4.0:Information of module
gtl1
In comparison with Cd 24h root help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0016192 vesicle-mediated transport BP 9.674e-05
GO:0007264 small GTPase mediated signal transductio... BP 1.366e-04
GO:0015031 protein transport BP 1.210e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0060429 epithelium development BP 7.729e-04
GO:0043473 pigmentation BP 1.364e-03
GO:0043476 pigment accumulation BP 1.364e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
gtl1		 Log2 signal ratio
Cd 24h root
1 248218_at AT5G53710 unknown 0.699 -0.290
2 251746_at AT3G56060 [Glucose-methanol-choline (GMC) oxidoreductase family protein] 0.654 -0.015
3 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.617 0.091
4 247129_at AT5G66150 [Glycosyl hydrolase family 38 protein] 0.568 -0.014
5 247050_at AT5G66660 unknown 0.563 -0.032
6 245036_at AT2G26410 Iqd4, IQ-domain 4 0.550 0.024
7 257061_at AT3G18250 [Putative membrane lipoprotein] 0.544 0.058
8 267032_at AT2G38490 CIPK22, CBL-interacting protein kinase 22, SnRK3.19, SNF1-RELATED PROTEIN KINASE 3.19 0.515 -0.017
9 251491_at AT3G59480 [pfkB-like carbohydrate kinase family protein] 0.495 0.059
10 262595_at AT1G15360 AtSHN1, SHN1, SHINE 1, WIN1, WAX INDUCER 1 0.490 0.017
11 247718_at AT5G59310 LTP4, lipid transfer protein 4 0.489 -0.227
12 254754_at AT4G13210 [Pectin lyase-like superfamily protein] 0.488 -0.017
13 247344_at AT5G63750 ARI13, ARIADNE 13, ATARI13, ARABIDOPSIS ARIADNE 13 0.470 0.033
14 247568_at AT5G61260 [Plant calmodulin-binding protein-related] 0.468 0.049
15 259813_at AT1G49860 ATGSTF14, glutathione S-transferase (class phi) 14, GSTF14, glutathione S-transferase (class phi) 14 0.453 -0.026
16 265261_at AT2G42990 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.440 -0.002
17 265441_at AT2G20870 [cell wall protein precursor, putative] 0.405 -0.016
18 260495_at AT2G41810 unknown 0.405 0.005
19 255531_at AT4G02160 unknown 0.395 -0.061
20 255550_at AT4G01970 AtSTS, stachyose synthase, RS4, raffinose synthase 4, STS, stachyose synthase 0.392 0.058
21 249045_at AT5G44380 [FAD-binding Berberine family protein] 0.319 -0.042
22 262640_at AT1G62760 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.317 -0.043
23 248154_at AT5G54400 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.313 -0.003
24 249775_at AT5G24160 SQE6, squalene monoxygenase 6 0.307 0.091
25 263458_at AT2G22290 ATRAB-H1D, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, ATRAB6, ARABIDOPSIS RAB GTPASE HOMOLOG 6, ATRABH1D, RAB GTPase homolog H1D, RAB-H1D, RAB GTPASE HOMOLOG H1D, RABH1d, RAB GTPase homolog H1D 0.301 0.029
26 249186_at AT5G43040 [Cysteine/Histidine-rich C1 domain family protein] 0.299 0.007
27 254201_at AT4G24130 unknown 0.294 -0.058
28 266140_at AT2G28120 [Major facilitator superfamily protein] 0.288 0.077
29 246831_at AT5G26340 ATSTP13, SUGAR TRANSPORT PROTEIN 13, MSS1, STP13, SUGAR TRANSPORT PROTEIN 13 0.285 -0.015
30 249561_at AT5G38340 [Disease resistance protein (TIR-NBS-LRR class) family] 0.284 0.006
31 260887_at AT1G29160 [Dof-type zinc finger DNA-binding family protein] 0.277 -0.331
32 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 0.276 0.138
33 252253_at AT3G49300 [proline-rich family protein] 0.266 0.004
34 263693_at AT1G31200 ATPP2-A9, phloem protein 2-A9, PP2-A9, phloem protein 2-A9 0.251 0.056
35 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.250 0.065
36 245181_at AT5G12420 [O-acyltransferase (WSD1-like) family protein] 0.247 -0.067
37 256349_at AT1G54890 [Late embryogenesis abundant (LEA) protein-related] 0.233 -0.003
38 261075_at AT1G07280 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.231 0.090
39 245507_at AT4G15710 unknown 0.230 -0.002
40 257217_at AT3G14940 ATPPC3, phosphoenolpyruvate carboxylase 3, PPC3, phosphoenolpyruvate carboxylase 3 0.224 0.080
41 264369_at AT1G70430 [Protein kinase superfamily protein] 0.220 0.090
42 266536_at AT2G16900 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.214 -0.067
43 247035_at AT5G67110 ALC, ALCATRAZ 0.207 0.034
44 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.205 -0.051
45 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 0.203 0.012
46 247146_at AT5G65610 unknown 0.201 -0.017
47 251725_at AT3G56260 unknown 0.200 -0.104
48 262830_at AT1G14700 ATPAP3, PAP3, purple acid phosphatase 3 0.193 0.121
49 262649_at AT1G14040 [EXS (ERD1/XPR1/SYG1) family protein] 0.188 -0.030
50 266865_at AT2G29980 AtFAD3, FAD3, fatty acid desaturase 3 0.184 -0.125
51 248853_at AT5G46570 BSK2, brassinosteroid-signaling kinase 2 0.182 -0.053
52 258419_at AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] 0.181 -0.034
53 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A 0.176 0.025
54 264066_at AT2G27880 AGO5, ARGONAUTE 5, AtAGO5 0.176 0.048
55 259752_at AT1G71040 LPR2, Low Phosphate Root2 0.174 0.131
56 246755_at AT5G27920 [F-box family protein] 0.173 -0.093
57 265689_at AT2G24310 unknown 0.172 0.019
58 258209_at AT3G14060 unknown 0.170 -0.137
59 262922_at AT1G79420 unknown 0.170 0.099
60 249378_at AT5G40450 unknown 0.170 0.057
61 252204_at AT3G50340 unknown 0.170 -0.019
62 245314_at AT4G16745 [Exostosin family protein] 0.169 0.105
63 253253_at AT4G34750 SAUR49, SMALL AUXIN UPREGULATED RNA 49 0.168 -0.002
64 263892_at AT2G36890 ATMYB38, MYB DOMAIN PROTEIN 38, BIT1, BLUE INSENSITIVE TRAIT 1, MYB38, MYB DOMAIN PROTEIN 38, RAX2, REGULATOR OF AXILLARY MERISTEMS 2 0.167 -0.065
65 251522_at AT3G59430 unknown 0.167 0.022
66 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 0.166 -0.088
67 246302_at AT3G51860 ATCAX3, ATHCX1, CAX1-LIKE, CAX3, cation exchanger 3 0.165 -0.022
68 250860_at AT5G04770 ATCAT6, ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, CAT6, cationic amino acid transporter 6 0.165 -0.085
69 247145_at AT5G65600 LecRK-IX.2, L-type lectin receptor kinase IX.2 0.165 -0.106
70 261594_at AT1G33240 AT-GTL1, GT2-LIKE 1, ATGTL1, GTL1, GT-2-like 1 -0.818 0.164
71 247754_at AT5G59080 unknown -0.609 0.212
72 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 -0.575 0.574
73 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] -0.535 -0.023
74 252312_at AT3G49380 iqd15, IQ-domain 15 -0.509 -0.003
75 255768_at AT1G16705 [p300/CBP acetyltransferase-related protein-related] -0.439 -0.031
76 247199_at AT5G65210 TGA1, TGACG sequence-specific binding protein 1 -0.417 0.123
77 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a -0.415 -0.116
78 257810_at AT3G27070 TOM20-1, translocase outer membrane 20-1 -0.411 -0.017
79 265119_at AT1G62570 FMO GS-OX4, flavin-monooxygenase glucosinolate S-oxygenase 4 -0.375 0.023
80 259026_at AT3G09240 BSK9, brassinosteroid-signaling kinase 9 -0.360 0.080
81 248197_at AT5G54190 PORA, protochlorophyllide oxidoreductase A -0.351 0.256
82 262137_at AT1G77920 TGA7, TGACG sequence-specific binding protein 7 -0.347 0.027
83 265122_at AT1G62540 FMO GS-OX2, flavin-monooxygenase glucosinolate S-oxygenase 2 -0.327 0.144
84 267238_at AT2G44130 KMD3, KISS ME DEADLY 3 -0.326 0.260
85 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 -0.307 0.255
86 246781_at AT5G27350 SFP1 -0.307 0.116
87 252537_at AT3G45710 [Major facilitator superfamily protein] -0.300 0.046
88 258591_at AT3G04360 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.285 -0.049
89 263284_at AT2G36100 CASP1, Casparian strip membrane domain protein 1 -0.265 0.041
90 247921_at AT5G57660 ATCOL5, BBX6, B-box domain protein 6, COL5, CONSTANS-like 5 -0.260 0.191
91 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 -0.259 0.399
92 246664_at AT5G34800 [pseudogene] -0.252 0.014
93 257221_at AT3G27920 ATGL1, ATMYB0, myb domain protein 0, GL1, GLABRA 1, MYB0, myb domain protein 0 -0.250 0.044
94 262827_at AT1G13100 CYP71B29, cytochrome P450, family 71, subfamily B, polypeptide 29 -0.244 0.130
95 266672_at AT2G29650 ANTR1, anion transporter 1, PHT4;1, phosphate transporter 4;1 -0.244 0.164
96 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.238 0.378
97 254998_at AT4G09760 [Protein kinase superfamily protein] -0.234 0.147
98 264352_at AT1G03270 unknown -0.222 -0.062
99 262682_at AT1G75900 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.221 -0.117
100 264814_at AT2G17900 ASHR1, ASH1-related 1, SDG37, SET domain group 37 -0.219 0.071
101 266508_at AT2G47920 NET3C, Networked 3C -0.210 0.025
102 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.210 0.548
103 254594_at AT4G18930 [RNA ligase/cyclic nucleotide phosphodiesterase family protein] -0.209 0.030
104 267509_at AT2G45660 AGL20, AGAMOUS-like 20, ATSOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1, SOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1 -0.206 0.046
105 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.204 0.042
106 249645_at AT5G36910 THI2.2, thionin 2.2 -0.203 0.396
107 245871_at AT1G26290 unknown -0.200 -0.032
108 253806_at AT4G28270 ATRMA2, RMA2, RING membrane-anchor 2 -0.199 -0.012
109 265545_at AT2G28250 NCRK -0.197 0.042
110 264616_at AT2G17740 [Cysteine/Histidine-rich C1 domain family protein] -0.197 0.165
111 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 -0.192 0.177
112 248160_at AT5G54470 BBX29, B-box domain protein 29 -0.189 0.307
113 263607_at AT2G16270 unknown -0.182 0.059
114 251544_at AT3G58790 GAUT15, galacturonosyltransferase 15 -0.180 -0.081
115 264590_at AT2G17710 unknown -0.177 0.126
116 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 -0.175 -0.075
117 247576_at AT5G61280 [Remorin family protein] -0.175 0.025
118 247352_at AT5G63650 SNRK2-5, SNRK2.5, SNF1-related protein kinase 2.5, SRK2H, SNF1-RELATED PROTEIN KINASE 2H -0.174 0.042
119 263441_at AT2G28620 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.167 0.056
120 247628_at AT5G60400 unknown -0.163 -0.042
121 251761_at AT3G55700 [UDP-Glycosyltransferase superfamily protein] -0.160 -0.061
122 260167_at AT1G71970 unknown -0.157 0.268
123 261772_at AT1G76240 unknown -0.151 0.261
124 262470_at AT1G50180 [NB-ARC domain-containing disease resistance protein] -0.148 0.018
125 250974_at AT5G02820 BIN5, BRASSINOSTEROID INSENSITIVE 5, RHL2, ROOT HAIRLESS 2 -0.146 -0.056
126 255538_at AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -0.146 0.041
127 254608_at AT4G18910 ATNLM2, NOD26-LIKE INTRINSIC PROTEIN 2, NIP1;2, NOD26-like intrinsic protein 1;2, NLM2, NOD26-LIKE INTRINSIC PROTEIN 2 -0.142 -0.044
128 251814_at AT3G54890 LHCA1, photosystem I light harvesting complex gene 1 -0.141 0.024
129 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 -0.140 0.169
130 267077_at AT2G40970 MYBC1 -0.138 0.110
131 251785_at AT3G55130 ABCG19, ATP-binding cassette G19, ATWBC19, white-brown complex homolog 19, WBC19, white-brown complex homolog 19 -0.137 0.053
132 246380_at AT1G57750 CYP96A15, cytochrome P450, family 96, subfamily A, polypeptide 15, MAH1, MID-CHAIN ALKANE HYDROXYLASE 1 -0.135 -0.029
133 251941_at AT3G53470 unknown -0.132 0.114
134 265336_at AT2G18290 APC10, anaphase promoting complex 10, AtAPC10, EMB2783, EMBRYO DEFECTIVE 2783 -0.132 0.046
135 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 -0.130 0.372
136 260073_at AT1G73660 SIS8, SUGAR INSENSITIVE 8 -0.130 0.175
137 252149_at AT3G51290 APSR1, Altered Phosphate Starvation Response 1 -0.125 0.032