4.0:Information of module
Indigo Carmine 0.5 uM
In comparison with root - 08% oxygen - 2h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009685 gibberellin metabolic process BP 6.974e-04
GO:0016101 diterpenoid metabolic process BP 7.992e-04
GO:0009686 gibberellin biosynthetic process BP 1.550e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009628 response to abiotic stimulus BP 1.222e-03
GO:0009416 response to light stimulus BP 2.224e-03
GO:0009639 response to red or far red light BP 2.280e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Indigo Carmine 0.5 uM		 Log2 signal ratio
root - 08% oxygen - 2h
1 245336_at AT4G16515 CLEL 6, CLE-like 6, GLV1, GOLVEN 1, RGF6, root meristem growth factor 6 0.267 -0.008
2 246487_at AT5G16030 unknown 0.213 0.015
3 245671_at AT1G28230 ATPUP1, PUP1, purine permease 1 0.206 0.040
4 263971_at AT2G42800 AtRLP29, receptor like protein 29, RLP29, receptor like protein 29 0.201 0.015
5 260434_at AT1G68330 unknown 0.201 0.015
6 259275_at AT3G01060 unknown 0.196 0.014
7 255289_at AT4G04690 [F-box and associated interaction domains-containing protein] 0.195 0.021
8 255545_at AT4G01890 [Pectin lyase-like superfamily protein] 0.193 0.035
9 250567_at AT5G08090 unknown 0.193 0.035
10 251702_at AT3G56660 BZIP49, basic region/leucine zipper motif protein 49 0.187 0.017
11 254769_at AT4G13330 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.185 0.037
12 264798_at AT1G08730 ATXIC, MYOSIN XI C, XIC 0.184 -0.007
13 267219_at AT2G02590 unknown 0.178 0.031
14 247529_at AT5G61520 [Major facilitator superfamily protein] 0.176 0.025
15 266525_at AT2G16970 MEE15, maternal effect embryo arrest 15 0.172 0.065
16 249184_at AT5G43020 [Leucine-rich repeat protein kinase family protein] 0.170 -0.033
17 257278_at AT3G14480 [glycine/proline-rich protein] 0.170 0.045
18 266344_at AT2G01580 unknown 0.169 0.014
19 259797_at AT1G64410 unknown 0.169 -0.017
20 255717_at AT4G00350 [MATE efflux family protein] 0.169 0.047
21 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.168 0.045
22 252316_at AT3G48700 ATCXE13, carboxyesterase 13, CXE13, carboxyesterase 13 0.164 -0.010
23 261708_at AT1G32740 [SBP (S-ribonuclease binding protein) family protein] -0.223 0.009
24 257331_at ATMG01330 ORF107H -0.210 -0.022
25 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier -0.207 -0.028
26 250530_at AT5G08630 [DDT domain-containing protein] -0.169 -0.098
27 267579_at AT2G42000 AtMT4a, Arabidopsis thaliana metallothionein 4a -0.132 0.027
28 251806_at AT3G55370 OBP3, OBF-binding protein 3 -0.130 -0.025
29 248956_at AT5G45610 SUV2, SENSITIVE TO UV 2 -0.118 -0.023
30 255361_at AT4G03990 [similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1)] -0.118 0.013
31 253669_at AT4G30000 [Dihydropterin pyrophosphokinase / Dihydropteroate synthase] -0.116 0.022
32 246790_at AT5G27610 ALY1, ALWAYS EARLY 1, ATALY1, ARABIDOPSIS THALIANA ALWAYS EARLY 1 -0.101 0.001
33 262494_at AT1G21810 unknown -0.085 -0.034
34 248054_at AT5G55820 WYR, WYRD -0.084 -0.128
35 261781_at AT1G76320 CPD25, CHLOROPLAST DIVISION MUTANT 25, FRS4, FAR1-related sequence 4 -0.080 -0.029
36 262601_at AT1G15310 ATHSRP54A, signal recognition particle 54 kDa subunit, SRP54-1, SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT -0.075 0.032
37 267640_at AT2G32950 ATCOP1, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, COP1, CONSTITUTIVE PHOTOMORPHOGENIC 1, DET340, DEETIOLATED MUTANT 340, EMB168, EMBRYO DEFECTIVE 168, FUS1, FUSCA 1 -0.054 -0.011
38 248342_at AT5G52230 MBD13, methyl-CPG-binding domain protein 13 -0.049 -0.003
39 259565_at AT1G20530 unknown -0.035 -0.023
40 260596_at AT1G55900 EMB1860, embryo defective 1860, TIM50 -0.031 -0.029
41 258657_at AT3G09890 [Ankyrin repeat family protein] -0.026 -0.015
42 260128_at AT1G36310 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.023 -0.037