4.0:Information of module
IAA 24h
In comparison with aerial organ callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009725 response to hormone BP 8.577e-11
GO:0010033 response to organic substance BP 7.511e-10
GO:0009733 response to auxin BP 1.399e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044036 cell wall macromolecule metabolic proces... BP 7.326e-13
GO:0010383 cell wall polysaccharide metabolic proce... BP 3.267e-12
GO:0042546 cell wall biogenesis BP 1.020e-11
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
IAA 24h		 Log2 signal ratio
aerial organ callus inducing medium 96 h
1 260492_at AT2G41850 ADPG2, ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, PGAZAT, polygalacturonase abscission zone A. thaliana 1.389 1.300
2 248333_at AT5G52390 [PAR1 protein] 1.240 1.081
3 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like 1.236 1.248
4 250142_at AT5G14650 [Pectin lyase-like superfamily protein] 1.186 1.389
5 264640_at AT1G65680 ATEXPB2, expansin B2, ATHEXP BETA 1.4, EXPB2, expansin B2 1.179 0.201
6 252004_at AT3G52780 ATPAP20, PAP20 1.135 1.222
7 247179_at AT5G65320 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 1.124 0.902
8 264505_at AT1G09380 UMAMIT25, Usually multiple acids move in and out Transporters 25 0.997 1.222
9 251565_at AT3G58190 ASL16, ASYMMETRIC LEAVES 2-LIKE 16, LBD29, lateral organ boundaries-domain 29 0.984 1.243
10 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 0.952 0.629
11 245982_at AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 0.921 0.944
12 245076_at AT2G23170 GH3.3 0.908 0.831
13 249939_at AT5G22430 [Pollen Ole e 1 allergen and extensin family protein] 0.905 0.602
14 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] 0.904 0.413
15 256789_at AT3G13672 SINA2 0.879 0.938
16 245140_at AT2G45420 LBD18, LOB domain-containing protein 18 0.868 1.182
17 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 0.866 1.137
18 248545_at AT5G50260 CEP1, cysteine endopeptidase 1 0.847 1.270
19 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.811 1.166
20 266611_at AT2G14960 GH3.1 0.810 1.075
21 252989_at AT4G38420 sks9, SKU5 similar 9 0.810 0.318
22 250535_at AT5G08480 [VQ motif-containing protein] 0.794 0.757
23 267250_at AT2G23060 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.791 0.794
24 247905_at AT5G57400 unknown 0.782 0.475
25 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 0.780 0.522
26 260040_at AT1G68765 IDA, INFLORESCENCE DEFICIENT IN ABSCISSION 0.778 0.631
27 247003_at AT5G67550 unknown 0.763 0.438
28 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.762 1.463
29 248763_at AT5G47550 [Cystatin/monellin superfamily protein] 0.758 0.302
30 265923_at AT2G18470 AtPERK4, proline-rich extensin-like receptor kinase 4, PERK4, proline-rich extensin-like receptor kinase 4 0.749 0.106
31 262760_at AT1G10770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.743 -0.092
32 263436_at AT2G28690 unknown 0.740 0.791
33 267119_at AT2G32610 ATCSLB01, cellulose synthase-like B1, ATCSLB1, CELLULOSE SYNTHASE LIKE B1, CSLB01, CELLULOSE SYNTHASE LIKE B1, CSLB01, cellulose synthase-like B1 0.735 1.255
34 262640_at AT1G62760 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.732 0.897
35 263363_at AT2G03850 [Late embryogenesis abundant protein (LEA) family protein] 0.730 0.588
36 254674_at AT4G18450 [Integrase-type DNA-binding superfamily protein] 0.728 0.952
37 261834_at AT1G10640 [Pectin lyase-like superfamily protein] 0.728 0.049
38 266866_at AT2G29940 ABCG31, ATP-binding cassette G31, ATPDR3, PLEIOTROPIC DRUG RESISTANCE 3, PDR3, pleiotropic drug resistance 3 0.724 0.578
39 259027_at AT3G09280 unknown 0.719 0.215
40 263245_at AT2G31470 DOR, DROUGHT TOLERANCE REPRESSOR 0.717 0.219
41 264729_at AT1G22990 HIPP22, heavy metal associated isoprenylated plant protein 22 0.715 0.810
42 264143_at AT1G79330 AMC6, ATMC5, metacaspase 5, ATMCP2b, metacaspase 2b, MC5, metacaspase 5, MCP2b, metacaspase 2b 0.713 0.706
43 266756_at AT2G46950 CYP709B2, cytochrome P450, family 709, subfamily B, polypeptide 2 0.705 0.803
44 246000_at AT5G20820 SAUR76, SMALL AUXIN UPREGULATED RNA 76 0.700 0.873
45 254754_at AT4G13210 [Pectin lyase-like superfamily protein] 0.695 0.762
46 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 0.684 0.106
47 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 0.670 0.452
48 259268_at AT3G01070 AtENODL16, ENODL16, early nodulin-like protein 16 0.669 0.989
49 259308_at AT3G05180 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.659 -0.345
50 257672_at AT3G20300 unknown 0.658 0.329
51 259735_at AT1G64405 unknown 0.656 1.143
52 255807_at AT4G10270 [Wound-responsive family protein] 0.653 0.627
53 265587_at AT2G19980 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.647 0.617
54 245196_at AT1G67750 [Pectate lyase family protein] 0.647 0.507
55 258618_at AT3G02885 GASA5, GAST1 protein homolog 5 0.647 1.079
56 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.637 -0.192
57 253047_at AT4G37295 unknown 0.626 0.604
58 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.625 0.679
59 258451_at AT3G22360 AOX1B, alternative oxidase 1B 0.625 0.874
60 260211_at AT1G74440 unknown 0.624 0.483
61 262525_at AT1G17060 CHI2, CHIBI 2, CYP72C1, cytochrome p450 72c1, SHK1, SHRINK 1, SOB7, SUPPRESSOR OF PHYB-4 7 0.618 0.715
62 251612_at AT3G57950 unknown 0.615 0.369
63 260883_at AT1G29270 unknown 0.609 0.681
64 254728_at AT4G13690 unknown 0.608 0.763
65 261385_at AT1G05450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.606 0.726
66 253908_at AT4G27260 GH3.5, WES1 0.600 0.382
67 263959_at AT2G36210 SAUR45, SMALL AUXIN UPREGULATED RNA 45 0.598 0.932
68 245226_at AT3G29970 [B12D protein] 0.595 0.939
69 264527_at AT1G30760 [FAD-binding Berberine family protein] 0.587 1.226
70 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 0.561 0.271
71 264891_at AT1G23200 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.558 0.041
72 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.549 0.640
73 252279_at AT3G49700 ACS9, 1-aminocyclopropane-1-carboxylate synthase 9, AtACS9, ETO3, ETHYLENE OVERPRODUCING 3 0.544 0.155
74 265732_at AT2G01300 unknown 0.533 -0.196
75 260528_at AT2G47260 ATWRKY23, WRKY DNA-BINDING PROTEIN 23, WRKY23, WRKY DNA-binding protein 23 0.532 0.812
76 258209_at AT3G14060 unknown 0.519 0.749
77 266952_at AT2G34555 ATGA2OX3, gibberellin 2-oxidase 3, GA2OX3, gibberellin 2-oxidase 3 0.511 0.175
78 250152_at AT5G15120 unknown 0.494 0.391
79 246576_at AT1G31650 ATROPGEF14, ROPGEF14, ROP (rho of plants) guanine nucleotide exchange factor 14 0.492 0.053
80 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 0.491 1.004
81 247052_at AT5G66700 ATHB53, ARABIDOPSIS THALIANA HOMEOBOX 53, HB-8, HOMEOBOX-8, HB53, homeobox 53 0.490 0.627
82 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein 0.486 0.035
83 249406_at AT5G40210 UMAMIT42, Usually multiple acids move in and out Transporters 42 0.483 0.472
84 248611_at AT5G49520 ATWRKY48, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY48, WRKY DNA-binding protein 48 0.483 0.667
85 251188_at AT3G62730 unknown 0.479 0.500
86 256981_at AT3G13380 BRL3, BRI1-like 3 0.477 0.747
87 264957_at AT1G77000 ATSKP2;2, ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, SKP2B 0.466 0.653
88 262001_at AT1G33790 [jacalin lectin family protein] 0.466 0.541
89 264479_at AT1G77280 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] 0.465 0.307
90 249895_at AT5G22500 FAR1, fatty acid reductase 1 0.464 0.483
91 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] 0.459 0.720
92 263726_at AT2G13610 ABCG5, ATP-binding cassette G5 0.458 -0.046
93 251358_at AT3G61160 [Protein kinase superfamily protein] 0.458 0.059
94 256535_at AT1G33280 ANAC015, NAC domain containing protein 15, BRN1, BEARSKIN 1, NAC015, NAC domain containing protein 15 0.456 0.778
95 256014_at AT1G19200 unknown 0.455 0.361
96 259163_at AT3G01490 [Protein kinase superfamily protein] 0.453 -0.044
97 252103_at AT3G51410 unknown 0.447 0.480
98 262373_at AT1G73120 unknown -0.766 0.252
99 249686_at AT5G36140 CYP716A2, cytochrome P450, family 716, subfamily A, polypeptide 2 -0.738 -0.035
100 247070_at AT5G66815 unknown -0.699 -0.058
101 245692_at AT5G04150 BHLH101 -0.654 -0.348
102 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 -0.564 0.110
103 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 -0.549 -0.086
104 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 -0.544 -0.151
105 247685_at AT5G59680 [Leucine-rich repeat protein kinase family protein] -0.529 -0.147
106 251517_at AT3G59370 [Vacuolar calcium-binding protein-related] -0.518 -0.017
107 258746_at AT3G05950 [RmlC-like cupins superfamily protein] -0.508 -0.128
108 250832_at AT5G04950 ATNAS1, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, NAS1, nicotianamine synthase 1 -0.486 -0.542
109 245245_at AT1G44318 hemb2 -0.475 0.021
110 256569_at AT3G19550 unknown -0.466 0.321
111 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 -0.455 -0.087
112 246001_at AT5G20790 unknown -0.447 -0.078
113 251545_at AT3G58810 ATMTP3, ARABIDOPSIS METAL TOLERANCE PROTEIN 3, ATMTPA2, MTP3, METAL TOLERANCE PROTEIN 3, MTPA2, metal tolerance protein A2 -0.445 0.295
114 252537_at AT3G45710 [Major facilitator superfamily protein] -0.439 -0.088
115 253305_at AT4G33666 unknown -0.428 -0.412
116 267588_at AT2G42060 [Cysteine/Histidine-rich C1 domain family protein] -0.412 -0.015
117 250983_at AT5G02780 GSTL1, glutathione transferase lambda 1 -0.408 0.387
118 255608_at AT4G01140 unknown -0.408 0.125
119 252183_at AT3G50740 UGT72E1, UDP-glucosyl transferase 72E1 -0.407 0.233
120 256631_at AT3G28320 unknown -0.405 0.006
121 251677_at AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 -0.403 -0.147
122 245546_at AT4G15290 ATCSLB05, ATCSLB5, CELLULOSE SYNTHASE LIKE 5, CSLB05 -0.401 0.015
123 246844_at AT5G26660 ATMYB86, myb domain protein 86, MYB86, myb domain protein 86 -0.401 -0.173
124 265246_at AT2G43050 ATPMEPCRD -0.398 -0.037
125 259839_at AT1G52190 AtNPF1.2, NPF1.2, NRT1/ PTR family 1.2, NRT1.11, nitrate transporter 1.11 -0.397 -0.044
126 252502_at AT3G46900 COPT2, copper transporter 2 -0.395 -0.407
127 245689_at AT5G04120 [Phosphoglycerate mutase family protein] -0.385 0.774
128 266403_at AT2G38600 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.367 -0.151
129 250770_at AT5G05390 LAC12, laccase 12 -0.361 0.038
130 248750_at AT5G47530 [Auxin-responsive family protein] -0.361 0.009
131 248066_at AT5G55590 QRT1, QUARTET 1 -0.361 -0.098
132 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 -0.359 -0.931
133 251315_at AT3G61410 unknown -0.358 0.041
134 253052_at AT4G37310 CYP81H1, cytochrome P450, family 81, subfamily H, polypeptide 1 -0.356 -0.043
135 250674_at AT5G07130 LAC13, laccase 13 -0.355 0.004
136 254816_at AT4G12440 APT4, adenine phosphoribosyl transferase 4 -0.354 -0.154
137 261958_at AT1G64500 [Glutaredoxin family protein] -0.348 -0.554
138 254404_at AT4G21340 B70 -0.348 -0.062
139 266978_at AT2G39430 [Disease resistance-responsive (dirigent-like protein) family protein] -0.348 0.071
140 266995_at AT2G34500 CYP710A1, cytochrome P450, family 710, subfamily A, polypeptide 1 -0.347 0.154
141 256968_at AT3G21070 ATNADK-1, NAD KINASE 1, NADK1, NAD kinase 1 -0.338 0.045
142 250793_at AT5G05600 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.337 0.428
143 263825_at AT2G40370 LAC5, laccase 5 -0.334 0.487
144 265134_at AT1G51260 LPAT3, lysophosphatidyl acyltransferase 3 -0.331 -0.107
145 259036_at AT3G09220 LAC7, laccase 7 -0.331 -0.158
146 248040_at AT5G55970 [RING/U-box superfamily protein] -0.331 0.066
147 261509_at AT1G71740 unknown -0.327 0.132
148 259291_at AT3G11550 CASP2, Casparian strip membrane domain protein 2 -0.326 0.008
149 259854_at AT1G72200 [RING/U-box superfamily protein] -0.323 -0.175
150 247231_at AT5G65230 AtMYB53, myb domain protein 53, MYB53, myb domain protein 53 -0.322 -0.102
151 245560_at AT4G15480 UGT84A1 -0.318 -0.164
152 256602_at AT3G28310 unknown -0.317 0.156
153 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 -0.317 0.315
154 262459_at AT1G50400 [Eukaryotic porin family protein] -0.314 -0.021
155 246510_at AT5G15410 ATCNGC2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, CNGC2, CYCLIC NUCLEOTIDE GATED CHANNEL 2, DND1, DEFENSE NO DEATH 1 -0.307 -0.221
156 258570_at AT3G04530 ATPPCK2, PEPCK2, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2, PPCK2, phosphoenolpyruvate carboxylase kinase 2 -0.307 0.311
157 254092_at AT4G25090 [Riboflavin synthase-like superfamily protein] -0.304 -0.028
158 251023_at AT5G02170 [Transmembrane amino acid transporter family protein] -0.303 0.217
159 255264_at AT4G05170 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.301 0.011
160 262795_at AT1G13130 [Cellulase (glycosyl hydrolase family 5) protein] -0.298 -0.214
161 259351_at AT3G05150 [Major facilitator superfamily protein] -0.295 0.336
162 252209_at AT3G50400 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.295 0.510
163 264010_at AT2G21100 [Disease resistance-responsive (dirigent-like protein) family protein] -0.294 0.573
164 263998_at AT2G22510 [hydroxyproline-rich glycoprotein family protein] -0.291 0.432
165 264794_at AT1G08670 [ENTH/VHS family protein] -0.290 0.004
166 263227_at AT1G30750 unknown -0.290 0.090
167 245412_at AT4G17280 [Auxin-responsive family protein] -0.289 0.209
168 247091_at AT5G66390 PRX72, PEROXIDASE 72 -0.283 0.053
169 248770_at AT5G47740 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.283 -0.023
170 267425_at AT2G34810 [FAD-binding Berberine family protein] -0.282 -0.323
171 260039_at AT1G68795 CLE12, CLAVATA3/ESR-RELATED 12 -0.282 0.050
172 255528_at AT4G02090 unknown -0.280 0.323
173 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 -0.279 -0.123
174 245296_at AT4G16370 oligopeptide transporter -0.278 -0.503
175 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] -0.278 0.518
176 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 -0.277 -0.165
177 266244_at AT2G27740 unknown -0.277 -0.277
178 248424_at AT5G51680 [hydroxyproline-rich glycoprotein family protein] -0.274 0.078
179 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] -0.273 0.311
180 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 -0.271 0.422
181 249848_at AT5G23220 NIC3, nicotinamidase 3 -0.270 0.550
182 262406_at AT1G34670 AtMYB93, myb domain protein 93, MYB93, myb domain protein 93 -0.270 0.502
183 262349_at AT2G48130 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.268 0.428
184 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 -0.268 0.681
185 245305_at AT4G17215 [Pollen Ole e 1 allergen and extensin family protein] -0.266 0.276
186 264832_at AT1G03660 [Ankyrin-repeat containing protein] -0.266 0.031
187 254474_at AT4G20390 [Uncharacterised protein family (UPF0497)] -0.264 0.337
188 248049_at AT5G56090 COX15, cytochrome c oxidase 15 -0.262 0.182
189 251249_at AT3G62160 [HXXXD-type acyl-transferase family protein] -0.261 -0.240
190 255626_at AT4G00780 [TRAF-like family protein] -0.259 -0.096
191 252222_at AT3G49845 WIH3, WINDHOSE 3 -0.259 0.049
192 265547_at AT2G28305 ATLOG1, LOG1, LONELY GUY 1 -0.258 -0.469
193 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] -0.257 -0.092