl hydrolase family protein] 0.448 0.072
50 257417_at AT1G10110 [F-box family protein] 0.444 0.059
51 252345_at AT3G48640 unknown 0.443 0.231
52 266718_at AT2G46800 ATCDF1, A. THALIANA CATION DIFFUSION FACILITATOR 1, ATMTP1, MTP1, metal tolerance protein 1, OZS1, OVERLY ZINC SENSITIVE 1, ZAT, zinc transporter of Arabidopsis thaliana, ZAT1, ZINC TRANSPORTER OF ARABIDOPSIS THALIANA 1 0.430 -0.032
53 255613_at AT4G01270 [RING/U-box superfamily protein] 0.429 0.110
54 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 0.426 -0.245
55 263365_at AT2G20550 [HSP40/DnaJ peptide-binding protein] 0.423 0.021
56 260151_at AT1G52910 unknown 0.422 0.046
57 258356_at AT3G14340 unknown 0.422 0.085
58 265057_at AT1G52140 unknown 0.416 0.021
59 259912_at AT1G72670 iqd8, IQ-domain 8 0.415 -0.002
60 267266_at AT2G23150 ATNRAMP3, NRAMP3, natural resistance-associated macrophage protein 3 0.413 0.038
61 255891_at AT1G17870 ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 0.412 0.016
62 245454_at AT4G16920 [Disease resistance protein (TIR-NBS-LRR class) family] 0.407 -0.002
63 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 0.407 -0.160
64 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 0.395 -0.314
65 245929_at AT5G24760 [GroES-like zinc-binding dehydrogenase family protein] 0.394 -0.062
66 252997_at AT4G38400 ATEXLA2, expansin-like A2, ATEXPL2, ATHEXP BETA 2.2, EXLA2, expansin-like A2, EXPL2, EXPANSIN L2 0.391 0.472
67 267019_at AT2G39130 [Transmembrane amino acid transporter family protein] 0.385 0.192
68 246000_at AT5G20820 SAUR76, SMALL AUXIN UPREGULATED RNA 76 0.384 -0.183
69 261068_at AT1G07450 [NAD(P)-binding Rossmann-fold superfamily protein] 0.383 0.107
70 257772_at AT3G23080 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.379 -0.564
71 250437_at AT5G10430 AGP4, arabinogalactan protein 4, ATAGP4 0.377 -0.056
72 261984_at AT1G33760 [Integrase-type DNA-binding superfamily protein] 0.364 0.019
73 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 0.357 -0.017
74 253729_at AT4G29360 [O-Glycosyl hydrolases family 17 protein] 0.349 -0.062
75 265587_at AT2G19980 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.343 0.034
76 264852_at AT2G17480 ATMLO8, MILDEW RESISTANCE LOCUS O 8, MLO8, MILDEW RESISTANCE LOCUS O 8 0.341 -0.079
77 264235_at AT1G54560 ATXIE, MYOSIN XI E, XIE 0.335 -0.053
78 246002_at AT5G20740 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.332 -0.054
79 265425_at AT2G20770 GCL2, GCR2-like 2 0.330 0.022
80 261685_at AT1G47290 3BETAHSD/D1, 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1, AT3BETAHSD/D1, 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 1 0.328 -0.100
81 264104_at AT2G13750 [CACTA-like transposase family (Ptta/En/Spm), has a 2.5e-17 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.326 0.047
82 265382_at AT2G16790 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.324 -0.156
83 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 0.324 -0.347
84 250133_at AT5G16400 ATF2, TRXF2, thioredoxin F2 0.320 -0.217
85 263688_at AT1G26920 unknown 0.319 -0.185
86 262920_at AT1G79500 AtkdsA1 0.317 -0.036
87 245574_at AT4G14750 IQD19, IQ-domain 19 0.314 -0.109
88 265611_at AT2G25510 unknown -1.480 0.040
89 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 -1.368 -0.043
90 247684_at AT5G59670 [Leucine-rich repeat protein kinase family protein] -1.242 0.089
91 265615_at AT2G25450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -1.182 0.032
92 256940_at AT3G30720 QQS, QUA-QUINE STARCH -1.109 -0.293
93 258027_at AT3G19515 unknown -1.027 0.013
94 259559_at AT1G21240 WAK3, wall associated kinase 3 -0.980 0.384
95 245193_at AT1G67810 SUFE2, sulfur E2 -0.925 -0.064
96 254894_at AT4G11840 PLDGAMMA3, phospholipase D gamma 3 -0.921 0.033
97 249639_at AT5G36930 [Disease resistance protein (TIR-NBS-LRR class) family] -0.899 -0.114
98 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] -0.887 -0.078
99 254481_at AT4G20480 [Putative endonuclease or glycosyl hydrolase] -0.868 0.082
100 250063_at AT5G17880 CSA1, constitutive shade-avoidance1 -0.822 -0.137
101 245451_at AT4G16890 BAL, BALL, SNC1, SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 -0.816 -0.003
102 252170_at AT3G50480 HR4, homolog of RPW8 4 -0.814 -0.055
103 257625_at AT3G26230 CYP71B24, cytochrome P450, family 71, subfamily B, polypeptide 24 -0.812 -0.198
104 256617_at AT3G22240 unknown -0.795 -0.019
105 262615_at AT1G13950 ATELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A-1, EIF-5A, EIF5A, EUKARYOTIC ELONGATION FACTOR 5A, ELF5A-1, eukaryotic elongation factor 5A-1 -0.783 -0.162
106 264893_at AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.780 0.252
107 254585_at AT4G19500 [nucleoside-triphosphatases] -0.774 -0.275
108 264041_at AT2G03710 AGL3, AGAMOUS-like 3, SEP4, SEPALLATA 4 -0.766 0.054
109 262010_at AT1G35612 [expressed protein] -0.744 -0.310
110 255627_at AT4G00955 unknown -0.720 0.221
111 248944_at AT5G45500 [RNI-like superfamily protein] -0.717 -0.109
112 254255_at AT4G23220 CRK14, cysteine-rich RLK (RECEPTOR-like protein kinase) 14 -0.696 0.237
113 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 -0.656 0.193
114 265917_at AT2G15080 AtRLP19, receptor like protein 19, RLP19, receptor like protein 19 -0.651 -0.300
115 258113_at AT3G14650 CYP72A11, cytochrome P450, family 72, subfamily A, polypeptide 11 -0.646 -0.087
116 262669_at AT1G62850 [Class I peptide chain release factor] -0.631 -0.069
117 257741_at AT3G27340 unknown -0.621 -0.030
118 252659_at AT3G44430 unknown -0.621 0.085
119 248092_at AT5G55170 ATSUMO3, SUM3, SMALL UBIQUITIN-LIKE MODIFIER 3, SUMO 3, SMALL UBIQUITIN-LIKE MODIFIER 3, SUMO3, small ubiquitin-like modifier 3 -0.620 -0.100
120 249124_at AT5G43740 [Disease resistance protein (CC-NBS-LRR class) family] -0.614 0.144
121 255546_at AT4G01910 [Cysteine/Histidine-rich C1 domain family protein] -0.606 0.065
122 258228_at AT3G27610 [Nucleotidylyl transferase superfamily protein] -0.596 -0.127
123 252165_at AT3G50550 unknown -0.568 0.171
124 260005_at AT1G67920 unknown -0.567 0.352
125 248079_at AT5G55790 unknown -0.565 -0.182
126 255319_at AT4G04220 AtRLP46, receptor like protein 46, RLP46, receptor like protein 46 -0.562 0.162
127 253422_at AT4G32240 unknown -0.559 -0.141
128 259529_at AT1G12400 [Nucleotide excision repair, TFIIH, subunit TTDA] -0.555 -0.093
129 247988_at AT5G56910 [Proteinase inhibitor I25, cystatin, conserved region] -0.555 0.032
130 265245_at AT2G43060 AtIBH1, IBH1, ILI1 binding bHLH 1 -0.553 -0.126
131 254586_at AT4G19510 [Disease resistance protein (TIR-NBS-LRR class)] -0.551 -0.092
132 245384_at AT4G16790 [hydroxyproline-rich glycoprotein family protein] -0.551 0.009
133 250931_at AT5G03200 LUL1, LOG2-LIKE UBIQUITIN LIGASE1 -0.551 0.086
134 252593_at AT3G45590 ATSEN1, splicing endonuclease 1, SEN1, splicing endonuclease 1 -0.544 0.068
135 251346_at AT3G60980 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.543 0.231
136 245055_at AT2G26470 unknown -0.543 -0.006
137 248060_at AT5G55560 [Protein kinase superfamily protein] -0.538 0.082
138 256568_at AT3G19520 unknown -0.533 -0.032
139 256303_at AT1G69550 [disease resistance protein (TIR-NBS-LRR class)] -0.533 -0.126
140 255257_at AT4G05050 UBQ11, ubiquitin 11 -0.506 -0.020
141 257824_at AT3G25290 [Auxin-responsive family protein] -0.485 -0.140
142 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -0.482 -0.077
143 252282_at AT3G49360 PGL2, 6-phosphogluconolactonase 2 -0.481 -0.098
144 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] -0.481 -0.162
145 251037_at AT5G02100 ORP3A, OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3A, UNE18, UNFERTILIZED EMBRYO SAC 18 -0.470 -0.061
146 260966_at AT1G12220 RPS5, RESISTANT TO P. SYRINGAE 5 -0.466 -0.091
147 247105_at AT5G66630 DAR5, DA1-related protein 5 -0.464 0.126
148 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 -0.463 -0.057
149 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.463 0.051
150 255260_at AT4G05040 [ankyrin repeat family protein] -0.460 -0.034
151 248726_at AT5G47960 ATRABA4C, RAB GTPase homolog A4C, RABA4C, RAB GTPase homolog A4C, SMG1, SMALL MOLECULAR WEIGHT G-PROTEIN 1 -0.455 0.089
152 249822_at AT5G23710 [DNA binding] -0.453 0.048
153 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 -0.446 0.035
154 254797_at AT4G13030 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.444 0.000
155 260110_at AT1G63350 [Disease resistance protein (CC-NBS-LRR class) family] -0.438 -0.114
156 264232_at AT1G67470 [Protein kinase superfamily protein] -0.438 0.056
157 261317_at AT1G53030 [Cytochrome C oxidase copper chaperone (COX17)] -0.428 -0.018
158 266659_at AT2G25850 PAPS2, poly(A) polymerase 2 -0.415 0.012
159 248315_at AT5G52630 MEF1, mitochondrial RNA editing factor 1 -0.411 0.204
160 245807_at AT1G46768 RAP2.1, related to AP2 1 -0.408 0.654
161 259934_at AT1G71340 AtGDPD4, GDPD4, glycerophosphodiester phosphodiesterase 4 -0.408 0.052
162 266480_at AT2G31130 unknown -0.407 0.084
163 264658_at AT1G09910 [Rhamnogalacturonate lyase family protein] -0.404 -0.073
164 249838_at AT5G23460 unknown -0.400 -0.008
165 259479_at AT1G19020 unknown -0.394 0.128
166 261561_at AT1G01730 unknown -0.373 -0.017
167 248694_at AT5G48340 unknown -0.360 0.050
168 247934_at AT5G57000 unknown -0.359 -0.198
169 266782_at AT2G29120 ATGLR2.7, glutamate receptor 2.7, GLR2.7, GLUTAMATE RECEPTOR 2.7, GLR2.7, glutamate receptor 2.7 -0.355 0.175
170 260189_at AT1G67550 URE, urease -0.347 -0.110
171 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] -0.346 0.255
172 247167_at AT5G65850 [F-box and associated interaction domains-containing protein] -0.346 -0.012
173 262668_at AT1G62830 ATLSD1, ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATSWP1, LDL1, LSD1-like 1, LSD1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1 -0.340 0.001