4.0:Information of module
WT (Col-0) inflorescence well-watered day 5
In comparison with ddm1-2 rdr6-15 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.187e-05
GO:0006085 acetyl-CoA biosynthetic process BP 3.731e-04
GO:0035384 thioester biosynthetic process BP 3.731e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 2.820e-16
GO:0044249 cellular biosynthetic process BP 2.133e-11
GO:0006412 translation BP 4.546e-11
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT (Col-0) inflorescence well-watered day 5		 Log2 signal ratio
ddm1-2 rdr6-15
1 244934_at ATCG01080 NDHG 0.490 -0.069
2 244933_at ATCG01070 NDHE 0.484 -0.076
3 244994_at ATCG01010 NDHF 0.436 -0.177
4 244932_at ATCG01060 PSAC 0.418 -0.046
5 264127_at AT1G79250 AGC1.7, AGC kinase 1.7 0.417 -0.235
6 267458_at AT2G33670 ATMLO5, MILDEW RESISTANCE LOCUS O 5, MLO5, MILDEW RESISTANCE LOCUS O 5 0.405 -0.160
7 257850_at AT3G13065 SRF4, STRUBBELIG-receptor family 4 0.390 -0.235
8 250204_at AT5G13990 ATEXO70C2, exocyst subunit exo70 family protein C2, EXO70C2, exocyst subunit exo70 family protein C2 0.349 -0.613
9 247447_at AT5G62730 [Major facilitator superfamily protein] 0.322 -0.022
10 265539_at AT2G15830 unknown 0.311 0.035
11 257065_at AT3G18220 LPP4, lipid phosphate phosphatase 4 0.308 -0.453
12 262047_at AT1G80160 GLYI7, glyoxylase I 7 0.304 -0.240
13 249941_at AT5G22270 unknown 0.298 0.036
14 263011_at AT1G23250 [Caleosin-related family protein] 0.295 -0.130
15 254104_at AT4G25040 [Uncharacterised protein family (UPF0497)] 0.291 -0.386
16 253582_at AT4G30670 [Putative membrane lipoprotein] 0.286 -0.157
17 262707_at AT1G16290 unknown 0.284 -0.420
18 254240_at AT4G23496 SP1L5, SPIRAL1-like5 0.278 0.149
19 267168_at AT2G37770 AKR4C9, Aldo-keto reductase family 4 member C9, ChlAKR, Chloroplastic aldo-keto reductase 0.277 -0.149
20 264139_at AT1G78940 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] 0.270 -0.560
21 245979_at AT5G13150 ATEXO70C1, exocyst subunit exo70 family protein C1, EXO70C1, exocyst subunit exo70 family protein C1 0.267 -0.288
22 261235_x_at AT1G32840 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G14130.1)] 0.265 0.408
23 249761_at AT5G23970 [HXXXD-type acyl-transferase family protein] 0.254 0.177
24 259607_at AT1G27940 ABCB13, ATP-binding cassette B13, PGP13, P-glycoprotein 13 0.249 -0.305
25 263108_at AT1G65240 [Eukaryotic aspartyl protease family protein] 0.244 -0.251
26 246967_at AT5G24860 ATFPF1, ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, FPF1, FLOWERING PROMOTING FACTOR 1 0.235 -0.657
27 264387_at AT1G11990 [O-fucosyltransferase family protein] 0.232 0.014
28 249559_at AT5G38320 unknown 0.230 0.099
29 260841_at AT1G29195 unknown 0.225 -0.059
30 248484_at AT5G51030 [NAD(P)-binding Rossmann-fold superfamily protein] 0.223 -0.411
31 264053_at AT2G22560 NET2D, Networked 2D 0.222 -0.173
32 252004_at AT3G52780 ATPAP20, PAP20 0.219 -0.443
33 251870_at AT3G54510 [Early-responsive to dehydration stress protein (ERD4)] 0.217 0.047
34 244974_at ATCG00700 PSBN, photosystem II reaction center protein N 0.216 0.077
35 260032_at AT1G68750 ATPPC4, phosphoenolpyruvate carboxylase 4, PPC4, phosphoenolpyruvate carboxylase 4 0.216 0.013
36 246555_at AT5G15470 GAUT14, galacturonosyltransferase 14 0.216 -0.157
37 265331_at AT2G18420 [Gibberellin-regulated family protein] 0.211 -0.198
38 245025_at ATCG00130 ATPF 0.208 -0.124
39 258890_at AT3G05690 ATHAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, HAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, NF-YA2, nuclear factor Y, subunit A2, UNE8, UNFERTILIZED EMBRYO SAC 8 0.206 0.009
40 249709_at AT5G35670 iqd33, IQ-domain 33 0.203 -0.003
41 262626_at AT1G06430 FTSH8, FTSH protease 8 0.200 -0.087
42 261366_at AT1G53100 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.199 -0.252
43 259888_at AT1G76350 NLP5, NIN-like protein 5 0.198 0.021
44 264479_at AT1G77280 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] 0.191 -0.175
45 247519_at AT5G61430 ANAC100, NAC domain containing protein 100, ATNAC5, NAC100, NAC domain containing protein 100 0.190 -0.174
46 251107_at AT5G01610 unknown 0.187 -0.319
47 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 0.185 -0.048
48 248855_at AT5G46590 anac096, NAC domain containing protein 96, NAC096, NAC domain containing protein 96 0.181 -0.063
49 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 0.180 -0.094
50 250131_at AT5G16550 unknown 0.177 -0.029
51 266549_at AT2G35150 EXL7, EXORDIUM LIKE 7 0.173 -0.026
52 250400_at AT5G10740 [Protein phosphatase 2C family protein] 0.172 -0.119
53 262905_at AT1G59730 ATH7, thioredoxin H-type 7, TH7, thioredoxin H-type 7 0.170 -0.020
54 251711_at AT3G56960 PIP5K4, phosphatidyl inositol monophosphate 5 kinase 4 0.170 -0.248
55 253614_at AT4G30350 SMXL2, SMAX1-like 2 0.167 -0.132
56 266320_at AT2G46640 TAC1, Tiller Angle Control 1 0.162 -0.305
57 253358_at AT4G32940 GAMMA-VPE, gamma vacuolar processing enzyme, GAMMAVPE 0.162 -0.116
58 246239_at AT4G36790 [Major facilitator superfamily protein] 0.162 -0.099
59 262635_at AT1G06570 HPD, 4-hydroxyphenylpyruvate dioxygenase, HPPD, 4-hydroxyphenylpyruvate dioxygenase, PDS1, phytoene desaturation 1 0.162 -0.082
60 259596_at AT1G28130 GH3.17 0.160 -0.209
61 245517_at AT4G15840 [BTB/POZ domain-containing protein] 0.158 -0.068
62 250249_at AT5G13760 [Plasma-membrane choline transporter family protein] 0.156 -0.002
63 264482_at AT1G77210 AtSTP14, sugar transport protein 14, STP14, sugar transport protein 14 0.155 0.027
64 259346_at AT3G03910 glutamate dehydrogenase 3 0.154 0.058
65 267144_at AT2G38110 ATGPAT6, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 6, GPAT6, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 6 0.154 -0.067
66 261786_at AT1G15990 ATCNGC7, cyclic nucleotide gated channel 7, CNGC7, cyclic nucleotide gated channel 7 0.153 -0.097
67 261151_at AT1G19650 [Sec14p-like phosphatidylinositol transfer family protein] 0.151 0.053
68 258452_at AT3G22370 AOX1A, alternative oxidase 1A, ATAOX1A, AtHSR3, HSR3, hyper-sensitivity-related 3 0.151 -0.132
69 247546_at AT5G61605 unknown 0.146 -0.327
70 267181_at AT2G37760 AKR4C8, Aldo-keto reductase family 4 member C8 0.144 -0.085
71 254936_at AT4G10790 [UBX domain-containing protein] 0.141 0.004
72 261594_at AT1G33240 AT-GTL1, GT2-LIKE 1, ATGTL1, GTL1, GT-2-like 1 0.141 0.110
73 255838_at AT2G33490 [hydroxyproline-rich glycoprotein family protein] 0.141 -0.042
74 247880_at AT5G57780 P1R1, P1R1 0.138 0.167
75 260997_at AT1G26610 [C2H2-like zinc finger protein] 0.138 0.076
76 258078_at AT3G25870 unknown 0.137 -0.098
77 266968_at AT2G39360 [Protein kinase superfamily protein] 0.137 -0.126
78 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase 0.137 -0.251
79 259730_at AT1G77660 [Histone H3 K4-specific methyltransferase SET7/9 family protein] 0.136 -0.120
80 251739_at AT3G56170 CAN, Ca-2+ dependent nuclease, CAN1, calcium dependent nuclease 1 0.134 -0.122
81 247885_at AT5G57830 unknown 0.134 -0.307
82 264548_at AT1G55680 [Transducin/WD40 repeat-like superfamily protein] 0.131 -0.052
83 266318_at AT2G27110 FRS3, FAR1-related sequence 3 0.130 0.125
84 266566_at AT2G24040 [Low temperature and salt responsive protein family] 0.130 -0.291
85 260828_at AT1G06750 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.126 -0.096
86 267134_at AT2G23450 [Protein kinase superfamily protein] 0.126 -0.204
87 248580_at AT5G49890 ATCLC-C, CLC-C, chloride channel C 0.125 -0.119
88 247323_at AT5G64170 LNK1, night light-inducible and clock-regulated 1 0.122 0.023
89 245108_at AT2G41510 ATCKX1, CYTOKININ OXIDASE/DEHYDROGENASE 1, CKX1, cytokinin oxidase/dehydrogenase 1 0.122 -0.028
90 251523_at AT3G58975 [expressed protein] 0.122 -0.015
91 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 0.119 0.073
92 253365_at AT4G33170 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.119 0.040
93 246681_at AT5G33280 [Voltage-gated chloride channel family protein] 0.119 0.006
94 254301_at AT4G22790 [MATE efflux family protein] 0.118 -0.148
95 261401_at AT1G79640 [Protein kinase superfamily protein] 0.114 -0.303
96 249821_at AT5G23690 [Polynucleotide adenylyltransferase family protein] 0.113 -0.072
97 245840_at AT1G58420 [Uncharacterised conserved protein UCP031279] 0.113 -0.177
98 255345_at AT4G04460 [Saposin-like aspartyl protease family protein] 0.113 -0.138
99 260320_at AT1G63930 ROH1, from the Czech 'roh' meaning 'corner' 0.112 -0.224
100 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 0.112 0.032
101 264937_at AT1G61130 SCPL32, serine carboxypeptidase-like 32 0.112 0.150
102 255327_at AT4G04320 [malonyl-CoA decarboxylase family protein] 0.111 -0.037
103 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.111 0.062
104 265419_at AT2G20840 AtSCAMP3, SCAMP3, Secretory carrier membrane protein 3 0.109 -0.068
105 265385_at AT2G20900 ATDGK5, DGK5, diacylglycerol kinase 5 0.109 -0.120
106 261946_at AT1G64560 -0.659 0.027
107 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -0.582 -0.085
108 250828_at AT5G05250 unknown -0.576 0.042
109 247543_at AT5G61600 ERF104, ethylene response factor 104 -0.573 0.038
110 262399_at AT1G49500 unknown -0.546 0.089
111 247649_at AT5G60030 unknown -0.537 0.156
112 258289_at AT3G23450 unknown -0.526 -0.035
113 244997_at ATCG00170 RPOC2 -0.513 0.044
114 245024_at ATCG00120 ATPA, ATP synthase subunit alpha -0.453 0.016
115 249754_at AT5G24530 DMR6, DOWNY MILDEW RESISTANT 6 -0.430 0.090
116 244929_at ATMG00580 NAD4, NADH dehydrogenase subunit 4 -0.400 0.055
117 244921_s_at ATMG01000 ORF114 -0.391 -0.030
118 263605_at AT2G16485 NERD, Needed for RDR2-independent DNA methylation -0.381 -0.180
119 253082_at AT4G36230 unknown -0.343 0.206
120 250942_at AT5G03350 [Legume lectin family protein] -0.337 0.460
121 267545_at AT2G32690 ATGRP23, GLYCINE-RICH PROTEIN 23, GRP23, glycine-rich protein 23 -0.325 -0.077
122 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.308 0.150
123 260266_at AT1G68520 BBX14, B-box domain protein 14 -0.286 0.136
124 245050_at ATCG00070 PSBK, photosystem II reaction center protein K precursor -0.283 -0.027
125 260689_at AT1G32290 unknown -0.282 0.012
126 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A -0.276 -0.043
127 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.275 0.070
128 251610_at AT3G57930 unknown -0.269 0.081
129 244996_at ATCG00160 RPS2, ribosomal protein S2 -0.269 0.122
130 249357_at AT5G40490 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.269 0.016
131 244960_at ATCG01020 RPL32, ribosomal protein L32 -0.264 0.093
132 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.264 0.087
133 263046_at AT2G05380 GRP3S, glycine-rich protein 3 short isoform -0.262 0.182
134 263409_at AT2G04063 [glycine-rich protein] -0.255 0.098
135 244923_s_at ATMG01020 ORF153B -0.255 0.083
136 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.253 0.061
137 245023_at ATCG00080 PSBI, photosystem II reaction center protein I -0.247 -0.135
138 255599_at AT4G01010 ATCNGC13, CYCLIC NUCLEOTIDE-GATED CHANNEL 13, CNGC13, cyclic nucleotide-gated channel 13 -0.242 -0.206
139 251704_at AT3G56360 unknown -0.242 -0.145
140 246039_at AT5G19480 unknown -0.241 -0.062
141 257918_at AT3G23230 AtERF98, AtTDR1, ERF98, Ethylene Response Factor 98, TDR1, Transcriptional Regulator of Defense Response 1 -0.239 0.094
142 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a -0.238 -0.281
143 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.233 0.103
144 253247_at AT4G34610 BLH6, BEL1-like homeodomain 6 -0.233 -0.068
145 254043_at AT4G25990 CIL -0.233 -0.064
146 252976_s_at AT4G38550 [Arabidopsis phospholipase-like protein (PEARLI 4) family] -0.231 -0.061
147 252214_at AT3G50260 ATERF#011, CEJ1, cooperatively regulated by ethylene and jasmonate 1, DEAR1, DREB AND EAR MOTIF PROTEIN 1 -0.231 -0.124
148 259466_at AT1G19050 ARR7, response regulator 7 -0.230 0.097
149 249108_at AT5G43690 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.230 0.107
150 260043_at AT1G41770 unknown -0.229 -0.239
151 256756_at AT3G25610 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] -0.225 0.140
152 265005_at AT1G61667 unknown -0.223 0.002
153 260380_at AT1G73870 BBX16, B-box domain protein 16, COL7, CONSTANS-LIKE 7 -0.223 0.004
154 252521_at AT3G46380 unknown -0.222 0.119
155 261147_at AT1G19690 [NAD(P)-binding Rossmann-fold superfamily protein] -0.220 0.033
156 255927_at AT1G12630 [Integrase-type DNA-binding superfamily protein] -0.220 0.037
157 262839_at AT1G14770 [RING/FYVE/PHD zinc finger superfamily protein] -0.208 -0.031
158 251166_at AT3G63350 AT-HSFA7B, HSFA7B, HEAT SHOCK TRANSCRIPTION FACTOR A7B -0.208 0.114
159 259386_at AT1G13400 JGL, JAGGED-LIKE, NUB, NUBBIN -0.204 0.045
160 261146_at AT1G19620 unknown -0.203 0.030
161 262001_at AT1G33790 [jacalin lectin family protein] -0.200 0.076
162 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 -0.198 0.251
163 262046_at AT1G79960 ATOFP14, OFP14, ovate family protein 14 -0.195 0.083
164 257244_at AT3G24240 [Leucine-rich repeat receptor-like protein kinase family protein] -0.194 -0.060
165 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 -0.194 -0.079
166 256910_at AT3G24080 [KRR1 family protein] -0.192 0.135
167 254604_at AT4G19070 [Putative membrane lipoprotein] -0.192 0.055
168 264201_at AT1G22630 unknown -0.192 -0.278
169 258108_at AT3G23570 [alpha/beta-Hydrolases superfamily protein] -0.189 -0.014
170 266493_at AT2G07030 [Mutator-like transposase family, has a 2.9e-11 P-value blast match to Q9XE24 /118-277 Pfam PF03108 MuDR family transposase (MuDr-element domain)] -0.189 -0.026
171 259038_at AT3G09210 PTAC13, plastid transcriptionally active 13 -0.188 -0.101
172 267028_at AT2G38470 ATWRKY33, WRKY DNA-BINDING PROTEIN 33, WRKY33, WRKY DNA-binding protein 33 -0.187 -0.262
173 262975_at AT1G75540 AtBBX21, B BOX 21, BBX21, B-box domain protein 21, LHUS, long hypocotyl under shade, STH2, salt tolerance homolog2 -0.186 0.031
174 263168_at AT1G03020 [Thioredoxin superfamily protein] -0.185 -0.065
175 245017_at ATCG00510 PSAI, photsystem I subunit I -0.184 0.175
176 260824_at AT1G06720 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.184 -0.167
177 254610_at AT4G18890 BEH3, BES1/BZR1 homolog 3 -0.184 -0.009
178 256683_at AT3G52220 unknown -0.183 0.027
179 248977_at AT5G45020 [Glutathione S-transferase family protein] -0.182 0.147
180 266313_at AT2G26980 CIPK3, CBL-interacting protein kinase 3, SnRK3.17, SNF1-RELATED PROTEIN KINASE 3.17 -0.182 0.156
181 265667_at AT2G27470 NF-YB11, nuclear factor Y, subunit B11 -0.181 -0.002
182 265437_at AT2G20980 MCM10, minichromosome maintenance 10 -0.180 0.203
183 250491_at AT5G09780 [Transcriptional factor B3 family protein] -0.180 0.088
184 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.179 -0.046
185 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 -0.178 0.064
186 257891_at AT3G17170 RFC3, REGULATOR OF FATTY-ACID COMPOSITION 3 -0.178 0.074
187 244968_at ATCG00640 RPL33, ribosomal protein L33 -0.178 0.029
188 251418_at AT3G60440 [Phosphoglycerate mutase family protein] -0.177 0.077
189 255944_at AT5G28600 [similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G35770.1)] -0.177 0.094
190 255942_at AT1G22360 AtUGT85A2, UDP-glucosyl transferase 85A2, UGT85A2, UDP-glucosyl transferase 85A2 -0.176 0.195
191 249972_at AT5G19040 ATIPT5, Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, IPT5, isopentenyltransferase 5 -0.175 -0.062
192 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.173 0.271
193 252018_at AT3G53000 AtPP2-A15, phloem protein 2-A15, PP2-A15, phloem protein 2-A15 -0.173 0.047
194 260963_at AT1G44990 unknown -0.172 -0.016
195 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 -0.171 -0.046
196 258545_at AT3G07050 NSN1, nucleostemin-like 1 -0.171 0.123
197 262671_at AT1G76040 CPK29, calcium-dependent protein kinase 29 -0.170 -0.018
198 265448_at AT2G46590 Dof-type zinc finger DNA-binding family protein -0.170 0.107
199 266575_at AT2G24060 [Translation initiation factor 3 protein] -0.170 0.043
200 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.169 0.038
201 254524_at AT4G20000 [VQ motif-containing protein] -0.169 -0.111
202 245604_at AT4G14290 [alpha/beta-Hydrolases superfamily protein] -0.169 0.098
203 260472_at AT1G10990 unknown -0.167 0.065
204 259919_at AT1G72560 PSD, PAUSED -0.167 0.192
205 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 -0.167 0.148
206 251092_at AT5G01470 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.167 0.229
207 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] -0.165 0.074
208 254986_at AT4G10640 IQD16, IQ-domain 16 -0.165 -0.041
209 256009_at AT1G19210 [Integrase-type DNA-binding superfamily protein] -0.165 0.226