4.0:Information of module
chl1-9 10mM NH4NO3
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006811 ion transport BP 1.117e-12
GO:0010167 response to nitrate BP 2.147e-11
GO:0015706 nitrate transport BP 1.198e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050832 defense response to fungus BP 8.773e-14
GO:0009620 response to fungus BP 4.967e-13
GO:0001101 response to acid chemical BP 1.257e-11
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
chl1-9 10mM NH4NO3		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.846 -0.096
2 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.705 -0.008
3 253408_at AT4G32950 [Protein phosphatase 2C family protein] 0.673 0.115
4 258570_at AT3G04530 ATPPCK2, PEPCK2, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2, PPCK2, phosphoenolpyruvate carboxylase kinase 2 0.505 0.124
5 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 0.479 0.041
6 249686_at AT5G36140 CYP716A2, cytochrome P450, family 716, subfamily A, polypeptide 2 0.464 0.015
7 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] 0.440 -0.170
8 253036_at AT4G38340 NLP3, NIN-like protein 3 0.430 0.041
9 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.403 0.109
10 249687_at AT5G36150 ATPEN3, putative pentacyclic triterpene synthase 3, PEN3, putative pentacyclic triterpene synthase 3 0.400 0.031
11 252510_at AT3G46270 [receptor protein kinase-related] 0.387 -0.008
12 258560_at AT3G06020 FAF4, FANTASTIC FOUR 4 0.386 0.126
13 261091_at AT1G07550 [Leucine-rich repeat protein kinase family protein] 0.384 -0.049
14 251335_at AT3G61400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.372 -0.184
15 260831_at AT1G06830 [Glutaredoxin family protein] 0.359 0.031
16 250605_at AT5G07570 [glycine/proline-rich protein] 0.332 -0.016
17 247591_at AT5G60770 ATNRT2.4, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, NRT2.4, nitrate transporter 2.4 0.331 0.138
18 256164_at AT1G48800 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.318 -0.013
19 256927_at AT3G22550 unknown 0.307 -0.094
20 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 0.305 0.004
21 260540_at AT2G43500 NLP8, NIN-like protein 8 0.299 -0.213
22 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 0.291 -0.063
23 251466_at AT3G59340 unknown 0.290 0.049
24 263232_at AT1G05700 [Leucine-rich repeat transmembrane protein kinase protein] 0.284 -0.071
25 250582_at AT5G07580 [Integrase-type DNA-binding superfamily protein] 0.284 -0.110
26 251706_at AT3G56620 UMAMIT10, Usually multiple acids move in and out Transporters 10 0.280 0.007
27 257373_at AT2G43140 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.279 -0.143
28 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 0.274 0.089
29 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 0.271 -0.048
30 248569_at AT5G49770 [Leucine-rich repeat protein kinase family protein] 0.258 -0.061
31 249601_at AT5G37980 [Zinc-binding dehydrogenase family protein] 0.245 -0.075
32 253657_at AT4G30110 ATHMA2, ARABIDOPSIS HEAVY METAL ATPASE 2, HMA2, heavy metal atpase 2 0.244 0.166
33 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 0.243 -0.267
34 255957_at AT1G22160 unknown 0.243 -0.024
35 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.242 -0.288
36 253989_at AT4G26130 unknown 0.237 0.086
37 247005_at AT5G67520 adenosine-5'-phosphosulfate (APS) kinase 4 0.234 -0.050
38 247568_at AT5G61260 [Plant calmodulin-binding protein-related] 0.234 -0.048
39 250054_at AT5G17860 CAX7, calcium exchanger 7 0.232 0.044
40 250639_at AT5G07560 ATGRP20, GRP20, glycine-rich protein 20 0.230 -0.063
41 262301_at AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.230 0.067
42 249791_at AT5G23810 AAP7, amino acid permease 7 0.228 -0.019
43 255105_at AT4G08620 SULTR1;1, sulphate transporter 1;1 0.227 0.073
44 263549_at AT2G21650 ATRL2, ARABIDOPSIS RAD-LIKE 2, MEE3, MATERNAL EFFECT EMBRYO ARREST 3, RSM1, RADIALIS-LIKE SANT/MYB 1 0.223 0.028
45 249932_at AT5G22390 unknown 0.220 -0.238
46 257643_at AT3G25730 EDF3, ethylene response DNA binding factor 3 0.219 -0.002
47 249920_at AT5G19260 FAF3, FANTASTIC FOUR 3 0.218 0.134
48 265151_at AT1G51340 [MATE efflux family protein] 0.215 -0.002
49 247212_at AT5G65040 unknown 0.215 -0.049
50 262898_at AT1G59850 [ARM repeat superfamily protein] 0.215 0.054
51 264653_at AT1G08980 AMI1, amidase 1, ATAMI1, AMIDASE-LIKE PROTEIN 1, ATTOC64-I, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, TOC64-I, TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I 0.213 0.031
52 260893_at AT1G29180 [Cysteine/Histidine-rich C1 domain family protein] 0.213 0.069
53 265584_at AT2G20180 PIF1, PHY-INTERACTING FACTOR 1, PIL5, phytochrome interacting factor 3-like 5 0.211 -0.057
54 256081_at AT1G20700 ATWOX14, WUSCHEL RELATED HOMEOBOX 14, WOX14, WUSCHEL related homeobox 14 0.209 -0.155
55 261545_at AT1G63530 unknown 0.207 -0.032
56 246888_at AT5G26270 unknown 0.206 0.099
57 262719_at AT1G43590 unknown 0.203 -0.156
58 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 0.200 0.116
59 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.197 0.124
60 264054_at AT2G22540 AGL22, AGAMOUS-like 22, FAQ1, Flowering Arabidopsis QTL1, SVP, SHORT VEGETATIVE PHASE 0.197 0.003
61 252205_at AT3G50350 unknown 0.196 0.019
62 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 0.196 -0.134
63 255294_at AT4G04750 [Major facilitator superfamily protein] 0.186 0.005
64 250940_at AT5G03310 SAUR44, SMALL AUXIN UPREGULATED RNA 44 0.184 0.053
65 254384_at AT4G21870 [HSP20-like chaperones superfamily protein] 0.183 0.028
66 261221_at AT1G19960 unknown 0.180 0.019
67 267451_at AT2G33710 [Integrase-type DNA-binding superfamily protein] 0.179 -0.175
68 258038_at AT3G21260 GLTP3, GLYCOLIPID TRANSFER PROTEIN 3 0.179 0.343
69 262324_at AT1G64170 ATCHX16, cation/H+ exchanger 16, CHX16, cation/H+ exchanger 16 0.179 -0.030
70 246807_at AT5G27100 ATGLR2.1, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, GLR2.1, glutamate receptor 2.1 0.179 0.097
71 252444_at AT3G46980 PHT4;3, phosphate transporter 4;3 0.178 0.127
72 255945_at AT5G28610 unknown 0.177 -0.044
73 267497_at AT2G30540 [Thioredoxin superfamily protein] 0.176 -0.033
74 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 0.175 0.202
75 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.175 0.099
76 255893_at AT1G17960 [Threonyl-tRNA synthetase] 0.175 -0.277
77 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 0.174 -0.073
78 249955_at AT5G18840 [Major facilitator superfamily protein] 0.174 0.179
79 253763_at AT4G28850 ATXTH26, XTH26, xyloglucan endotransglucosylase/hydrolase 26 0.173 0.112
80 248961_at AT5G45650 [subtilase family protein] 0.172 -0.068
81 252183_at AT3G50740 UGT72E1, UDP-glucosyl transferase 72E1 0.171 -0.077
82 246463_at AT5G16970 AER, alkenal reductase, AT-AER, alkenal reductase 0.169 0.224
83 245650_at AT1G24735 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.169 -0.039
84 261199_at AT1G12950 RSH2, root hair specific 2 0.167 -0.238
85 258664_at AT3G08700 UBC12, ubiquitin-conjugating enzyme 12 0.167 -0.068
86 263558_at AT2G16380 [Sec14p-like phosphatidylinositol transfer family protein] 0.166 0.036
87 257021_at AT3G19710 BCAT4, branched-chain aminotransferase4 0.165 -0.198
88 255626_at AT4G00780 [TRAF-like family protein] 0.164 0.154
89 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 0.164 -0.119
90 253382_at AT4G33040 [Thioredoxin superfamily protein] 0.164 0.220
91 253483_at AT4G31910 BAT1, BR-related AcylTransferase1, PIZ, PIZZA 0.163 -0.112
92 251301_at AT3G61880 CYP78A9, cytochrome p450 78a9 0.162 -0.183
93 247284_at AT5G64410 ATOPT4, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, OPT4, oligopeptide transporter 4 0.159 0.007
94 245510_at AT4G15740 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.156 0.020
95 261090_at AT1G07560 [Leucine-rich repeat protein kinase family protein] 0.156 -0.103
96 250724_at AT5G06330 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.155 0.093
97 248273_at AT5G53500 [Transducin/WD40 repeat-like superfamily protein] 0.153 0.010
98 261606_at AT1G49570 [Peroxidase superfamily protein] 0.152 -0.030
99 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 0.152 0.071
100 248528_at AT5G50760 SAUR55, SMALL AUXIN UPREGULATED RNA 55 0.151 -0.062
101 261020_at AT1G26390 [FAD-binding Berberine family protein] -1.373 0.011
102 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 -1.358 -0.415
103 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 -1.330 0.068
104 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.984 -0.031
105 249476_at AT5G38910 [RmlC-like cupins superfamily protein] -0.940 0.053
106 261021_at AT1G26380 [FAD-binding Berberine family protein] -0.917 0.191
107 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 -0.870 -0.109
108 261006_at AT1G26410 [FAD-binding Berberine family protein] -0.774 -0.037
109 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.738 0.023
110 266292_at AT2G29350 SAG13, senescence-associated gene 13 -0.720 0.047
111 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A -0.718 0.008
112 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G -0.702 0.132
113 245567_at AT4G14630 GLP9, germin-like protein 9 -0.632 0.042
114 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 -0.625 -0.178
115 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.619 -0.069
116 256012_at AT1G19250 FMO1, flavin-dependent monooxygenase 1 -0.605 -0.151
117 251755_at AT3G55790 unknown -0.592 -0.046
118 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 -0.589 0.106
119 260015_at AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase -0.564 -0.299
120 261005_at AT1G26420 [FAD-binding Berberine family protein] -0.553 -0.059
121 264774_at AT1G22890 unknown -0.506 -0.122
122 255812_at AT4G10310 ATHKT1, HKT1, high-affinity K+ transporter 1, HKT1;1 -0.476 0.043
123 249417_at AT5G39670 [Calcium-binding EF-hand family protein] -0.468 -0.004
124 252882_at AT4G39675 unknown -0.462 0.076
125 249675_at AT5G35940 [Mannose-binding lectin superfamily protein] -0.461 0.318
126 254431_at AT4G20840 [FAD-binding Berberine family protein] -0.442 0.064
127 255252_at AT4G04990 unknown -0.439 0.015
128 266265_at AT2G29340 [NAD-dependent epimerase/dehydratase family protein] -0.431 -0.064
129 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 -0.430 -0.111
130 253868_at AT4G27500 PPI1, proton pump interactor 1 -0.416 0.292
131 245082_at AT2G23270 unknown -0.416 0.021
132 266983_at AT2G39400 [alpha/beta-Hydrolases superfamily protein] -0.403 0.013
133 257061_at AT3G18250 [Putative membrane lipoprotein] -0.400 0.051
134 250415_at AT5G11210 ATGLR2.5, ARABIDOPSIS THALIANA GLU, GLR2.5, glutamate receptor 2.5 -0.397 0.038
135 252417_at AT3G47480 [Calcium-binding EF-hand family protein] -0.397 0.075
136 251334_at AT3G61390 [RING/U-box superfamily protein] -0.390 0.177
137 264433_at AT1G61810 BGLU45, beta-glucosidase 45 -0.382 -0.046
138 252345_at AT3G48640 unknown -0.365 -0.026
139 250597_at AT5G07680 ANAC079, Arabidopsis NAC domain containing protein 79, ANAC080, NAC domain containing protein 80, ATNAC4, NAC080, NAC domain containing protein 80, NAC4 -0.364 -0.125
140 249333_at AT5G40990 GLIP1, GDSL lipase 1 -0.359 -0.167
141 251229_at AT3G62740 BGLU7, beta glucosidase 7 -0.357 -0.082
142 262148_at AT1G52560 [HSP20-like chaperones superfamily protein] -0.355 0.010
143 267262_at AT2G22990 SCPL8, SERINE CARBOXYPEPTIDASE-LIKE 8, SNG1, sinapoylglucose 1 -0.351 -0.037
144 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier -0.339 -0.155
145 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.337 0.111
146 266282_at AT2G29220 LecRK-III.1, L-type lectin receptor kinase III.1 -0.337 -0.016
147 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.332 0.066
148 265945_at AT2G19500 ATCKX2, CKX2, cytokinin oxidase 2 -0.314 -0.092
149 258063_at AT3G14620 CYP72A8, cytochrome P450, family 72, subfamily A, polypeptide 8 -0.308 -0.044
150 256548_at AT3G14770 AtSWEET2, SWEET2 -0.306 0.154
151 266098_at AT2G37870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.302 -0.029
152 248765_at AT5G47650 ATNUDT2, nudix hydrolase homolog 2, ATNUDX2, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, NUDT2, nudix hydrolase homolog 2 -0.302 0.025
153 261453_at AT1G21130 IGMT4, indole glucosinolate O-methyltransferase 4 -0.295 0.155
154 252073_at AT3G51750 unknown -0.292 -0.227
155 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 -0.292 -0.140
156 267439_at AT2G19060 [SGNH hydrolase-type esterase superfamily protein] -0.287 0.019
157 246055_at AT5G08380 AGAL1, alpha-galactosidase 1, AtAGAL1, alpha-galactosidase 1 -0.287 0.047
158 265260_at AT2G43000 ANAC042, NAC domain containing protein 42, JUB1, JUNGBRUNNEN 1, NAC042, NAC domain containing protein 42 -0.287 -0.237
159 259428_at AT1G01560 ATMPK11, MAP kinase 11, MPK11, MAP kinase 11 -0.281 0.073
160 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 -0.281 -0.134
161 265659_at AT2G25440 AtRLP20, receptor like protein 20, RLP20, receptor like protein 20 -0.281 -0.039
162 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 -0.280 0.028
163 267567_at AT2G30770 CYP71A13, cytochrome P450, family 71, subfamily A, polypeptide 13 -0.278 0.236
164 267612_at AT2G26690 AtNPF6.2, NPF6.2, NRT1/ PTR family 6.2 -0.277 0.074
165 260706_at AT1G32350 AOX1D, alternative oxidase 1D -0.273 0.146
166 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 -0.269 0.235
167 261249_at AT1G05880 ARI12, ARIADNE 12, ATARI12, ARABIDOPSIS ARIADNE 12 -0.268 0.126
168 263575_at AT2G17070 unknown -0.265 0.153
169 253851_at AT4G28110 AtMYB41, myb domain protein 41, MYB41, myb domain protein 41 -0.263 0.013
170 254905_at AT4G11170 RMG1, Resistance Methylated Gene 1 -0.263 -0.182
171 264940_at AT1G60470 AtGolS4, galactinol synthase 4, GolS4, galactinol synthase 4 -0.262 -0.044
172 254286_at AT4G22950 AGL19, AGAMOUS-like 19, GL19 -0.262 0.060
173 249188_at AT5G42830 [HXXXD-type acyl-transferase family protein] -0.259 -0.150
174 265983_at AT2G18550 ATHB21, homeobox protein 21, HB-2, homeobox-2, HB21, homeobox protein 21 -0.257 0.057
175 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.256 -0.080
176 258203_at AT3G13950 unknown -0.249 0.033
177 262231_at AT1G68740 PHO1;H1 -0.249 0.050
178 257479_at AT1G16150 WAKL4, wall associated kinase-like 4 -0.246 0.002
179 267080_at AT2G41190 [Transmembrane amino acid transporter family protein] -0.244 0.293
180 259481_at AT1G18970 GLP4, germin-like protein 4 -0.243 -0.131
181 253044_at AT4G37290 unknown -0.241 0.070
182 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] -0.235 0.082
183 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] -0.234 0.006
184 249941_at AT5G22270 unknown -0.232 -0.190
185 248408_at AT5G51520 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.229 0.146
186 247061_at AT5G66780 unknown -0.226 -0.128
187 251423_at AT3G60550 CYCP3;2, cyclin p3;2 -0.222 -0.045
188 254014_at AT4G26120 [Ankyrin repeat family protein / BTB/POZ domain-containing protein] -0.222 0.384
189 265683_at AT2G24400 SAUR38, SMALL AUXIN UPREGULATED RNA 38 -0.219 -0.008
190 246988_at AT5G67340 [ARM repeat superfamily protein] -0.218 -0.056
191 266168_at AT2G38870 [Serine protease inhibitor, potato inhibitor I-type family protein] -0.218 0.033
192 262164_at AT1G78070 [Transducin/WD40 repeat-like superfamily protein] -0.216 0.018
193 253179_at AT4G35200 unknown -0.211 -0.258
194 245701_at AT5G04140 FD-GOGAT, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, GLS1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, GLU1, glutamate synthase 1, GLUS -0.211 -0.134
195 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] -0.208 -0.300
196 259743_at AT1G71140 [MATE efflux family protein] -0.207 0.029
197 256447_at AT1G33440 AtNPF4.4, NPF4.4, NRT1/ PTR family 4.4 -0.206 -0.378
198 257478_at AT1G16130 WAKL2, wall associated kinase-like 2 -0.205 -0.003
199 263576_at AT2G17080 unknown -0.205 0.063