4.0:Information of module
Indigo Carmine 0.5 uM
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009685 gibberellin metabolic process BP 6.974e-04
GO:0016101 diterpenoid metabolic process BP 7.992e-04
GO:0009686 gibberellin biosynthetic process BP 1.550e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009628 response to abiotic stimulus BP 1.222e-03
GO:0009416 response to light stimulus BP 2.224e-03
GO:0009639 response to red or far red light BP 2.280e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Indigo Carmine 0.5 uM		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 245336_at AT4G16515 CLEL 6, CLE-like 6, GLV1, GOLVEN 1, RGF6, root meristem growth factor 6 0.267 -0.832
2 246487_at AT5G16030 unknown 0.213 0.538
3 245671_at AT1G28230 ATPUP1, PUP1, purine permease 1 0.206 0.483
4 263971_at AT2G42800 AtRLP29, receptor like protein 29, RLP29, receptor like protein 29 0.201 -0.067
5 260434_at AT1G68330 unknown 0.201 -0.179
6 259275_at AT3G01060 unknown 0.196 -0.760
7 255289_at AT4G04690 [F-box and associated interaction domains-containing protein] 0.195 -0.104
8 255545_at AT4G01890 [Pectin lyase-like superfamily protein] 0.193 0.435
9 250567_at AT5G08090 unknown 0.193 0.081
10 251702_at AT3G56660 BZIP49, basic region/leucine zipper motif protein 49 0.187 0.157
11 254769_at AT4G13330 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.185 -0.887
12 264798_at AT1G08730 ATXIC, MYOSIN XI C, XIC 0.184 -0.958
13 267219_at AT2G02590 unknown 0.178 0.578
14 247529_at AT5G61520 [Major facilitator superfamily protein] 0.176 -0.884
15 266525_at AT2G16970 MEE15, maternal effect embryo arrest 15 0.172 -0.398
16 249184_at AT5G43020 [Leucine-rich repeat protein kinase family protein] 0.170 0.296
17 257278_at AT3G14480 [glycine/proline-rich protein] 0.170 -0.125
18 266344_at AT2G01580 unknown 0.169 -0.576
19 259797_at AT1G64410 unknown 0.169 -1.081
20 255717_at AT4G00350 [MATE efflux family protein] 0.169 -1.153
21 260076_at AT1G73630 [EF hand calcium-binding protein family] 0.168 -0.715
22 252316_at AT3G48700 ATCXE13, carboxyesterase 13, CXE13, carboxyesterase 13 0.164 0.383
23 261708_at AT1G32740 [SBP (S-ribonuclease binding protein) family protein] -0.223 -0.386
24 257331_at ATMG01330 ORF107H -0.210 -0.658
25 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier -0.207 -0.232
26 250530_at AT5G08630 [DDT domain-containing protein] -0.169 0.106
27 267579_at AT2G42000 AtMT4a, Arabidopsis thaliana metallothionein 4a -0.132 -0.232
28 251806_at AT3G55370 OBP3, OBF-binding protein 3 -0.130 0.262
29 248956_at AT5G45610 SUV2, SENSITIVE TO UV 2 -0.118 -0.090
30 255361_at AT4G03990 [similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G32830.1)] -0.118 -0.051
31 253669_at AT4G30000 [Dihydropterin pyrophosphokinase / Dihydropteroate synthase] -0.116 -0.362
32 246790_at AT5G27610 ALY1, ALWAYS EARLY 1, ATALY1, ARABIDOPSIS THALIANA ALWAYS EARLY 1 -0.101 0.370
33 262494_at AT1G21810 unknown -0.085 -0.818
34 248054_at AT5G55820 WYR, WYRD -0.084 -0.523
35 261781_at AT1G76320 CPD25, CHLOROPLAST DIVISION MUTANT 25, FRS4, FAR1-related sequence 4 -0.080 -0.584
36 262601_at AT1G15310 ATHSRP54A, signal recognition particle 54 kDa subunit, SRP54-1, SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT -0.075 -0.634
37 267640_at AT2G32950 ATCOP1, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, COP1, CONSTITUTIVE PHOTOMORPHOGENIC 1, DET340, DEETIOLATED MUTANT 340, EMB168, EMBRYO DEFECTIVE 168, FUS1, FUSCA 1 -0.054 0.190
38 248342_at AT5G52230 MBD13, methyl-CPG-binding domain protein 13 -0.049 -0.534
39 259565_at AT1G20530 unknown -0.035 -1.033
40 260596_at AT1G55900 EMB1860, embryo defective 1860, TIM50 -0.031 1.313
41 258657_at AT3G09890 [Ankyrin repeat family protein] -0.026 1.428
42 260128_at AT1G36310 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.023 0.750