4.0:Information of module
Rose Bengal 0.5 uM
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 7.279e-40
GO:0010243 response to organonitrogen compound BP 3.566e-39
GO:1901698 response to nitrogen compound BP 1.843e-32
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0051273 beta-glucan metabolic process BP 2.315e-09
GO:0034976 response to endoplasmic reticulum stress BP 1.904e-08
GO:0005975 carbohydrate metabolic process BP 1.037e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Rose Bengal 0.5 uM		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.887 -0.165
2 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 0.864 -1.204
3 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A 0.860 -0.122
4 249197_at AT5G42380 CML37, calmodulin like 37 0.826 -0.059
5 245755_at AT1G35210 unknown 0.798 -0.882
6 266821_at AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 0.739 0.120
7 251336_at AT3G61190 BAP1, BON association protein 1 0.729 -0.441
8 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.722 0.513
9 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] 0.711 0.259
10 258606_at AT3G02840 [ARM repeat superfamily protein] 0.702 -0.781
11 248799_at AT5G47230 ATERF-5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ATERF5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5, AtMACD1, ERF102, ERF5, ethylene responsive element binding factor 5 0.680 -0.358
12 260804_at AT1G78410 [VQ motif-containing protein] 0.608 -0.095
13 263182_at AT1G05575 unknown 0.605 0.482
14 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.586 -0.408
15 257482_x_at AT1G27820 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.549 0.227
16 267451_at AT2G33710 [Integrase-type DNA-binding superfamily protein] 0.510 -0.777
17 265327_at AT2G18210 unknown 0.496 -0.373
18 260881_at AT1G21550 [Calcium-binding EF-hand family protein] 0.493 -0.074
19 252567_at AT3G46070 [C2H2-type zinc finger family protein] 0.481 0.124
20 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.473 -1.066
21 265276_at AT2G28400 unknown 0.469 0.174
22 264202_at AT1G22810 [Integrase-type DNA-binding superfamily protein] 0.465 -1.213
23 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.462 0.244
24 262656_at AT1G14200 [RING/U-box superfamily protein] 0.459 0.111
25 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 0.453 -0.476
26 245711_at AT5G04340 C2H2, CZF2, COLD INDUCED ZINC FINGER PROTEIN 2, ZAT6, zinc finger of Arabidopsis thaliana 6 0.446 -0.244
27 256518_at AT1G66080 unknown 0.443 -0.298
28 265725_at AT2G32030 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.440 -1.169
29 262549_at AT1G31290 AGO3, ARGONAUTE 3 0.432 0.024
30 249485_at AT5G39020 [Malectin/receptor-like protein kinase family protein] 0.424 -0.454
31 252681_at AT3G44350 anac061, NAC domain containing protein 61, NAC061, NAC domain containing protein 61 0.418 -0.107
32 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 0.414 -1.219
33 256245_at AT3G12580 ATHSP70, ARABIDOPSIS HEAT SHOCK PROTEIN 70, HSP70, heat shock protein 70 0.413 1.584
34 261564_at AT1G01720 ANAC002, Arabidopsis NAC domain containing protein 2, ATAF1 0.409 0.098
35 262383_at AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.387 0.085
36 262072_at AT1G59590 ZCF37 0.384 0.303
37 266092_at AT2G37880 unknown 0.378 0.284
38 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.377 -0.987
39 264866_at AT1G24140 [Matrixin family protein] 0.365 -1.167
40 247655_at AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 0.356 0.172
41 248286_at AT5G52870 MAKR5, MEMBRANE-ASSOCIATED KINASE REGULATOR 5 0.355 -0.716
42 264314_at AT1G70420 unknown 0.355 -0.417
43 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a 0.352 0.212
44 259987_at AT1G75030 ATLP-3, thaumatin-like protein 3, TLP-3, thaumatin-like protein 3 0.338 -0.354
45 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.331 -0.801
46 267065_at AT2G41080 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.313 -0.425
47 265668_at AT2G32020 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.312 0.360
48 261713_at AT1G32640 ATMYC2, JAI1, JASMONATE INSENSITIVE 1, JIN1, JASMONATE INSENSITIVE 1, MYC2, RD22BP1, ZBF1 0.310 -0.383
49 252004_at AT3G52780 ATPAP20, PAP20 -0.458 -1.054
50 250200_at AT5G14130 [Peroxidase superfamily protein] -0.412 -0.069
51 252078_at AT3G51740 IMK2, inflorescence meristem receptor-like kinase 2 -0.402 -0.756
52 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 -0.370 -0.841
53 246567_at AT5G14950 ATGMII, GMII, golgi alpha-mannosidase II -0.349 -0.384
54 249626_at AT5G37540 [Eukaryotic aspartyl protease family protein] -0.343 -0.327
55 266601_at AT2G46060 [transmembrane protein-related] -0.332 0.148
56 252439_at AT3G47400 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.325 -0.227
57 253925_at AT4G26690 GDPDL3, Glycerophosphodiester phosphodiesterase (GDPD) like 3, GPDL2, GLYCEROPHOSPHODIESTERASE-LIKE 2, MRH5, MUTANT ROOT HAIR 5, SHV3, SHAVEN 3 -0.314 0.651
58 252128_at AT3G50870 GATA18, GATA TRANSCRIPTION FACTOR 18, HAN, HANABA TANARU, MNP, MONOPOLE -0.311 -0.081
59 261675_at AT1G18290 unknown -0.310 -0.914
60 256737_at AT3G29420 [geranylgeranyl pyrophosphate synthase-related / GGPP synthetase-related / farnesyltranstransferase-related] -0.308 -1.331
61 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 -0.303 -0.272
62 254326_at AT4G22610 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.299 -0.945
63 267260_at AT2G23130 AGP17, arabinogalactan protein 17, ATAGP17 -0.299 -0.722
64 251899_at AT3G54400 [Eukaryotic aspartyl protease family protein] -0.298 0.371
65 258722_at AT3G09590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.297 -0.562
66 263688_at AT1G26920 unknown -0.295 0.979
67 264389_at AT1G11960 [ERD (early-responsive to dehydration stress) family protein] -0.293 -0.148
68 249794_at AT5G23530 AtCXE18, carboxyesterase 18, CXE18, carboxyesterase 18 -0.293 1.062
69 266022_at AT2G05920 [Subtilase family protein] -0.291 1.036
70 253875_at AT4G27520 AtENODL2, ENODL2, early nodulin-like protein 2 -0.290 0.230
71 259328_at AT3G16440 ATMLP-300B, myrosinase-binding protein-like protein-300B, MEE36, maternal effect embryo arrest 36, MLP-300B, myrosinase-binding protein-like protein-300B -0.289 -0.636
72 264318_at AT1G04220 KCS2, 3-ketoacyl-CoA synthase 2 -0.287 0.422
73 245436_at AT4G16620 UMAMIT8, Usually multiple acids move in and out Transporters 8 -0.281 -0.432
74 250059_at AT5G17820 [Peroxidase superfamily protein] -0.276 0.107
75 256908_at AT3G24040 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.272 0.322
76 262846_at AT1G14670 [Endomembrane protein 70 protein family] -0.270 0.313
77 265994_at AT2G24170 [Endomembrane protein 70 protein family] -0.270 0.371
78 263293_x_at AT2G10880 [hypothetical protein, similar to hypothetical protein GB:AAC26673] -0.269 -1.074
79 264136_at AT1G78980 SRF5, STRUBBELIG-receptor family 5 -0.267 -0.908
80 254340_at AT4G22120 [ERD (early-responsive to dehydration stress) family protein] -0.265 0.440
81 248572_at AT5G49800 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.262 -0.044
82 259014_at AT3G07320 [O-Glycosyl hydrolases family 17 protein] -0.261 -0.004
83 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 -0.260 -0.398
84 255189_at AT4G07350 unknown -0.257 -0.311
85 252989_at AT4G38420 sks9, SKU5 similar 9 -0.253 0.710
86 262768_at AT1G12990 [beta-1,4-N-acetylglucosaminyltransferase family protein] -0.252 -0.058
87 250143_at AT5G14670 ARFA1B, ADP-ribosylation factor A1B, ATARFA1B, ADP-ribosylation factor A1B -0.250 -0.470
88 264001_at AT2G22420 [Peroxidase superfamily protein] -0.244 -0.184
89 245982_at AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 -0.241 0.589
90 262504_at AT1G21750 ATPDI5, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, ATPDIL1-1, PDI-like 1-1, PDI5, PROTEIN DISULFIDE ISOMERASE 5, PDIL1-1, PDI-like 1-1 -0.240 1.250
91 247097_at AT5G66460 AtMAN7, MAN7, endo-beta-mannase 7 -0.235 0.837
92 255332_at AT4G04340 [ERD (early-responsive to dehydration stress) family protein] -0.234 -0.060
93 266464_at AT2G47800 ABCC4, ATP-binding cassette C4, ATMRP4, multidrug resistance-associated protein 4, EST3, MRP4, multidrug resistance-associated protein 4 -0.234 0.605
94 254109_at AT4G25240 SKS1, SKU5 similar 1 -0.231 -0.138
95 267592_at AT2G39710 [Eukaryotic aspartyl protease family protein] -0.227 -0.526